Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|116510
Gene name
Locationscaffold_9:755276..757234
Strand+
Gene length (bp)1958
Transcript length (bp)1365
Coding sequence length (bp)1365
Protein length (aa) 455

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase 2.4E-77 42 416

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1 36 446 0.0E+00
sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 8 445 0.0E+00
sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 39 445 0.0E+00
sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 36 450 0.0E+00
sp|Q9SLK0|ICDHX_ARATH Peroxisomal isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=ICDH PE=1 SV=1 38 445 0.0E+00
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Swissprot ID Swissprot Description Start End E-value
sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1 36 446 0.0E+00
sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 8 445 0.0E+00
sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 39 445 0.0E+00
sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1 36 450 0.0E+00
sp|Q9SLK0|ICDHX_ARATH Peroxisomal isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=ICDH PE=1 SV=1 38 445 0.0E+00
sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1 36 450 0.0E+00
sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=idp1 PE=3 SV=2 28 445 0.0E+00
sp|Q9SRZ6|ICDHC_ARATH Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana GN=CICDH PE=2 SV=1 38 446 0.0E+00
sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3 35 445 0.0E+00
sp|Q8LPJ5|ICDHP_ARATH Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At5g14590 PE=2 SV=1 10 447 0.0E+00
sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP2 PE=1 SV=2 39 450 0.0E+00
sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium discoideum GN=idhM PE=3 SV=1 19 437 0.0E+00
sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingobium yanoikuyae GN=icd PE=3 SV=1 39 446 0.0E+00
sp|P9WKL1|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=icd PE=1 SV=1 37 447 0.0E+00
sp|P9WKL0|IDH_MYCTO Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=icd PE=3 SV=1 37 447 0.0E+00
sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=icd PE=3 SV=1 37 447 0.0E+00
sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP3 PE=3 SV=1 39 442 0.0E+00
sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 38 445 0.0E+00
sp|P79089|IDHP_ASPNG Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1 21 448 0.0E+00
sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1 36 450 0.0E+00
sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=2 36 450 0.0E+00
sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 25 446 0.0E+00
sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1 36 450 0.0E+00
sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 8 448 0.0E+00
sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 38 446 0.0E+00
sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1 36 450 0.0E+00
sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 28 445 0.0E+00
sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1 23 443 0.0E+00
sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IDP1 PE=1 SV=1 24 445 0.0E+00
sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1 PE=2 SV=2 36 450 0.0E+00
sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 8 445 0.0E+00
sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2 36 450 0.0E+00
sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 8 445 0.0E+00
sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 8 445 0.0E+00
sp|P40495|LYS12_YEAST Homoisocitrate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYS12 PE=1 SV=1 242 368 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|116510
MRPAQTRHLRVISQLSAYSNNGLRSFSSSARRYQGMSKKIVVKNPVVELDGDEMTRIIWKKIREELILPYLQLDL
KYYDLGLEYRDKTNDQVTIEAAKAIQKYNVGVKCATITPDEARVEEFKLKEMWKSPNGTIRNILGGTVFREPIIL
QRIPRPIPGWVKPICIGRHAFGDQYRSTDYVVPGPGKLQLVFTPKDGSQPVSMNVFDFEGPGVAMSMYNTDESIT
GFAHASFKMAISKKMPLFMSTKNTILKRYDGRFKDIFQEIYESTYKPQFEAAGIYYEHRLIDDMVAQAIKSSGGF
VWACKNYDGDVQSDILAQGFGSLGMMTSELLTPDGQIIESEAAHGTVTRHYREWQKGNETSTNPVASIFAWTRGL
LHRAKLDKNEPLKQFCLDLESACVEVIDKDGVMTKDLAIAIHGVKNVKREHWVITDAYLDAVNAKLRRKLSDRGL
GTKL*
Coding >AgabiH97|116510
ATGCGGCCAGCTCAAACTCGTCACCTCCGCGTAATTTCGCAGCTATCTGCGTATTCTAACAATGGCCTCCGGAGC
TTCTCTTCTTCGGCCAGACGATATCAAGGCATGTCTAAAAAGATTGTCGTGAAGAATCCCGTTGTGGAGCTGGAT
GGCGACGAGATGACCAGGATCATCTGGAAAAAGATCCGAGAAGAGCTCATTCTCCCGTACCTTCAACTTGACCTC
AAGTACTATGATCTAGGCCTGGAATACCGTGACAAGACAAACGACCAAGTTACTATCGAGGCCGCTAAGGCCATT
CAGAAATATAATGTTGGTGTCAAATGTGCGACCATCACTCCTGATGAGGCCCGTGTAGAAGAGTTCAAACTGAAG
GAGATGTGGAAGAGTCCAAATGGCACTATTCGTAACATCCTCGGAGGAACTGTCTTCCGTGAACCTATCATTCTG
CAGCGTATTCCCCGACCCATCCCAGGATGGGTGAAGCCTATTTGTATTGGTCGTCATGCTTTCGGTGATCAGTAC
CGCTCGACGGACTACGTTGTTCCTGGACCTGGAAAGCTCCAACTGGTTTTCACCCCTAAGGATGGCTCTCAACCA
GTTTCCATGAACGTGTTCGATTTCGAAGGACCTGGTGTTGCTATGAGCATGTACAATACTGACGAATCCATCACT
GGGTTTGCGCACGCTTCTTTCAAAATGGCCATTTCCAAGAAAATGCCCTTGTTCATGTCTACGAAAAACACCATC
CTGAAGAGATATGATGGTCGCTTCAAAGACATCTTCCAGGAGATCTATGAATCAACCTACAAACCTCAATTTGAA
GCCGCTGGCATCTATTACGAACATCGTTTGATCGACGACATGGTCGCCCAAGCCATTAAATCCTCGGGTGGTTTC
GTTTGGGCCTGCAAAAACTACGATGGCGACGTCCAATCCGACATTCTCGCTCAGGGTTTCGGTTCCCTCGGTATG
ATGACTTCAGAACTCTTGACACCCGACGGTCAAATCATCGAATCCGAAGCTGCTCATGGAACAGTTACAAGGCAT
TATCGGGAATGGCAAAAGGGTAATGAGACGTCGACTAATCCTGTTGCATCCATTTTTGCTTGGACGAGAGGGTTG
TTGCATAGGGCGAAGCTTGATAAGAATGAGCCTTTGAAACAGTTTTGTTTGGACTTGGAGAGCGCTTGTGTTGAG
GTTATTGATAAGGATGGTGTGATGACCAAGGATCTTGCGATTGCGATTCATGGAGTCAAGAATGTGAAGAGGGAA
CACTGGGTTATCACGGATGCCTACCTGGACGCCGTCAATGCCAAGCTGCGGAGGAAGCTCTCAGATCGCGGTTTA
GGGACCAAGCTTTAA
Transcript >AgabiH97|116510
ATGCGGCCAGCTCAAACTCGTCACCTCCGCGTAATTTCGCAGCTATCTGCGTATTCTAACAATGGCCTCCGGAGC
TTCTCTTCTTCGGCCAGACGATATCAAGGCATGTCTAAAAAGATTGTCGTGAAGAATCCCGTTGTGGAGCTGGAT
GGCGACGAGATGACCAGGATCATCTGGAAAAAGATCCGAGAAGAGCTCATTCTCCCGTACCTTCAACTTGACCTC
AAGTACTATGATCTAGGCCTGGAATACCGTGACAAGACAAACGACCAAGTTACTATCGAGGCCGCTAAGGCCATT
CAGAAATATAATGTTGGTGTCAAATGTGCGACCATCACTCCTGATGAGGCCCGTGTAGAAGAGTTCAAACTGAAG
GAGATGTGGAAGAGTCCAAATGGCACTATTCGTAACATCCTCGGAGGAACTGTCTTCCGTGAACCTATCATTCTG
CAGCGTATTCCCCGACCCATCCCAGGATGGGTGAAGCCTATTTGTATTGGTCGTCATGCTTTCGGTGATCAGTAC
CGCTCGACGGACTACGTTGTTCCTGGACCTGGAAAGCTCCAACTGGTTTTCACCCCTAAGGATGGCTCTCAACCA
GTTTCCATGAACGTGTTCGATTTCGAAGGACCTGGTGTTGCTATGAGCATGTACAATACTGACGAATCCATCACT
GGGTTTGCGCACGCTTCTTTCAAAATGGCCATTTCCAAGAAAATGCCCTTGTTCATGTCTACGAAAAACACCATC
CTGAAGAGATATGATGGTCGCTTCAAAGACATCTTCCAGGAGATCTATGAATCAACCTACAAACCTCAATTTGAA
GCCGCTGGCATCTATTACGAACATCGTTTGATCGACGACATGGTCGCCCAAGCCATTAAATCCTCGGGTGGTTTC
GTTTGGGCCTGCAAAAACTACGATGGCGACGTCCAATCCGACATTCTCGCTCAGGGTTTCGGTTCCCTCGGTATG
ATGACTTCAGAACTCTTGACACCCGACGGTCAAATCATCGAATCCGAAGCTGCTCATGGAACAGTTACAAGGCAT
TATCGGGAATGGCAAAAGGGTAATGAGACGTCGACTAATCCTGTTGCATCCATTTTTGCTTGGACGAGAGGGTTG
TTGCATAGGGCGAAGCTTGATAAGAATGAGCCTTTGAAACAGTTTTGTTTGGACTTGGAGAGCGCTTGTGTTGAG
GTTATTGATAAGGATGGTGTGATGACCAAGGATCTTGCGATTGCGATTCATGGAGTCAAGAATGTGAAGAGGGAA
CACTGGGTTATCACGGATGCCTACCTGGACGCCGTCAATGCCAAGCTGCGGAGGAAGCTCTCAGATCGCGGTTTA
GGGACCAAGCTTTAA
Gene >AgabiH97|116510
ATGCGGCCAGCTCAAACTCGTCACCTCCGCGTAATTTCGCAGCTATCTGCGTATTCTAACAATGGCCTCCGGAGC
TTCTCTTCTTCGGCCAGACGATGTGAGTGCGTTTGTCCTACTCTGGAGACTCGTATCCGCGTTGCGGCACCCCGT
TATCCCATCTTTTGACTTCCTTACCCTTCCTTTTAAGTATTTGTATCCACACACACTCTCAGCGACGATTCGCTG
ACTCCTTTTTCTCTTCCCTACTATCACAGATCAAGGCATGTCTAAAAAGATTGTCGTGAAGAATCCCGTTGTGGA
GCTGGATGGCGACGAGATGACCAGGATCATCTGGAAAAAGATCCGAGAAGAGGCACGTCATATACCCTTCCAGCA
TTTCGCTTTGCTCTGTATTAATCTTCGTTTTCTCTTCACTATATAGCTCATTCTCCCGTACCTTCAACTTGACCT
CAAGTACTATGATCTAGGCCTGGAATACCGTGACAAGGTCCGCGTTATTCTCATCCTTTCGCTCTCACGCAGTTG
TCAACCATAACTCGTAGACAAACGACCAAGTTACTATCGAGGCCGCTAAGGCCATTCAGAAATATAATGTTGGTG
TCAAATGTGCGACCATCACTCCTGATGAGGCCCGTGTAGAAGAGTTCAAACTGAAGGAGATGTGGAAGAGTCCAA
ATGGCACTGTACGTCCCACTGTTCCTTGCTCAGGACTGGCATTAATCATAAGTGCTAGATTCGTAACATCCTCGG
AGGAACTGTCTTCCGTGAACCTATCATTCTGCAGCGTATTCCCCGACCCATCCCAGGATGGGTGAAGCCTATTTG
TATTGGTCGTCATGCTTTCGGTGATCAGGTATGACTATAATTTCTATATAGTGGGCGCATCCAACTGAATTCTTC
AGTACCGCTCGACGGACTACGTTGTTCCTGGACCTGGAAAGCTCCAACTGGTTTTCACCCCTAAGGATGGCTCTC
AACCAGTTTCCATGAACGTGTTCGATTTCGAAGGACCTGGTGTTGCTATGAGCATGTACAATACTGACGAAGTAT
GCCTCTCCACCGTTGCTCAATAACCGCATACTAACCCCGGGTTCTAGTCCATCACTGGGTTTGCGCACGCTTCTT
TCAAAATGGCCATTTCCAAGAAAATGCCCTTGGTATGTCATTTATCTAAGTGTAGAGGACATTTTGCCTCATGTA
TGCGTTAGTTCATGTCTACGAAAAACACCATCCTGAAGAGATATGATGGTCGCTTCAAAGACATCTTCCAGGAGA
TCTATGAATCGTAAGTTCGTCTCTATAAATATGTATGCCACGCTATTGACGTTCAATATCTCCGTAGAACCTACA
AACCTCAATTTGAAGCCGCTGGCATCTATTACGAACATCGTTTGATCGACGACATGGTCGCCCAAGCCATTAAAT
CCTCGGGTGGTTTCGTTTGGGCCTGCAAAAACTACGATGGCGACGTCCAATCCGACATTCTCGCTCAGGGTTTCG
GTTCCCTCGGTATGATGACTTCAGAACTCTTGACACCCGACGGTCAAATCATCGAATCCGAAGCTGCTCATGGAA
CAGTTACAAGGCATTATCGGGAATGGCAAAAGGGTAATGAGACGTCGACTAATCCTGTTGCATCCATTTTTGCTT
GGACGAGAGGGTTGTTGCATAGGGCGAAGCTTGATAAGAATGAGCCTTTGAAACAGTTTTGTTTGGACTTGGAGA
GCGCTTGTGTTGAGGTTATTGATAAGGATGGTGTGATGACCAAGGATCTTGCGATTGCGATTCATGGAGTCAAGA
ATGTGAAGAGGGAACACTGGGTTATCACGGATGCCTACCTGGACGCCGTCAATGTAAGTGACTCAGTTCTTACAA
TCTGTGATCCTTGCTGATGATTTCTGGTTTAGGCCAAGCTGCGGAGGAAGCTCTCAGATCGCGGTTTAGGGACCA
AGCTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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