Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|119440
Gene name
Location	scaffold_9:1528852..1529552
Strand	-
Gene length (bp)	700
Transcript length (bp)	525
Coding sequence length (bp)	525
Protein length (aa)	175

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00652	Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	1.0E-08	41	155

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 24	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|119440 MFQGLNQLIVLATLLSTGLGGFAIPSRRQAGLSVIKATELDPNVCADAGAGTVGTRVQFNPCNGGSSQLWMLDSA GAEQGLVFIRPLSDSSLCAGIIGGNNVVTLLDAADCASNTDTTNWFPGDSETPAVGFLDGTCLTVDNNEGDSHPA RVQSCIVNFDFTNTAGRQHIVISN*
Coding	>AgabiH97\|119440 ATGTTCCAAGGTTTAAACCAACTTATTGTTCTTGCCACTCTCCTTTCTACCGGGCTTGGAGGATTTGCCATTCCT TCCCGCAGACAGGCCGGTCTTTCCGTGATCAAGGCTACAGAACTCGATCCGAATGTATGTGCTGATGCCGGTGCT GGAACAGTTGGCACTCGGGTGCAGTTCAATCCCTGCAATGGGGGTAGTAGCCAGCTGTGGATGCTGGACTCAGCA GGTGCCGAACAAGGCTTAGTCTTCATAAGGCCACTTTCGGACAGTTCGTTGTGTGCCGGCATCATTGGCGGTAAT AACGTCGTCACATTGCTGGACGCGGCTGATTGTGCTTCTAACACTGACACCACCAATTGGTTCCCTGGGGATTCC GAAACTCCCGCAGTTGGTTTCCTTGATGGCACTTGTTTGACGGTGGACAACAACGAGGGCGACAGCCATCCTGCC AGAGTTCAAAGCTGTATTGTAAATTTCGATTTCACCAATACCGCAGGAAGGCAACACATTGTGATTTCCAATTAA
Transcript	>AgabiH97\|119440 ATGTTCCAAGGTTTAAACCAACTTATTGTTCTTGCCACTCTCCTTTCTACCGGGCTTGGAGGATTTGCCATTCCT TCCCGCAGACAGGCCGGTCTTTCCGTGATCAAGGCTACAGAACTCGATCCGAATGTATGTGCTGATGCCGGTGCT GGAACAGTTGGCACTCGGGTGCAGTTCAATCCCTGCAATGGGGGTAGTAGCCAGCTGTGGATGCTGGACTCAGCA GGTGCCGAACAAGGCTTAGTCTTCATAAGGCCACTTTCGGACAGTTCGTTGTGTGCCGGCATCATTGGCGGTAAT AACGTCGTCACATTGCTGGACGCGGCTGATTGTGCTTCTAACACTGACACCACCAATTGGTTCCCTGGGGATTCC GAAACTCCCGCAGTTGGTTTCCTTGATGGCACTTGTTTGACGGTGGACAACAACGAGGGCGACAGCCATCCTGCC AGAGTTCAAAGCTGTATTGTAAATTTCGATTTCACCAATACCGCAGGAAGGCAACACATTGTGATTTCCAATTAA
Gene	>AgabiH97\|119440 ATGTTCCAAGGTTTAAACCAACTTATTGTTCTTGCCACTCTCCTTTCTACCGGGCTTGGAGGATTTGCCATTCCT TCCCGCAGACAGGCCGGTCTTTCCGTGATCAAGGCTACAGAACTCGATCCGAATGTATGTGCTGATGCCGGTGCT GGAACAGTTGGCACTCGGGTGCAGTTGTACGTCGAATTTTTCTTCGACGTTTCTTTTATTCACACTTATTTCACA CTACTTAGCAATCCCTGCAATGGGGGTAGTAGCCAGCTGTGGATGCTGGACTCAGCAGGTGCCGAACAAGGCTTA GTCTTCATAAGGCCACTTTCGGACAGTTCGTTGTGTGCCGGCATCATTGGCGGTAGTGAGTTTACACCACCCGAG CTCGTTAAACTATTGTAGGAGTCGGCTTACAATTGAACCAGATAACGTCGTCACATTGCTGGACGCGGCTGATTG TGCTTCTAACACTGACACCACCAATTGGTTCCCTGGGGATTCCGAAACTCCCGCAGTTGGTTTCCTTGATGGCAG TTCGTCGCTACATCTTCCTTCCCAAATAACGTGGTTGCTAACCTGAGGGTAAACAGCTTGTTTGACGGTGGACAA CAACGAGGGCGACAGCCATCCTGCCAGAGTTCAAAGCTGTATTGTAAATTTCGATTTCACCAATACCGCAGGAAG GCAACACATTGTGATTTCCAATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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