Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|117600
Gene name
Locationscaffold_9:1059837..1061483
Strand+
Gene length (bp)1646
Transcript length (bp)1272
Coding sequence length (bp)1272
Protein length (aa) 424

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01612 DNA_pol_A_exo1 3'-5' exonuclease 2.1E-20 116 288

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 135 288 2.0E-16
sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 134 291 1.0E-15
sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 93 384 1.0E-14
sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo PE=3 SV=2 135 288 3.0E-13
sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo PE=3 SV=2 135 288 3.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1 135 288 2.0E-16
sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2 134 291 1.0E-15
sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3 93 384 1.0E-14
sp|B3LWP6|WRNXO_DROAN Werner Syndrome-like exonuclease OS=Drosophila ananassae GN=WRNexo PE=3 SV=2 135 288 3.0E-13
sp|B4I298|WRNXO_DROSE Werner Syndrome-like exonuclease OS=Drosophila sechellia GN=WRNexo PE=3 SV=2 135 288 3.0E-12
sp|B4QUF6|WRNXO_DROSI Werner Syndrome-like exonuclease OS=Drosophila simulans GN=WRNexo PE=3 SV=1 135 288 4.0E-12
sp|Q9VE86|WRNXO_DROME Werner Syndrome-like exonuclease OS=Drosophila melanogaster GN=WRNexo PE=1 SV=2 135 288 8.0E-12
sp|B4K934|WRNXO_DROMO Werner Syndrome-like exonuclease OS=Drosophila mojavensis GN=WRNexo PE=3 SV=1 82 288 1.0E-11
sp|B4PLB3|WRNXO_DROYA Werner Syndrome-like exonuclease OS=Drosophila yakuba GN=WRNexo PE=3 SV=1 135 288 1.0E-11
sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1 135 288 6.0E-11
sp|B4G5C9|WRNXO_DROPE Werner Syndrome-like exonuclease OS=Drosophila persimilis GN=WRNexo PE=3 SV=2 135 288 6.0E-11
sp|Q299L3|WRNXO_DROPS Werner Syndrome-like exonuclease OS=Drosophila pseudoobscura pseudoobscura GN=WRNexo PE=3 SV=2 135 288 7.0E-11
sp|B3NZ68|WRNXO_DROER Werner Syndrome-like exonuclease OS=Drosophila erecta GN=WRNexo PE=3 SV=1 135 288 1.0E-10
sp|B4JF25|WRNXO_DROGR Werner Syndrome-like exonuclease OS=Drosophila grimshawi GN=WRNexo PE=3 SV=1 82 288 3.0E-10
sp|B4N9D3|WRNXO_DROWI Werner Syndrome-like exonuclease OS=Drosophila willistoni GN=WRNexo PE=3 SV=2 42 288 3.0E-10
sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R431 PE=3 SV=1 127 292 7.0E-10
sp|B4M401|WRNXO_DROVI Werner Syndrome-like exonuclease OS=Drosophila virilis GN=WRNexo PE=3 SV=2 135 288 1.0E-08
sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2 135 289 1.0E-06
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GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0008408 3'-5' exonuclease activity Yes
GO:0006139 nucleobase-containing compound metabolic process Yes
GO:0006807 nitrogen compound metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0016787 hydrolase activity No
GO:0005488 binding No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0008150 biological_process No
GO:0097159 organic cyclic compound binding No
GO:0008152 metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0004527 exonuclease activity No
GO:0003674 molecular_function No
GO:0004518 nuclease activity No
GO:0044238 primary metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0009987 cellular process No
GO:0016788 hydrolase activity, acting on ester bonds No
GO:0003824 catalytic activity No
GO:0044237 cellular metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|117600
MSPLLELRMLNSVTRRLTSSPSKQSNLLASLDALDINEGEIKPASRRTARKLKLDDNDTQSQSQYPRSILGNNTQ
NNALDKTRRAATISTQQQASPVKQNLRLYSYKDYPKTCIVYTTHEEEANELIEGLCPGAVAMDLEWMVNFSGSAG
QRERKVSVVQIADNKGVILVIQINNMRRFPSRLQALIENPDVAKVGVNILNDGKKLFRDYGILAKNLVELGSFAL
IVDPSPVAKRKIVSLAKLVEHYCQRILEKGEERISNWEKPLSKKQQEYAANDAHSSLMVYNELLILSRIYSCSLE
GDVRSRFTSNVTWPLENVAAELDSSVEAVKQQHLRAYNYWHKKKLSLDDMCRKLSLKDKGYYGPVSTEDDMALKP
GTVITYIVSALKNKPQLEFQLTELIKLVQMDLNSWSRHSAWILKQNGV*
Coding >AgabiH97|117600
ATGTCTCCTTTATTAGAACTTAGAATGCTCAACTCGGTCACTCGTCGTCTAACTTCATCCCCGTCAAAGCAAAGC
AATCTGCTCGCGTCGCTTGACGCGCTTGATATTAACGAAGGCGAAATCAAACCGGCGTCTAGACGTACCGCTCGC
AAGCTCAAATTGGACGACAATGATACCCAATCTCAATCTCAATATCCAAGATCAATCCTGGGGAATAATACTCAG
AATAATGCATTAGACAAGACGCGGCGCGCGGCGACGATTAGTACACAACAACAGGCGTCGCCTGTCAAACAAAAT
CTCCGATTATATTCGTACAAGGATTACCCGAAAACTTGCATAGTTTATACCACGCACGAAGAGGAAGCCAATGAG
TTGATCGAAGGTCTTTGCCCAGGGGCCGTTGCTATGGACCTCGAATGGATGGTGAATTTTTCTGGAAGCGCTGGA
CAACGAGAACGCAAAGTCTCTGTTGTACAAATCGCAGATAACAAGGGCGTTATTCTTGTAATACAGATAAATAAC
ATGCGGAGATTCCCATCTCGTCTCCAGGCACTCATAGAAAATCCTGATGTTGCAAAAGTTGGCGTTAATATCCTC
AATGATGGAAAGAAACTCTTTCGAGACTATGGAATCCTCGCAAAGAATCTCGTTGAGCTGGGATCTTTCGCTTTG
ATTGTTGATCCATCGCCTGTCGCCAAACGCAAGATCGTTAGCCTTGCCAAGCTCGTTGAACATTACTGTCAACGC
ATTTTGGAGAAAGGGGAAGAACGGATAAGCAATTGGGAAAAGCCTTTGAGTAAGAAACAACAAGAGTATGCCGCA
AATGACGCTCATTCGTCTCTCATGGTCTACAACGAACTTTTGATTCTTTCGCGAATTTACTCTTGCTCACTCGAG
GGCGATGTCCGGAGCCGATTCACTAGTAATGTGACTTGGCCTCTAGAAAATGTCGCTGCAGAGTTGGACTCATCT
GTTGAGGCCGTGAAACAACAACATCTTCGAGCGTACAATTATTGGCACAAGAAGAAGCTAAGCCTCGATGATATG
TGTCGGAAGTTGAGTTTGAAAGACAAAGGGTATTACGGTCCTGTTTCAACGGAGGATGATATGGCTTTAAAACCA
GGTACTGTAATAACATATATCGTATCGGCTTTGAAGAATAAGCCGCAGTTGGAGTTTCAATTGACTGAATTAATT
AAACTAGTTCAGATGGACCTTAATTCTTGGAGTCGTCATTCAGCGTGGATCTTAAAGCAAAATGGTGTATAA
Transcript >AgabiH97|117600
ATGTCTCCTTTATTAGAACTTAGAATGCTCAACTCGGTCACTCGTCGTCTAACTTCATCCCCGTCAAAGCAAAGC
AATCTGCTCGCGTCGCTTGACGCGCTTGATATTAACGAAGGCGAAATCAAACCGGCGTCTAGACGTACCGCTCGC
AAGCTCAAATTGGACGACAATGATACCCAATCTCAATCTCAATATCCAAGATCAATCCTGGGGAATAATACTCAG
AATAATGCATTAGACAAGACGCGGCGCGCGGCGACGATTAGTACACAACAACAGGCGTCGCCTGTCAAACAAAAT
CTCCGATTATATTCGTACAAGGATTACCCGAAAACTTGCATAGTTTATACCACGCACGAAGAGGAAGCCAATGAG
TTGATCGAAGGTCTTTGCCCAGGGGCCGTTGCTATGGACCTCGAATGGATGGTGAATTTTTCTGGAAGCGCTGGA
CAACGAGAACGCAAAGTCTCTGTTGTACAAATCGCAGATAACAAGGGCGTTATTCTTGTAATACAGATAAATAAC
ATGCGGAGATTCCCATCTCGTCTCCAGGCACTCATAGAAAATCCTGATGTTGCAAAAGTTGGCGTTAATATCCTC
AATGATGGAAAGAAACTCTTTCGAGACTATGGAATCCTCGCAAAGAATCTCGTTGAGCTGGGATCTTTCGCTTTG
ATTGTTGATCCATCGCCTGTCGCCAAACGCAAGATCGTTAGCCTTGCCAAGCTCGTTGAACATTACTGTCAACGC
ATTTTGGAGAAAGGGGAAGAACGGATAAGCAATTGGGAAAAGCCTTTGAGTAAGAAACAACAAGAGTATGCCGCA
AATGACGCTCATTCGTCTCTCATGGTCTACAACGAACTTTTGATTCTTTCGCGAATTTACTCTTGCTCACTCGAG
GGCGATGTCCGGAGCCGATTCACTAGTAATGTGACTTGGCCTCTAGAAAATGTCGCTGCAGAGTTGGACTCATCT
GTTGAGGCCGTGAAACAACAACATCTTCGAGCGTACAATTATTGGCACAAGAAGAAGCTAAGCCTCGATGATATG
TGTCGGAAGTTGAGTTTGAAAGACAAAGGGTATTACGGTCCTGTTTCAACGGAGGATGATATGGCTTTAAAACCA
GGTACTGTAATAACATATATCGTATCGGCTTTGAAGAATAAGCCGCAGTTGGAGTTTCAATTGACTGAATTAATT
AAACTAGTTCAGATGGACCTTAATTCTTGGAGTCGTCATTCAGCGTGGATCTTAAAGCAAAATGGTGTATAA
Gene >AgabiH97|117600
ATGTCTCCTTTATTAGAACTTAGAATGCTCAACTCGGTCACTCGTCGTCTAACTTCATCCCCGTCAAAGCAAAGC
AATCTGCTCGCGTCGCTTGACGCGCTTGATATTAACGAAGGCGAAATCAAACCGGCGTCTAGACGTACCGCTCGC
AAGCTCAAATTGGACGACAATGATACCCAATCTCAATCTCAATATCCAAGATCAATCCTGGGGAATAATACTCAG
AATAATGCATTAGACAAGACGCGGCGCGCGGCGACGATTAGTACACAACAACAGGCGTCGCCTGTCAAACAAAAT
CTCCGATTATATTCGTACAAGGATTACCCGAAAACTTGCATAGTTTATACCACGCACGAAGAGGAAGCCAATGAG
TTGATCGAAGGTCTTTGCCCAGGGTATGTTCCCCCTCCCCTTCTTGCAAATCTGCTATACTGACTGATGCCAGGG
CCGTTGCTATGGACCTCGAATGGATGGTGAATTTTTCTGGAAGCGCTGGACAACGAGAACGCAAAGTCTCTGTTG
TACAAATCGCAGATAACAAGGGCGTTATTCTTGTAATACAGATAAATAACATGCGGAGTAAGGTGCCTCATTATC
AAAAATCTTGAGGCTGAAAGAAACTATCCTTAGGATTCCCATCTCGTCTCCAGGTATGACGGACTTTACTCTCTT
CTCGTACATTTGACACAACAGAGATTCTAGGCACTCATAGAAAATCCTGATGTTGCAAAAGTTGGCGTTAATATC
CTCAGTAGGGTCAATTTTTTTTCGTTTATTAAGGCTCGCTCACGCTAGGTTTCAGATGATGGAAAGAAACTCTTT
CGAGACTATGGAATCCTCGCAAAGAATCTCGTTGAGCTGGGATCTTTCGCTTTGATTGTTGATCCATCGCCTGTC
GCCAAACGCAAGATCGTTAGCCTTGCCAAGGTAGGCATGAGCTGTGAGCAATAATGCTTCATGCTCAACCGTTTG
TTTTTTACAAGCTCGTTGAACATTACTGTCAACGCATTTTGGAGAAAGGGGAAGAACGGATAAGCAATTGGGAAA
AGCCTTTGAGTAAGAAACAACAAGAGTGTATGTTCACTTCCATCTCTCTGTCAAGCAACGTGATTGAATGTGTTG
TTTGATTAGATGCCGCAAATGACGCTCATTCGTCTCTCATGGTCTACAACGAACTTTTGATTCTTTCGCGAATTT
ACTCTTGCTCACTCGAGGGCGATGTCCGGAGCCGATTCACTAGTAATGTGACTTGGCCTCTAGAAAATGTCGCTG
CAGAGTTGGACTCATCTGTTGAGGCCGTGAAACAACAACATCTTCGAGCGTACAATTATTGGCACAAGAAGAAGC
TAAGCCTCGATGATATGTGTCGGAAGTTGAGTTTGAAAGACAAAGGGTATTACGGTCCTGTTTCAACGGAGGATG
ATATGGCTTTAAAACCAGGTACTGTAATGTAAGTCTATCACCTTTTTTCTTTCTTTTTCCTATCTGAAGATATGT
CTTTTTGTAGAACATATATCGTATCGGCTTTGAAGAATAAGCCGCAGTTGGAGTTTCAATTGACTGAATTAATTA
AACTAGTTCAGATGGACCTTAATTCTTGGAGTCGTCATTCAGCGTGGATCTTAAAGCAAAATGGTGTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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