Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|118580
Gene name
Location	scaffold_9:1313534..1314124
Strand	-
Gene length (bp)	590
Transcript length (bp)	255
Coding sequence length (bp)	255
Protein length (aa)	85

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 35	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	13	30	17

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	0.35	0.00	0.80
Initials	Initials knots	0.00	0.00	0.00
Pileal_Stipeal_center	Stage I stipe center	0.00	0.00	0.00
Pileal_Stipeal_shell	Stage I stipe shell	0.00	0.00	0.00
DIF_stipe_center	Stage II stipe center	0.00	0.00	0.00
DIF_stipe_shell	Stage II stipe shell	1.22	0.43	2.02
DIF_stipe_skin	Stage II stipe skin	1.37	0.00	4.02
DIF_cap_skin	Stage II cap skin	0.00	0.00	0.00
DIF_cap_tissue	Stage II cap tissue	0.00	0.00	0.00
DIF_gill_tissue	Stage II gill tissue	0.39	0.00	0.85
YFB_stipe_center	Young fruiting body stipe center	0.00	0.00	0.00
YFB_stipe_shell	Young fruiting body stipe shell	0.00	0.00	0.00
YFB_stipe_skin	Young fruiting body stipe skin	0.35	0.00	0.82
YFB_cap_skin	Young fruiting body cap skin	0.33	0.00	0.78
YFB_cap_tissue	Young fruiting body cap tissue	0.61	0.00	2.13
YFB_gill_tissue	Young fruiting body gill tissue	0.00	0.00	0.00
YFB_veil	Young fruiting body veil	0.59	0.00	2.12

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	1.000000	no
Casing	YFB_stipe_center	1.000000	no
Casing	YFB_stipe_shell	1.000000	no
Casing	YFB_stipe_skin	1.000000	no
Casing	YFB_cap_skin	1.000000	no
Casing	YFB_cap_tissue	0.860931	no
Casing	YFB_gill_tissue	1.000000	no
Casing	YFB_veil	0.861064	no
Casing	Initials	1.000000	no
Casing	Pileal_Stipeal_center	1.000000	no
Casing	Pileal_Stipeal_shell	1.000000	no
Casing	DIF_stipe_center	1.000000	no
Casing	DIF_stipe_shell	0.684595	no
Casing	DIF_stipe_skin	0.664245	no
Casing	DIF_cap_skin	1.000000	no
Casing	DIF_cap_tissue	1.000000	no
DIF_gill_tissue	YFB_stipe_center	1.000000	no
DIF_gill_tissue	YFB_stipe_shell	1.000000	no
DIF_gill_tissue	YFB_stipe_skin	1.000000	no
DIF_gill_tissue	YFB_cap_skin	1.000000	no
DIF_gill_tissue	YFB_cap_tissue	0.867211	no
DIF_gill_tissue	YFB_gill_tissue	1.000000	no
DIF_gill_tissue	YFB_veil	0.867084	no
YFB_stipe_center	YFB_stipe_shell	1.000000	no
YFB_stipe_center	YFB_stipe_skin	1.000000	no
YFB_stipe_center	YFB_cap_skin	1.000000	no
YFB_stipe_center	YFB_cap_tissue	0.270854	no
YFB_stipe_center	YFB_gill_tissue	1.000000	no
YFB_stipe_center	YFB_veil	0.269746	no
YFB_stipe_shell	YFB_stipe_skin	1.000000	no
YFB_stipe_shell	YFB_cap_skin	1.000000	no
YFB_stipe_shell	YFB_cap_tissue	0.270854	no
YFB_stipe_shell	YFB_gill_tissue	1.000000	no
YFB_stipe_shell	YFB_veil	0.269746	no
YFB_stipe_skin	YFB_cap_skin	1.000000	no
YFB_stipe_skin	YFB_cap_tissue	0.858600	no
YFB_stipe_skin	YFB_gill_tissue	1.000000	no
YFB_stipe_skin	YFB_veil	0.858688	no
YFB_cap_skin	YFB_cap_tissue	0.858905	no
YFB_cap_skin	YFB_gill_tissue	1.000000	no
YFB_cap_skin	YFB_veil	0.858975	no
YFB_cap_tissue	YFB_gill_tissue	0.268771	no
YFB_cap_tissue	YFB_veil	0.911894	no
YFB_gill_tissue	YFB_veil	0.269746	no
Initials	DIF_gill_tissue	1.000000	no
Initials	YFB_stipe_center	1.000000	no
Initials	YFB_stipe_shell	1.000000	no
Initials	YFB_stipe_skin	1.000000	no
Initials	YFB_cap_skin	1.000000	no
Initials	YFB_cap_tissue	0.270854	no
Initials	YFB_gill_tissue	1.000000	no
Initials	YFB_veil	0.269746	no
Initials	Pileal_Stipeal_center	1.000000	no
Initials	Pileal_Stipeal_shell	1.000000	no
Initials	DIF_stipe_center	1.000000	no
Initials	DIF_stipe_shell	0.145389	no
Initials	DIF_stipe_skin	0.119761	no
Initials	DIF_cap_skin	1.000000	no
Initials	DIF_cap_tissue	1.000000	no
Pileal_Stipeal_center	DIF_gill_tissue	1.000000	no
Pileal_Stipeal_center	YFB_stipe_center	1.000000	no
Pileal_Stipeal_center	YFB_stipe_shell	1.000000	no
Pileal_Stipeal_center	YFB_stipe_skin	1.000000	no
Pileal_Stipeal_center	YFB_cap_skin	1.000000	no
Pileal_Stipeal_center	YFB_cap_tissue	0.270854	no
Pileal_Stipeal_center	YFB_gill_tissue	1.000000	no
Pileal_Stipeal_center	YFB_veil	0.269746	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	1.000000	no
Pileal_Stipeal_center	DIF_stipe_center	1.000000	no
Pileal_Stipeal_center	DIF_stipe_shell	0.145389	no
Pileal_Stipeal_center	DIF_stipe_skin	0.119761	no
Pileal_Stipeal_center	DIF_cap_skin	1.000000	no
Pileal_Stipeal_center	DIF_cap_tissue	1.000000	no
Pileal_Stipeal_shell	DIF_gill_tissue	1.000000	no
Pileal_Stipeal_shell	YFB_stipe_center	1.000000	no
Pileal_Stipeal_shell	YFB_stipe_shell	1.000000	no
Pileal_Stipeal_shell	YFB_stipe_skin	1.000000	no
Pileal_Stipeal_shell	YFB_cap_skin	1.000000	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.270854	no
Pileal_Stipeal_shell	YFB_gill_tissue	1.000000	no
Pileal_Stipeal_shell	YFB_veil	0.269746	no
Pileal_Stipeal_shell	DIF_stipe_center	1.000000	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.145389	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.119761	no
Pileal_Stipeal_shell	DIF_cap_skin	1.000000	no
Pileal_Stipeal_shell	DIF_cap_tissue	1.000000	no
DIF_stipe_center	DIF_gill_tissue	1.000000	no
DIF_stipe_center	YFB_stipe_center	1.000000	no
DIF_stipe_center	YFB_stipe_shell	1.000000	no
DIF_stipe_center	YFB_stipe_skin	1.000000	no
DIF_stipe_center	YFB_cap_skin	1.000000	no
DIF_stipe_center	YFB_cap_tissue	0.270854	no
DIF_stipe_center	YFB_gill_tissue	1.000000	no
DIF_stipe_center	YFB_veil	0.269746	no
DIF_stipe_center	DIF_stipe_shell	0.145389	no
DIF_stipe_center	DIF_stipe_skin	0.119761	no
DIF_stipe_center	DIF_cap_skin	1.000000	no
DIF_stipe_center	DIF_cap_tissue	1.000000	no
DIF_stipe_shell	DIF_gill_tissue	0.695870	no
DIF_stipe_shell	YFB_stipe_center	0.147674	no
DIF_stipe_shell	YFB_stipe_shell	0.147674	no
DIF_stipe_shell	YFB_stipe_skin	0.696507	no
DIF_stipe_shell	YFB_cap_skin	0.685296	no
DIF_stipe_shell	YFB_cap_tissue	0.751908	no
DIF_stipe_shell	YFB_gill_tissue	0.147674	no
DIF_stipe_shell	YFB_veil	0.752207	no
DIF_stipe_shell	DIF_stipe_skin	0.951369	no
DIF_stipe_shell	DIF_cap_skin	0.147674	no
DIF_stipe_shell	DIF_cap_tissue	0.147674	no
DIF_stipe_skin	DIF_gill_tissue	0.663271	no
DIF_stipe_skin	YFB_stipe_center	0.122909	no
DIF_stipe_skin	YFB_stipe_shell	0.122909	no
DIF_stipe_skin	YFB_stipe_skin	0.664562	no
DIF_stipe_skin	YFB_cap_skin	0.631709	no
DIF_stipe_skin	YFB_cap_tissue	0.735833	no
DIF_stipe_skin	YFB_gill_tissue	0.122909	no
DIF_stipe_skin	YFB_veil	0.736129	no
DIF_stipe_skin	DIF_cap_skin	0.122909	no
DIF_stipe_skin	DIF_cap_tissue	0.122909	no
DIF_cap_skin	DIF_gill_tissue	1.000000	no
DIF_cap_skin	YFB_stipe_center	1.000000	no
DIF_cap_skin	YFB_stipe_shell	1.000000	no
DIF_cap_skin	YFB_stipe_skin	1.000000	no
DIF_cap_skin	YFB_cap_skin	1.000000	no
DIF_cap_skin	YFB_cap_tissue	0.270854	no
DIF_cap_skin	YFB_gill_tissue	1.000000	no
DIF_cap_skin	YFB_veil	0.269746	no
DIF_cap_skin	DIF_cap_tissue	1.000000	no
DIF_cap_tissue	DIF_gill_tissue	1.000000	no
DIF_cap_tissue	YFB_stipe_center	1.000000	no
DIF_cap_tissue	YFB_stipe_shell	1.000000	no
DIF_cap_tissue	YFB_stipe_skin	1.000000	no
DIF_cap_tissue	YFB_cap_skin	1.000000	no
DIF_cap_tissue	YFB_cap_tissue	0.270854	no
DIF_cap_tissue	YFB_gill_tissue	1.000000	no
DIF_cap_tissue	YFB_veil	0.269746	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|118580 MVAGVTRQCTSSVFFFFLFLFFLFFVAMNHPSRAYARLTRALCDTVCPRRHRQTVRDHSEYDCGRTSRHTTRGRA SPLIHIELR*
Coding	>AgabiH97|118580 ATGGTAGCTGGGGTGACTCGGCAGTGCACCAGCTCTGTTTTTTTTTTTTTTCTATTCCTATTCTTTCTTTTCTTT GTTGCAATGAATCATCCATCAAGAGCATATGCGCGGTTAACCAGAGCGCTTTGTGACACGGTGTGCCCTCGACGC CACCGTCAAACTGTTAGAGATCATTCAGAATACGACTGTGGTAGAACGTCCAGGCATACAACTAGGGGACGTGCT TCTCCTTTGATACACATCGAACTACGATAG
Transcript	>AgabiH97|118580 ATGGTAGCTGGGGTGACTCGGCAGTGCACCAGCTCTGTTTTTTTTTTTTTTCTATTCCTATTCTTTCTTTTCTTT GTTGCAATGAATCATCCATCAAGAGCATATGCGCGGTTAACCAGAGCGCTTTGTGACACGGTGTGCCCTCGACGC CACCGTCAAACTGTTAGAGATCATTCAGAATACGACTGTGGTAGAACGTCCAGGCATACAACTAGGGGACGTGCT TCTCCTTTGATACACATCGAACTACGATAG
Gene	>AgabiH97|118580 ATGGTAGCTGTACGTTCGTTTGACTTTTTTAAATCGCCTCTCGTCGCTAACTGGATGAACAAGGGGGTGACTCGG CAGTGCACCAGCTCTGTTTTTTTTTTTTTTCTATTCCTATTCTTTCTTTTCTTTGTTGCAATGAATCATCCATCA AGAGCATATGGTAAGTTTGTTTTTCATTGCTTGGACGTGTTCGCTGATTGTTTTGATTATAGCGCGGTTAACCAG GTGAGTTTTGCTTTATTCGCTTGGTGATTATGAAACGTTTGGGCTTTTCTACTGGAGAGCGCTTTGTGACACGGT GAGTCTGTCAAACGTTTTCGCTGGTGGATTTGTACTGCTCATTGAAGAAGGATAGGTGTGCCCTCGACGGTGAAC GGCATATAAATTCGATGGTCACCCGTCTATCTCTCGCCTCGTTCAAGCCACCGTCAAACTGTTAGAGATCATTCA GAATACGACTGTGGTAGAACGTCCAGGCATACAACTAGGTGCGTCTATTCTCCTTTCTTTCATCCAATCTCTGGC TAATGCCTGTTTGACTTAACTTAAGGGGACGTGCTTCTCCTTTGATACACATCGAACTACGATAG