© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|117500 |
| Gene name | |
| Location | scaffold_9:1039243..1041854 |
| Strand | - |
| Gene length (bp) | 2611 |
| Transcript length (bp) | 1680 |
| Coding sequence length (bp) | 1680 |
| Protein length (aa) | 560 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.6E-22 | 116 | 435 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 1.6E-08 | 142 | 403 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 92 | 405 | 2.0E-33 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 81 | 408 | 3.0E-33 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 80 | 401 | 3.0E-33 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 85 | 330 | 1.0E-31 |
| sp|A8GCZ5|MDTG_SERP5 | Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | 119 | 256 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 92 | 405 | 2.0E-33 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 81 | 408 | 3.0E-33 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 80 | 401 | 3.0E-33 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 85 | 330 | 1.0E-31 |
| sp|A8GCZ5|MDTG_SERP5 | Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | 119 | 256 | 2.0E-08 |
| sp|D8MQN9|MDTG_ERWBE | Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | 119 | 256 | 2.0E-08 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 119 | 256 | 3.0E-08 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 105 | 322 | 3.0E-07 |
| sp|P0A4K5|PMRA_STRR6 | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | 119 | 252 | 5.0E-06 |
| sp|P0A4K4|PMRA_STRPN | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | 119 | 252 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 103 | 125 | 22 |
| 2 | 140 | 162 | 22 |
| 3 | 175 | 197 | 22 |
| 4 | 233 | 255 | 22 |
| 5 | 276 | 298 | 22 |
| 6 | 363 | 385 | 22 |
| 7 | 415 | 437 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|117500 MMSSCGSGSAAISCRCTPDHRSTETEMFEARSPKEFLPYPRSAVQSIFSMTFSQREDDTIPQENLNYEVERPSTP VHWTSEDSDALAAVSFEEQRSPLPKFQLSLVLLVQLSEPITALVIYPFINQFIRDTGITKGDDNWTGYYAGIIES TFFFTETITVFHWGWLSDRIGRRPVLLLGPLGLTFAMLWFGYSTSFWPLIFARSFQGMFNGNIGVSKTVMVELTD ETNIGDAFAMMPFMWSIGSTIAPFIGGPLSNPAQRWPHVFSKIEIFKSHPYFLPCLVSALIALFTSIVVFLGFKE THSDSSIHSKSSQGLENPQSRSSTDRLLDDGYTDYGAATSPTHSSCSSTSERPTLRSMLTSKVTLVIIVNYFFLS FTQMAYSVLMPLVYSTQLRFGGLGFNPYQIVSTHLARRDGGVGVGTCIYMAVQLFFQFMAWMGYGAIHVVVAETT PKPILGSINGIVQMAGRGFGLPCSGWDHSRRNCFQFGLTTVQREAYRVIENDIYAYLDVIIEQQNSSWLCTHHKT FSRRFVLLGATDQVRQDSRCGPFCLLFFRVMGPA* |
| Coding | >AgabiH97|117500 ATGATGTCATCCTGTGGGAGTGGGAGCGCGGCCATCTCTTGCCGTTGTACTCCGGATCATCGTTCGACGGAGACC GAGATGTTCGAAGCTCGATCTCCAAAAGAATTTCTTCCATATCCTCGCTCCGCAGTACAGTCTATTTTCTCCATG ACTTTCTCTCAGCGCGAAGATGATACAATTCCACAAGAGAACCTGAATTATGAAGTTGAACGTCCCTCAACACCA GTTCACTGGACAAGCGAAGATTCAGATGCTCTGGCAGCAGTTTCTTTCGAGGAACAAAGGTCACCACTCCCAAAA TTCCAATTATCCCTTGTCCTTCTCGTCCAGTTGTCAGAACCCATTACTGCACTTGTCATCTATCCTTTCATCAAT CAATTTATCCGCGACACTGGGATCACGAAAGGCGACGACAACTGGACAGGCTATTATGCCGGTATCATCGAATCC ACATTTTTCTTTACCGAAACTATCACCGTCTTTCATTGGGGATGGTTGTCTGATCGGATCGGTAGGAGACCCGTG CTGCTCCTAGGCCCGCTTGGTTTGACTTTCGCGATGCTCTGGTTTGGCTATTCAACTTCCTTCTGGCCGCTGATT TTCGCTCGTTCTTTCCAAGGAATGTTCAACGGTAACATTGGCGTATCTAAAACGGTCATGGTAGAACTGACTGAC GAGACAAATATTGGTGATGCTTTTGCAATGATGCCCTTCATGTGGAGTATAGGCTCGACTATTGCACCTTTCATA GGCGGCCCTTTGAGCAATCCGGCCCAAAGGTGGCCGCACGTGTTCAGCAAAATTGAGATTTTCAAGAGTCACCCT TACTTTTTGCCATGCCTCGTCTCTGCGCTTATTGCTTTGTTCACTTCTATTGTTGTATTCTTAGGTTTCAAAGAG ACACATTCGGACAGTTCAATTCATTCAAAAAGCAGCCAAGGCTTGGAAAATCCACAGTCCCGCAGCTCTACAGAT AGACTCCTGGACGATGGGTACACAGATTATGGCGCCGCCACAAGTCCGACCCATAGTTCCTGCTCTTCGACTTCT GAACGTCCGACCTTACGTTCAATGCTTACTTCCAAAGTGACGCTAGTGATCATCGTTAACTACTTTTTCCTCTCA TTCACACAGATGGCTTACTCCGTTCTCATGCCACTCGTTTATTCAACCCAACTTCGATTTGGTGGTCTGGGCTTC AACCCTTACCAGATTGTTTCGACCCATCTTGCCCGCCGCGATGGTGGCGTTGGAGTCGGCACTTGTATATACATG GCGGTTCAGCTTTTCTTCCAATTCATGGCATGGATGGGATACGGTGCGATTCATGTGGTCGTCGCTGAAACTACT CCCAAACCTATACTCGGATCCATAAATGGCATCGTCCAGATGGCTGGGAGGGGATTTGGTTTACCTTGTAGTGGT TGGGATCATTCTCGCCGGAATTGCTTTCAGTTTGGCCTTACCACGGTGCAAAGAGAAGCATACCGGGTAATAGAA AACGATATATACGCTTATCTTGATGTCATAATCGAACAACAAAACTCAAGTTGGCTGTGCACGCACCACAAGACA TTCTCACGACGCTTTGTCTTACTCGGAGCTACAGATCAGGTCCGGCAAGATTCGAGATGCGGCCCCTTCTGTCTC TTGTTCTTTAGAGTCATGGGTCCTGCTTGA |
| Transcript | >AgabiH97|117500 ATGATGTCATCCTGTGGGAGTGGGAGCGCGGCCATCTCTTGCCGTTGTACTCCGGATCATCGTTCGACGGAGACC GAGATGTTCGAAGCTCGATCTCCAAAAGAATTTCTTCCATATCCTCGCTCCGCAGTACAGTCTATTTTCTCCATG ACTTTCTCTCAGCGCGAAGATGATACAATTCCACAAGAGAACCTGAATTATGAAGTTGAACGTCCCTCAACACCA GTTCACTGGACAAGCGAAGATTCAGATGCTCTGGCAGCAGTTTCTTTCGAGGAACAAAGGTCACCACTCCCAAAA TTCCAATTATCCCTTGTCCTTCTCGTCCAGTTGTCAGAACCCATTACTGCACTTGTCATCTATCCTTTCATCAAT CAATTTATCCGCGACACTGGGATCACGAAAGGCGACGACAACTGGACAGGCTATTATGCCGGTATCATCGAATCC ACATTTTTCTTTACCGAAACTATCACCGTCTTTCATTGGGGATGGTTGTCTGATCGGATCGGTAGGAGACCCGTG CTGCTCCTAGGCCCGCTTGGTTTGACTTTCGCGATGCTCTGGTTTGGCTATTCAACTTCCTTCTGGCCGCTGATT TTCGCTCGTTCTTTCCAAGGAATGTTCAACGGTAACATTGGCGTATCTAAAACGGTCATGGTAGAACTGACTGAC GAGACAAATATTGGTGATGCTTTTGCAATGATGCCCTTCATGTGGAGTATAGGCTCGACTATTGCACCTTTCATA GGCGGCCCTTTGAGCAATCCGGCCCAAAGGTGGCCGCACGTGTTCAGCAAAATTGAGATTTTCAAGAGTCACCCT TACTTTTTGCCATGCCTCGTCTCTGCGCTTATTGCTTTGTTCACTTCTATTGTTGTATTCTTAGGTTTCAAAGAG ACACATTCGGACAGTTCAATTCATTCAAAAAGCAGCCAAGGCTTGGAAAATCCACAGTCCCGCAGCTCTACAGAT AGACTCCTGGACGATGGGTACACAGATTATGGCGCCGCCACAAGTCCGACCCATAGTTCCTGCTCTTCGACTTCT GAACGTCCGACCTTACGTTCAATGCTTACTTCCAAAGTGACGCTAGTGATCATCGTTAACTACTTTTTCCTCTCA TTCACACAGATGGCTTACTCCGTTCTCATGCCACTCGTTTATTCAACCCAACTTCGATTTGGTGGTCTGGGCTTC AACCCTTACCAGATTGTTTCGACCCATCTTGCCCGCCGCGATGGTGGCGTTGGAGTCGGCACTTGTATATACATG GCGGTTCAGCTTTTCTTCCAATTCATGGCATGGATGGGATACGGTGCGATTCATGTGGTCGTCGCTGAAACTACT CCCAAACCTATACTCGGATCCATAAATGGCATCGTCCAGATGGCTGGGAGGGGATTTGGTTTACCTTGTAGTGGT TGGGATCATTCTCGCCGGAATTGCTTTCAGTTTGGCCTTACCACGGTGCAAAGAGAAGCATACCGGGTAATAGAA AACGATATATACGCTTATCTTGATGTCATAATCGAACAACAAAACTCAAGTTGGCTGTGCACGCACCACAAGACA TTCTCACGACGCTTTGTCTTACTCGGAGCTACAGATCAGGTCCGGCAAGATTCGAGATGCGGCCCCTTCTGTCTC TTGTTCTTTAGAGTCATGGGTCCTGCTTGA |
| Gene | >AgabiH97|117500 ATGATGTCATCCTGTGGGAGTGGGAGCGCGGCCATCTCTTGCCGTTGTACTCCGGATCATCGTTCGACGGAGACC GAGATGTTCGAAGCTCGATCTCCAAAAGAATTTCTTCCGTAAGTCAACAAGTCGTCTCTGAAGTTGGATTGCTTC TTTGTCACATGTTTGGTCTACTGAACTCTCCACTCACTACATAAGATATCCTCGCTCCGCAGTACAGTCTATTTT CTCCATGACTTTCTCTCAGCGCGAAGATGATACAATTCCACAAGAGAACCTGAATTATGAAGTTGAACGTCCCTC AACACCAGTTCACTGGACAAGCGAAGATTCAGATGCTCTGGCAGCAGTTTCTTTCGAGGAACAAAGGTCACCACT CCCAAAATTCCAATTATCCCTTGTCCTTCTCGTCCAGTTGTCAGAACCCATTACTGCACTTGTCATCTATCCTTT CATCAATCAATTTATCCGCGACACTGGGATCACGAAAGGCGACGACAACTGGACAGGCTATTATGCCGGTATCAT CGTAAGTAGTATCATCTTATCACCTTGCAGATGTATACCCGTTATTCCTTCGCCATAGGAATCCACATTTTTCTT TACCGAAACTATCACCGTCTTTCATTGGGGATGGTTGTCTGATCGGATCGGTAGGAGACCCGTGCTGCTCCTAGG CCCGCTTGGTTTGACTTTCGCGATGCTCTGGTTTGGCTATTCAACTTCCTTCTGGCCGCTGATTTTCGCTCGTTC TTTCCAAGGAATGTTCAACGGTAACATTGGTATGTTTATCTCTTGGAGTGCTCCTTGTATACTGTTGCTCAAGTC TTTGTAGGCGTATCTAAAACGGTCATGGTAGAAGTCAGTTGTTAATCAAAAATGATGAAAGACTGTGGAGCTCAT CTGTTTAGCTGACTGACGAGACAAATATTGGTGATGCTTTTGCAATGATGCCCTTCATGTGGAGTATAGGCTCGA CTATTGCGTACGTTATGACACTTGGATCATCTAAACTTAAGTCCTTATCCGCACACTAGACCTTTCATAGGCGGC CCTTTGAGCAATCCGGCCCAAAGGTGGCCGCACGTGTTCAGCAAAATTGAGATTTTCAAGAGTCACCCTTACTTT TTGCCATGCCTCGTCTCTGCGCTTATTGCTTTGTTCACTTCTATTGTTGTATTCTTAGGTTTCAAAGAGGTTAGC ATTTACTTAAATCCCCGTGTCGTTTGGATTTATGCTGCTTGGGCAGACACATTCGGACAGTTCAATTCATTCAAA AAGCAGCCAAGGCTTGGAAAATCCACAGTCCCGCAGCTCTACAGATAGACTCCTGGACGATGGGTACACAGATTA TGGCGCCGCCACAAGTCCGACCCATAGTTCCTGCTCTTCGACTTCTGAACGTCCGACCTTACGTTCAATGCTTAC TTCCAAAGTGACGCTAGTGATCATCGTTAACTACTTTTTCCTCTCATTCACACAGATGGCTTACTCCGTTCTCAT GCCACTCGTTTATTCAACCCAACTTCGATTTGGTGGTCTGGGCTTCAACCCTTACCAGATTGGTATGATCATGGG TATCTGGGGTTTTTTGAATGCCTTCATACAGGTAGTCCTGCTTGGCAGATTAATCAGGGAGTGTGGAGCTGGCCT GATATATAAAATTTCCTATGCATCCTTTCTGATATGCTTCCTGATGTTCCCAGTTTCGACCCATCTTGCCCGCCG CGATGGTGGCGTTGGAGTCGGCACTTGTATATACATGGCGGTTCAGCTTTTCTTCCAATTCATGGCATGGATGGG ATACGGTTGGTCGGCCTTGTTGATTTCCTTGCTTCGCTCATTGAAGTATCGTAGGTGCGATTCATGTGGTCGTCG CTGAAACTACTCCCAAACCTATACTCGGATCCATAAATGGCATCGTCCAGATGGCTGGGTGCGCGGCTAGGACCA TTGCTCCTATCTCGGCATCTTCATTGTTTTCTATATCTATGGAGAGACAACTACTAGGAGGGGATTTGGTTTACC TTGTAGTGGTTGGGATCATTCTCGCCGGAATTGCTTTCAGTTTGGCCTTACCACGGTGCAAAGAGGTACAGTGCT AGCAGCCGTCCCTCATGGGTTGAACGGAGGTTCATACAGTGTCCTCTCCGCTTACAATTATTTGTCATAGAAGCA TACCGGGTAATAGAAAACGATATATACGCTTATCTTGATGTCATGTGAGTTTTAATTGTCATCAGCTCCTATCAT CGTCGTCAAGCACCAGTTCTTGTTCCACTCACTTCAACGAAAAACCCTCCCATCCATGCTAGACCATGATAATCC TCTCTTGCCAAGGCAGGCTTTCAACGGTCGTCATACTACTGCGTTGGATTGGTTCATAAGATATGACACCGCATC ACTCCTCTGACATATTGCTTGCATTCTCCTCGACGGAGGCTCACTAAACTTATGAAATAGAATCGAACAACAAAA CTCAAGTTGGCTGTGCACGCACCACAAGACATTCTCACGACGCTTTGTCTTACTCGGAGCTACAGATCAGGTCCG GCAAGATTCGAGATGCGGCCCCTTCTGTCTCTTGTTCTTTAGAGTCATGGGTCCTGCTTGA |