Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|116850
Gene name
Locationscaffold_9:839551..840880
Strand+
Gene length (bp)1329
Transcript length (bp)1329
Coding sequence length (bp)1329
Protein length (aa) 443

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00010 HLH Helix-loop-helix DNA-binding domain 1.1E-09 91 184

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.3084 0.9331 0.0267 0.0101 0.2037 0.0005 0.0505 0.0583 0.0329 0.0072

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Helix-loop-helix

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup5062
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|116850
Agaricus bisporus var bisporus H97 AgabiH97|116850 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|106_13

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|116850
MSHATNSVYAASCNLPRRAKRPRNDISPAAAVSPTQPRPLLPALSLRPSSSNTSSASPTLPSTSESTVSNPPGKR
GRKPGPLSRSAREAQRRLNHSIIEKARRTKINNALATLKELVPPDYGRKAKQQDLTSDEEDDSDNDDGDGDYGDG
KKKSKAKPTRRKEEREREYKLEVLVRTVAYMQDLLQRVAKLEQDSAVCHKCGSLTTEENPTQPEPSTEALATLCT
TSPSTDPSDAEDRGRTKRARLVPSRHPEPAEFTAASPLGGAFGDSTSTHRLPSISSWLPETLLDPSGLTCSPSCI
NHQRNKEFIPPLQLLTPPSFPHFDPVTPTSGLAASLTPSVSRPSRNMQQQKPISPMLIRTAEDEHAATMLLQISS
RGSSSNSSPIFRPLPPSVIPTTECLSSMSSKLPSAFTSKGDLNLALNPRDLSIQTPASFLGLMTPIL*
Coding >AgabiH97|116850
ATGTCTCATGCCACCAATAGCGTCTATGCTGCCAGTTGCAATCTCCCGAGGCGAGCTAAACGCCCTCGGAACGAC
ATCAGTCCAGCTGCCGCAGTCTCTCCTACTCAGCCAAGACCACTTTTGCCTGCCTTATCTTTAAGGCCTTCTAGC
AGCAACACTTCTTCTGCGTCTCCCACTCTGCCGTCTACCTCAGAGTCGACTGTTTCCAACCCTCCCGGTAAACGT
GGCAGAAAGCCCGGACCCCTCTCCCGTTCTGCGCGGGAGGCCCAACGGCGATTGAATCATTCAATCATCGAGAAA
GCTCGTAGGACAAAAATAAACAATGCTCTGGCGACATTGAAAGAACTCGTGCCACCTGATTACGGCAGGAAGGCA
AAACAACAGGATCTGACTTCGGACGAAGAGGATGATTCGGACAACGACGACGGAGATGGAGACTATGGAGACGGT
AAGAAAAAATCGAAAGCCAAGCCGACGCGGAGAAAAGAAGAGAGAGAGCGAGAATATAAACTGGAGGTTCTTGTT
CGAACGGTGGCATACATGCAGGATCTACTCCAGCGTGTGGCCAAGCTCGAACAGGACAGCGCTGTTTGTCACAAG
TGTGGCAGTCTTACCACTGAGGAAAACCCTACGCAGCCTGAGCCCAGCACCGAGGCACTTGCTACCCTTTGCACC
ACCAGCCCGTCCACGGATCCCTCTGATGCTGAAGATCGTGGCCGTACAAAACGTGCTCGCCTAGTTCCCTCCCGC
CATCCAGAGCCTGCAGAATTTACTGCGGCTTCGCCCTTAGGTGGCGCTTTTGGAGACAGTACCAGTACGCATCGC
CTCCCGTCAATCTCATCTTGGCTCCCCGAAACTCTCCTTGATCCATCTGGATTGACATGTTCTCCCTCTTGTATA
AATCATCAACGCAACAAAGAATTTATACCTCCCTTGCAACTTCTCACTCCTCCCTCGTTCCCTCATTTCGATCCT
GTTACACCTACGAGTGGTCTTGCTGCGTCATTGACGCCATCGGTCTCTCGGCCGTCGAGAAACATGCAACAGCAA
AAACCAATTTCGCCTATGCTGATACGTACTGCGGAGGATGAACATGCTGCTACTATGCTACTCCAAATCAGTAGC
CGCGGTTCCAGCTCCAATTCCTCTCCTATATTTCGTCCTTTGCCGCCTTCTGTCATCCCCACTACTGAATGTCTC
TCGTCAATGTCGTCGAAATTGCCATCCGCTTTCACAAGTAAGGGTGATCTGAACCTGGCTTTGAATCCCAGAGAT
TTATCTATTCAGACGCCTGCCAGTTTCCTTGGCTTGATGACACCTATCTTATAA
Transcript >AgabiH97|116850
ATGTCTCATGCCACCAATAGCGTCTATGCTGCCAGTTGCAATCTCCCGAGGCGAGCTAAACGCCCTCGGAACGAC
ATCAGTCCAGCTGCCGCAGTCTCTCCTACTCAGCCAAGACCACTTTTGCCTGCCTTATCTTTAAGGCCTTCTAGC
AGCAACACTTCTTCTGCGTCTCCCACTCTGCCGTCTACCTCAGAGTCGACTGTTTCCAACCCTCCCGGTAAACGT
GGCAGAAAGCCCGGACCCCTCTCCCGTTCTGCGCGGGAGGCCCAACGGCGATTGAATCATTCAATCATCGAGAAA
GCTCGTAGGACAAAAATAAACAATGCTCTGGCGACATTGAAAGAACTCGTGCCACCTGATTACGGCAGGAAGGCA
AAACAACAGGATCTGACTTCGGACGAAGAGGATGATTCGGACAACGACGACGGAGATGGAGACTATGGAGACGGT
AAGAAAAAATCGAAAGCCAAGCCGACGCGGAGAAAAGAAGAGAGAGAGCGAGAATATAAACTGGAGGTTCTTGTT
CGAACGGTGGCATACATGCAGGATCTACTCCAGCGTGTGGCCAAGCTCGAACAGGACAGCGCTGTTTGTCACAAG
TGTGGCAGTCTTACCACTGAGGAAAACCCTACGCAGCCTGAGCCCAGCACCGAGGCACTTGCTACCCTTTGCACC
ACCAGCCCGTCCACGGATCCCTCTGATGCTGAAGATCGTGGCCGTACAAAACGTGCTCGCCTAGTTCCCTCCCGC
CATCCAGAGCCTGCAGAATTTACTGCGGCTTCGCCCTTAGGTGGCGCTTTTGGAGACAGTACCAGTACGCATCGC
CTCCCGTCAATCTCATCTTGGCTCCCCGAAACTCTCCTTGATCCATCTGGATTGACATGTTCTCCCTCTTGTATA
AATCATCAACGCAACAAAGAATTTATACCTCCCTTGCAACTTCTCACTCCTCCCTCGTTCCCTCATTTCGATCCT
GTTACACCTACGAGTGGTCTTGCTGCGTCATTGACGCCATCGGTCTCTCGGCCGTCGAGAAACATGCAACAGCAA
AAACCAATTTCGCCTATGCTGATACGTACTGCGGAGGATGAACATGCTGCTACTATGCTACTCCAAATCAGTAGC
CGCGGTTCCAGCTCCAATTCCTCTCCTATATTTCGTCCTTTGCCGCCTTCTGTCATCCCCACTACTGAATGTCTC
TCGTCAATGTCGTCGAAATTGCCATCCGCTTTCACAAGTAAGGGTGATCTGAACCTGGCTTTGAATCCCAGAGAT
TTATCTATTCAGACGCCTGCCAGTTTCCTTGGCTTGATGACACCTATCTTATAA
Gene >AgabiH97|116850
ATGTCTCATGCCACCAATAGCGTCTATGCTGCCAGTTGCAATCTCCCGAGGCGAGCTAAACGCCCTCGGAACGAC
ATCAGTCCAGCTGCCGCAGTCTCTCCTACTCAGCCAAGACCACTTTTGCCTGCCTTATCTTTAAGGCCTTCTAGC
AGCAACACTTCTTCTGCGTCTCCCACTCTGCCGTCTACCTCAGAGTCGACTGTTTCCAACCCTCCCGGTAAACGT
GGCAGAAAGCCCGGACCCCTCTCCCGTTCTGCGCGGGAGGCCCAACGGCGATTGAATCATTCAATCATCGAGAAA
GCTCGTAGGACAAAAATAAACAATGCTCTGGCGACATTGAAAGAACTCGTGCCACCTGATTACGGCAGGAAGGCA
AAACAACAGGATCTGACTTCGGACGAAGAGGATGATTCGGACAACGACGACGGAGATGGAGACTATGGAGACGGT
AAGAAAAAATCGAAAGCCAAGCCGACGCGGAGAAAAGAAGAGAGAGAGCGAGAATATAAACTGGAGGTTCTTGTT
CGAACGGTGGCATACATGCAGGATCTACTCCAGCGTGTGGCCAAGCTCGAACAGGACAGCGCTGTTTGTCACAAG
TGTGGCAGTCTTACCACTGAGGAAAACCCTACGCAGCCTGAGCCCAGCACCGAGGCACTTGCTACCCTTTGCACC
ACCAGCCCGTCCACGGATCCCTCTGATGCTGAAGATCGTGGCCGTACAAAACGTGCTCGCCTAGTTCCCTCCCGC
CATCCAGAGCCTGCAGAATTTACTGCGGCTTCGCCCTTAGGTGGCGCTTTTGGAGACAGTACCAGTACGCATCGC
CTCCCGTCAATCTCATCTTGGCTCCCCGAAACTCTCCTTGATCCATCTGGATTGACATGTTCTCCCTCTTGTATA
AATCATCAACGCAACAAAGAATTTATACCTCCCTTGCAACTTCTCACTCCTCCCTCGTTCCCTCATTTCGATCCT
GTTACACCTACGAGTGGTCTTGCTGCGTCATTGACGCCATCGGTCTCTCGGCCGTCGAGAAACATGCAACAGCAA
AAACCAATTTCGCCTATGCTGATACGTACTGCGGAGGATGAACATGCTGCTACTATGCTACTCCAAATCAGTAGC
CGCGGTTCCAGCTCCAATTCCTCTCCTATATTTCGTCCTTTGCCGCCTTCTGTCATCCCCACTACTGAATGTCTC
TCGTCAATGTCGTCGAAATTGCCATCCGCTTTCACAAGTAAGGGTGATCTGAACCTGGCTTTGAATCCCAGAGAT
TTATCTATTCAGACGCCTGCCAGTTTCCTTGGCTTGATGACACCTATCTTATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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