Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|116960
Gene name
Locationscaffold_9:872394..873678
Strand+
Gene length (bp)1284
Transcript length (bp)927
Coding sequence length (bp)927
Protein length (aa) 309

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08231 SYF2 SYF2 splicing factor 2.3E-59 123 303

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q4WPM6|SYF2_ASPFU Pre-mRNA-splicing factor syf2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf2 PE=3 SV=2 64 308 6.0E-40
sp|Q5BC69|SYF2_EMENI Pre-mRNA-splicing factor syf2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf2 PE=3 SV=1 30 308 3.0E-39
sp|Q521C0|SYF2_MAGO7 Pre-mRNA-splicing factor SYF2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SYF2 PE=3 SV=2 56 308 3.0E-37
sp|Q7RZK5|SYF2_NEUCR Pre-mRNA-splicing factor syf2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-4 PE=3 SV=1 73 308 2.0E-35
sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1 37 308 2.0E-32
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q4WPM6|SYF2_ASPFU Pre-mRNA-splicing factor syf2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf2 PE=3 SV=2 64 308 6.0E-40
sp|Q5BC69|SYF2_EMENI Pre-mRNA-splicing factor syf2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=syf2 PE=3 SV=1 30 308 3.0E-39
sp|Q521C0|SYF2_MAGO7 Pre-mRNA-splicing factor SYF2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SYF2 PE=3 SV=2 56 308 3.0E-37
sp|Q7RZK5|SYF2_NEUCR Pre-mRNA-splicing factor syf2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=msp-4 PE=3 SV=1 73 308 2.0E-35
sp|Q6DGP2|SYF2_DANRE Pre-mRNA-splicing factor syf2 OS=Danio rerio GN=syf2 PE=2 SV=1 37 308 2.0E-32
sp|Q4QRB2|SYF2_RAT Pre-mRNA-splicing factor SYF2 OS=Rattus norvegicus GN=Syf2 PE=2 SV=1 79 308 8.0E-29
sp|Q9D198|SYF2_MOUSE Pre-mRNA-splicing factor SYF2 OS=Mus musculus GN=Syf2 PE=2 SV=1 79 308 8.0E-29
sp|Q28G05|SYF2_XENTR Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1 61 308 1.0E-28
sp|O95926|SYF2_HUMAN Pre-mRNA-splicing factor SYF2 OS=Homo sapiens GN=SYF2 PE=1 SV=1 70 308 5.0E-28
sp|Q6DV01|SYF2_GECJA Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1 78 308 2.0E-27
sp|O59733|SYF2_SCHPO Pre-mRNA-splicing factor syf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=syf2 PE=1 SV=1 66 308 5.0E-26
sp|Q8AVQ6|SYF2_XENLA Pre-mRNA-splicing factor syf2 OS=Xenopus laevis GN=syf2 PE=2 SV=1 61 308 9.0E-25
sp|Q6BVE0|SYF2_DEBHA Pre-mRNA-splicing factor SYF2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SYF2 PE=3 SV=2 37 292 2.0E-24
sp|Q6CFW4|SYF2_YARLI Pre-mRNA-splicing factor SYF2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SYF2 PE=3 SV=1 77 308 3.0E-24
sp|Q612R3|SYF2_CAEBR Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis briggsae GN=syf-2 PE=3 SV=2 63 308 2.0E-22
sp|Q9V5Q4|SYF2_DROME Pre-mRNA-splicing factor Syf2 OS=Drosophila melanogaster GN=Syf2 PE=2 SV=1 63 308 2.0E-21
sp|Q09385|SYF2_CAEEL Pre-mRNA-splicing factor syf-2 OS=Caenorhabditis elegans GN=syf-2 PE=3 SV=3 63 308 6.0E-20
sp|Q28XK6|SYF2_DROPS Pre-mRNA-splicing factor Syf2 OS=Drosophila pseudoobscura pseudoobscura GN=Syf2 PE=3 SV=1 63 308 2.0E-18
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 104.37 62.81 145.94
Initials Initials knots 119.35 72.14 166.57
Pileal_Stipeal_center Stage I stipe center 160.15 91.44 228.86
Pileal_Stipeal_shell Stage I stipe shell 226.56 132.10 321.03
DIF_stipe_center Stage II stipe center 227.78 134.97 320.59
DIF_stipe_shell Stage II stipe shell 212.25 126.47 298.03
DIF_stipe_skin Stage II stipe skin 185.00 110.78 259.23
DIF_cap_skin Stage II cap skin 261.88 154.58 369.17
DIF_cap_tissue Stage II cap tissue 276.60 163.44 389.75
DIF_gill_tissue Stage II gill tissue 275.30 162.32 388.28
YFB_stipe_center Young fruiting body stipe center 194.96 115.04 274.87
YFB_stipe_shell Young fruiting body stipe shell 181.61 109.90 253.32
YFB_stipe_skin Young fruiting body stipe skin 172.92 104.50 241.34
YFB_cap_skin Young fruiting body cap skin 234.24 139.76 328.73
YFB_cap_tissue Young fruiting body cap tissue 264.97 157.27 372.66
YFB_gill_tissue Young fruiting body gill tissue 219.11 130.65 307.57
YFB_veil Young fruiting body veil 226.34 134.65 318.03

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.016949 yes
Casing YFB_stipe_shell 0.037818 yes
Casing YFB_stipe_skin 0.065465 no
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.002951 yes
Casing YFB_veil 0.001140 yes
Casing Initials 0.751981 no
Casing Pileal_Stipeal_center 0.138563 no
Casing Pileal_Stipeal_shell 0.001140 yes
Casing DIF_stipe_center 0.001140 yes
Casing DIF_stipe_shell 0.003765 yes
Casing DIF_stipe_skin 0.030851 yes
Casing DIF_cap_skin 0.000613 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.274355 no
DIF_gill_tissue YFB_stipe_shell 0.156383 no
DIF_gill_tissue YFB_stipe_skin 0.102511 no
DIF_gill_tissue YFB_cap_skin 0.698231 no
DIF_gill_tissue YFB_cap_tissue 0.944038 no
DIF_gill_tissue YFB_gill_tissue 0.525600 no
DIF_gill_tissue YFB_veil 0.610469 no
YFB_stipe_center YFB_stipe_shell 0.890586 no
YFB_stipe_center YFB_stipe_skin 0.793025 no
YFB_stipe_center YFB_cap_skin 0.648786 no
YFB_stipe_center YFB_cap_tissue 0.353026 no
YFB_stipe_center YFB_gill_tissue 0.798644 no
YFB_stipe_center YFB_veil 0.728193 no
YFB_stipe_shell YFB_stipe_skin 0.926328 no
YFB_stipe_shell YFB_cap_skin 0.463944 no
YFB_stipe_shell YFB_cap_tissue 0.208106 no
YFB_stipe_shell YFB_gill_tissue 0.624506 no
YFB_stipe_shell YFB_veil 0.549137 no
YFB_stipe_skin YFB_cap_skin 0.357118 no
YFB_stipe_skin YFB_cap_tissue 0.142501 no
YFB_stipe_skin YFB_gill_tissue 0.506942 no
YFB_stipe_skin YFB_veil 0.434476 no
YFB_cap_skin YFB_cap_tissue 0.786559 no
YFB_cap_skin YFB_gill_tissue 0.896088 no
YFB_cap_skin YFB_veil 0.950558 no
YFB_cap_tissue YFB_gill_tissue 0.621178 no
YFB_cap_tissue YFB_veil 0.704974 no
YFB_gill_tissue YFB_veil 0.953257 no
Initials DIF_gill_tissue 0.000613 yes
Initials YFB_stipe_center 0.078590 no
Initials YFB_stipe_shell 0.148101 no
Initials YFB_stipe_skin 0.219084 no
Initials YFB_cap_skin 0.006387 yes
Initials YFB_cap_tissue 0.001625 yes
Initials YFB_gill_tissue 0.018344 yes
Initials YFB_veil 0.012577 yes
Initials Pileal_Stipeal_center 0.381405 no
Initials Pileal_Stipeal_shell 0.012274 yes
Initials DIF_stipe_center 0.011968 yes
Initials DIF_stipe_shell 0.031323 yes
Initials DIF_stipe_skin 0.123208 no
Initials DIF_cap_skin 0.000613 yes
Initials DIF_cap_tissue 0.001140 yes
Pileal_Stipeal_center DIF_gill_tissue 0.057350 no
Pileal_Stipeal_center YFB_stipe_center 0.617037 no
Pileal_Stipeal_center YFB_stipe_shell 0.783030 no
Pileal_Stipeal_center YFB_stipe_skin 0.880340 no
Pileal_Stipeal_center YFB_cap_skin 0.231336 no
Pileal_Stipeal_center YFB_cap_tissue 0.079829 no
Pileal_Stipeal_center YFB_gill_tissue 0.337956 no
Pileal_Stipeal_center YFB_veil 0.284149 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.280957 no
Pileal_Stipeal_center DIF_stipe_center 0.281155 no
Pileal_Stipeal_center DIF_stipe_shell 0.406687 no
Pileal_Stipeal_center DIF_stipe_skin 0.738222 no
Pileal_Stipeal_center DIF_cap_skin 0.090321 no
Pileal_Stipeal_center DIF_cap_tissue 0.054170 no
Pileal_Stipeal_shell DIF_gill_tissue 0.616180 no
Pileal_Stipeal_shell YFB_stipe_center 0.724280 no
Pileal_Stipeal_shell YFB_stipe_shell 0.545481 no
Pileal_Stipeal_shell YFB_stipe_skin 0.429185 no
Pileal_Stipeal_shell YFB_cap_skin 0.953825 no
Pileal_Stipeal_shell YFB_cap_tissue 0.707494 no
Pileal_Stipeal_shell YFB_gill_tissue 0.951146 no
Pileal_Stipeal_shell YFB_veil 0.997941 no
Pileal_Stipeal_shell DIF_stipe_center 0.992110 no
Pileal_Stipeal_shell DIF_stipe_shell 0.896775 no
Pileal_Stipeal_shell DIF_stipe_skin 0.590358 no
Pileal_Stipeal_shell DIF_cap_skin 0.738373 no
Pileal_Stipeal_shell DIF_cap_tissue 0.600995 no
DIF_stipe_center DIF_gill_tissue 0.633980 no
DIF_stipe_center YFB_stipe_center 0.715678 no
DIF_stipe_center YFB_stipe_shell 0.539647 no
DIF_stipe_center YFB_stipe_skin 0.421541 no
DIF_stipe_center YFB_cap_skin 0.962323 no
DIF_stipe_center YFB_cap_tissue 0.723367 no
DIF_stipe_center YFB_gill_tissue 0.944360 no
DIF_stipe_center YFB_veil 0.990210 no
DIF_stipe_center DIF_stipe_shell 0.888731 no
DIF_stipe_center DIF_stipe_skin 0.581553 no
DIF_stipe_center DIF_cap_skin 0.753645 no
DIF_stipe_center DIF_cap_tissue 0.618769 no
DIF_stipe_shell DIF_gill_tissue 0.451438 no
DIF_stipe_shell YFB_stipe_center 0.861682 no
DIF_stipe_shell YFB_stipe_shell 0.702338 no
DIF_stipe_shell YFB_stipe_skin 0.582808 no
DIF_stipe_shell YFB_cap_skin 0.834188 no
DIF_stipe_shell YFB_cap_tissue 0.538285 no
DIF_stipe_shell YFB_gill_tissue 0.952745 no
DIF_stipe_shell YFB_veil 0.900714 no
DIF_stipe_shell DIF_stipe_skin 0.743025 no
DIF_stipe_shell DIF_cap_skin 0.571212 no
DIF_stipe_shell DIF_cap_tissue 0.433061 no
DIF_stipe_skin DIF_gill_tissue 0.179455 no
DIF_stipe_skin YFB_stipe_center 0.921831 no
DIF_stipe_skin YFB_stipe_shell 0.973747 no
DIF_stipe_skin YFB_stipe_skin 0.895956 no
DIF_stipe_skin YFB_cap_skin 0.511724 no
DIF_stipe_skin YFB_cap_tissue 0.239320 no
DIF_stipe_skin YFB_gill_tissue 0.672886 no
DIF_stipe_skin YFB_veil 0.594956 no
DIF_stipe_skin DIF_cap_skin 0.260921 no
DIF_stipe_skin DIF_cap_tissue 0.168023 no
DIF_cap_skin DIF_gill_tissue 0.927879 no
DIF_cap_skin YFB_stipe_center 0.371399 no
DIF_cap_skin YFB_stipe_shell 0.222588 no
DIF_cap_skin YFB_stipe_skin 0.153833 no
DIF_cap_skin YFB_cap_skin 0.814892 no
DIF_cap_skin YFB_cap_tissue 0.983370 no
DIF_cap_skin YFB_gill_tissue 0.652111 no
DIF_cap_skin YFB_veil 0.735060 no
DIF_cap_skin DIF_cap_tissue 0.919509 no
DIF_cap_tissue DIF_gill_tissue 0.992840 no
DIF_cap_tissue YFB_stipe_center 0.262890 no
DIF_cap_tissue YFB_stipe_shell 0.148790 no
DIF_cap_tissue YFB_stipe_skin 0.097776 no
DIF_cap_tissue YFB_cap_skin 0.688094 no
DIF_cap_tissue YFB_cap_tissue 0.936139 no
DIF_cap_tissue YFB_gill_tissue 0.514500 no
DIF_cap_tissue YFB_veil 0.602293 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|116960
MDSMTTDKTESPARNADIVEAALDTTKDRSLDQREDSSEETTTPETEGNGEGEESGEGKKVSMKDREAKLALLRK
RFHDSSKANRQSLIEESAKAKLNTRELARLERQRALADMLRLKADAEERGEDVERFRNWEYTIEDNENWEKKLKR
KKRRADFEFHDASHATRRKYKRDLDLLEPDLEAYKRQKALATGGILNSFDASGSTNSSLVPTSSSVEQKIAHDNF
YRDSSTLIYADDKPSEDAIDRVVSKINKDIDKRGKFSRQRLNEPEGDVTYINEPNRVFNKKISRFYDKYTADIRA
SFERGTAL*
Coding >AgabiH97|116960
ATGGACTCTATGACAACAGACAAAACTGAAAGTCCTGCACGAAATGCCGATATAGTAGAGGCTGCTCTGGATACT
ACCAAGGACAGGTCACTAGACCAGAGGGAGGATTCATCGGAAGAGACAACAACACCTGAGACGGAGGGAAATGGA
GAAGGTGAAGAGAGCGGGGAGGGAAAGAAGGTGAGTATGAAAGATAGGGAAGCAAAGTTGGCTTTGTTACGAAAG
AGATTCCATGATTCTTCCAAAGCAAACAGACAATCTCTCATCGAGGAAAGTGCGAAAGCGAAATTGAATACTAGA
GAACTTGCGCGGTTGGAAAGACAAAGAGCATTAGCGGATATGTTGAGGTTGAAGGCGGATGCGGAGGAAAGAGGG
GAGGATGTTGAGAGGTTTAGGAATTGGGAGTATACGATTGAGGATAATGAGAATTGGGAGAAAAAGTTGAAGAGG
AAGAAGAGGAGAGCGGATTTTGAGTTTCATGATGCAAGTCATGCTACTCGGCGCAAGTATAAACGAGATTTAGAT
CTTCTTGAACCGGATCTTGAAGCTTATAAACGACAAAAAGCACTTGCTACAGGTGGTATACTCAATTCCTTTGAC
GCAAGTGGCAGTACCAATTCGTCTCTTGTCCCAACATCGAGTTCGGTTGAACAAAAGATTGCTCATGATAACTTT
TATCGGGACAGTTCGACACTTATTTATGCTGATGATAAACCGAGCGAGGACGCTATTGATCGTGTCGTCAGTAAG
ATCAATAAAGATATCGACAAGCGAGGCAAATTTTCACGACAACGGCTTAACGAACCCGAAGGAGACGTTACTTAT
ATCAATGAACCAAATCGCGTGTTCAACAAGAAGATATCGAGATTCTACGACAAGTATACGGCAGATATTCGTGCT
AGTTTCGAACGTGGTACAGCTTTGTAG
Transcript >AgabiH97|116960
ATGGACTCTATGACAACAGACAAAACTGAAAGTCCTGCACGAAATGCCGATATAGTAGAGGCTGCTCTGGATACT
ACCAAGGACAGGTCACTAGACCAGAGGGAGGATTCATCGGAAGAGACAACAACACCTGAGACGGAGGGAAATGGA
GAAGGTGAAGAGAGCGGGGAGGGAAAGAAGGTGAGTATGAAAGATAGGGAAGCAAAGTTGGCTTTGTTACGAAAG
AGATTCCATGATTCTTCCAAAGCAAACAGACAATCTCTCATCGAGGAAAGTGCGAAAGCGAAATTGAATACTAGA
GAACTTGCGCGGTTGGAAAGACAAAGAGCATTAGCGGATATGTTGAGGTTGAAGGCGGATGCGGAGGAAAGAGGG
GAGGATGTTGAGAGGTTTAGGAATTGGGAGTATACGATTGAGGATAATGAGAATTGGGAGAAAAAGTTGAAGAGG
AAGAAGAGGAGAGCGGATTTTGAGTTTCATGATGCAAGTCATGCTACTCGGCGCAAGTATAAACGAGATTTAGAT
CTTCTTGAACCGGATCTTGAAGCTTATAAACGACAAAAAGCACTTGCTACAGGTGGTATACTCAATTCCTTTGAC
GCAAGTGGCAGTACCAATTCGTCTCTTGTCCCAACATCGAGTTCGGTTGAACAAAAGATTGCTCATGATAACTTT
TATCGGGACAGTTCGACACTTATTTATGCTGATGATAAACCGAGCGAGGACGCTATTGATCGTGTCGTCAGTAAG
ATCAATAAAGATATCGACAAGCGAGGCAAATTTTCACGACAACGGCTTAACGAACCCGAAGGAGACGTTACTTAT
ATCAATGAACCAAATCGCGTGTTCAACAAGAAGATATCGAGATTCTACGACAAGTATACGGCAGATATTCGTGCT
AGTTTCGAACGTGGTACAGCTTTGTAG
Gene >AgabiH97|116960
ATGGACTCTATGACAACAGACAAAACTGAAAGTCCTGCACGAAATGCCGATATAGTAGAGGCTGCTCTGGATACT
ACCAAGGACAGGTCACTAGACCAGAGGGAGGATTCATCGGAAGAGACAACAACACCTGAGACGGAGGGAAATGGA
GAAGGTGAAGAGAGCGGGGAGGGAAAGAAGGTGAGTATGAAAGATAGGGAAGCAAAGTTGGCTTTGTTACGAAAG
AGATTCGTAAGTCTCTTTCTTGTCTCCAAATTTGAAAAACAAAATCCCTCAATTCAAAACAAAATTCTTCTTATT
TCTCATATCATTATAGCATGATTCTTCCAAAGCAAACAGACAATCTCTCATCGAGGAAAGTGCGAAAGCGAAATT
GAATACTAGAGAACTTGCGCGGTTGGAAAGACAAAGAGCATTAGCGGATATGTTGAGGTTGAAGGCGGATGCGGA
GGAAAGAGGGGAGGATGTTGAGAGGTTTAGGAATTGGGAGTATACGATTGAGGATAATGAGAATTGGGAGAAAAA
GTTGAAGAGGAAGAAGAGGAGAGCGGATTTTGAGTTTCATGGTAAAGTTTTTCTTAAATTGATTTTTTTTTTTTT
GTGGGAGAGGTTGTCTAACTTTTTTTTTTTTGGTTTTTGGTAGATGCAAGTCATGCTACTCGGCGCAAGTATAAA
CGAGATTTAGATCTTCTTGAACCGGATCTTGAAGCTTATAAACGACAAAAAGCACTTGCTACAGGTGGTATACTC
AATTCCTTTGACGCAAGTGGCAGTACCAATTCGTCTCTTGTCCCAGTGCGTATATATATATATATAAACAGAAAA
ACATATAGAACAACAACTGACAAAAAAAAAATCATTTTTTAGACATCGAGTTCGGTTGAACAAAAGATTGCTCAT
GATAACTTTTATCGGGACAGTTCGACACTTATTTATGCTGATGATAAACCGAGCGAGGACGCTATTGATCGTGTC
GTCAGTAAGATCAATAAAGAGTAAGCAACCTCTCCTCCCTTCCTCGAAGCTGAAACTTCACGTTCTGACAATCTT
TTTATTATTATTATAGTATCGACAAGCGAGGCAAATTTTCACGACAACGGCTTAACGAACCCGAAGGAGACGTTA
CTTATATCAATGAACCAAATCGCGTGTTCAACAAGAAGGTACGTCATATTCTCGTGCGCGCAATTCTAATGTGAC
TCAAAAGCGCCTTAGATATCGAGATTCTACGACAAGTATACGGCAGATATTCGTGCTAGTTTCGAACGTGGTACA
GCTTTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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