Fungal Genomics

General Properties

Protein ID	AgabiH97|116240
Gene name
Location	scaffold_9:674656..675025
Strand	+
Gene length (bp)	369
Transcript length (bp)	201
Coding sequence length (bp)	201
Protein length (aa)	67

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Extracellular	Signal peptide	0.0571	0.0568	0.9644	0.0402	0.0283	0.0036	0.0524	0.0537	0.0696	0.0014

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 20	0.999734

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	508.06	229.72	786.40
Initials	Initials knots	58.55	14.16	102.94
Pileal_Stipeal_center	Stage I stipe center	9.02	0.00	21.00
Pileal_Stipeal_shell	Stage I stipe shell	4.72	0.00	13.28
DIF_stipe_center	Stage II stipe center	7.85	0.00	18.05
DIF_stipe_shell	Stage II stipe shell	7.87	0.00	18.62
DIF_stipe_skin	Stage II stipe skin	8.24	0.00	19.73
DIF_cap_skin	Stage II cap skin	8.46	0.00	20.60
DIF_cap_tissue	Stage II cap tissue	9.09	0.00	21.28
DIF_gill_tissue	Stage II gill tissue	7.29	0.00	17.91
YFB_stipe_center	Young fruiting body stipe center	15.18	0.00	31.69
YFB_stipe_shell	Young fruiting body stipe shell	11.83	0.00	26.02
YFB_stipe_skin	Young fruiting body stipe skin	13.48	0.00	28.95
YFB_cap_skin	Young fruiting body cap skin	12.02	0.00	26.73
YFB_cap_tissue	Young fruiting body cap tissue	12.77	0.00	27.88
YFB_gill_tissue	Young fruiting body gill tissue	6.81	0.00	17.09
YFB_veil	Young fruiting body veil	4.32	0.00	12.78

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.020790	yes
Casing	YFB_stipe_center	0.000613	yes
Casing	YFB_stipe_shell	0.005302	yes
Casing	YFB_stipe_skin	0.001625	yes
Casing	YFB_cap_skin	0.002951	yes
Casing	YFB_cap_tissue	0.002084	yes
Casing	YFB_gill_tissue	0.041164	yes
Casing	YFB_veil	0.158500	no
Casing	Initials	0.000613	yes
Casing	Pileal_Stipeal_center	0.007092	yes
Casing	Pileal_Stipeal_shell	0.094821	no
Casing	DIF_stipe_center	0.010093	yes
Casing	DIF_stipe_shell	0.024698	yes
Casing	DIF_stipe_skin	0.008457	yes
Casing	DIF_cap_skin	0.011968	yes
Casing	DIF_cap_tissue	0.005671	yes
DIF_gill_tissue	YFB_stipe_center	0.508897	no
DIF_gill_tissue	YFB_stipe_shell	0.729978	no
DIF_gill_tissue	YFB_stipe_skin	0.608712	no
DIF_gill_tissue	YFB_cap_skin	0.721630	no
DIF_gill_tissue	YFB_cap_tissue	0.665296	no
DIF_gill_tissue	YFB_gill_tissue	0.967573	no
DIF_gill_tissue	YFB_veil	0.769973	no
YFB_stipe_center	YFB_stipe_shell	0.862568	no
YFB_stipe_center	YFB_stipe_skin	0.934722	no
YFB_stipe_center	YFB_cap_skin	0.870089	no
YFB_stipe_center	YFB_cap_tissue	0.907101	no
YFB_stipe_center	YFB_gill_tissue	0.509225	no
YFB_stipe_center	YFB_veil	0.354472	no
YFB_stipe_shell	YFB_stipe_skin	0.935328	no
YFB_stipe_shell	YFB_cap_skin	0.977466	no
YFB_stipe_shell	YFB_cap_tissue	0.966718	no
YFB_stipe_shell	YFB_gill_tissue	0.708942	no
YFB_stipe_shell	YFB_veil	0.499974	no
YFB_stipe_skin	YFB_cap_skin	0.943318	no
YFB_stipe_skin	YFB_cap_tissue	0.975107	no
YFB_stipe_skin	YFB_gill_tissue	0.615838	no
YFB_stipe_skin	YFB_veil	0.399284	no
YFB_cap_skin	YFB_cap_tissue	0.975242	no
YFB_cap_skin	YFB_gill_tissue	0.686936	no
YFB_cap_skin	YFB_veil	0.489780	no
YFB_cap_tissue	YFB_gill_tissue	0.647770	no
YFB_cap_tissue	YFB_veil	0.480337	no
YFB_gill_tissue	YFB_veil	0.826161	no
Initials	DIF_gill_tissue	0.043772	yes
Initials	YFB_stipe_center	0.050499	no
Initials	YFB_stipe_shell	0.064141	no
Initials	YFB_stipe_skin	0.047163	yes
Initials	YFB_cap_skin	0.060104	no
Initials	YFB_cap_tissue	0.065833	no
Initials	YFB_gill_tissue	0.072685	no
Initials	YFB_veil	0.159049	no
Initials	Pileal_Stipeal_center	0.044631	yes
Initials	Pileal_Stipeal_shell	0.102350	no
Initials	DIF_stipe_center	0.045911	yes
Initials	DIF_stipe_shell	0.067706	no
Initials	DIF_stipe_skin	0.043121	yes
Initials	DIF_cap_skin	0.054375	no
Initials	DIF_cap_tissue	0.046745	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.906765	no
Pileal_Stipeal_center	YFB_stipe_center	0.660549	no
Pileal_Stipeal_center	YFB_stipe_shell	0.861912	no
Pileal_Stipeal_center	YFB_stipe_skin	0.772059	no
Pileal_Stipeal_center	YFB_cap_skin	0.841337	no
Pileal_Stipeal_center	YFB_cap_tissue	0.810956	no
Pileal_Stipeal_center	YFB_gill_tissue	0.881815	no
Pileal_Stipeal_center	YFB_veil	0.630458	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.692242	no
Pileal_Stipeal_center	DIF_stipe_center	0.939527	no
Pileal_Stipeal_center	DIF_stipe_shell	0.942519	no
Pileal_Stipeal_center	DIF_stipe_skin	0.966429	no
Pileal_Stipeal_center	DIF_cap_skin	0.974793	no
Pileal_Stipeal_center	DIF_cap_tissue	0.973927	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.805181	no
Pileal_Stipeal_shell	YFB_stipe_center	0.341679	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.491686	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.414636	no
Pileal_Stipeal_shell	YFB_cap_skin	0.489311	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.453914	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.856524	no
Pileal_Stipeal_shell	YFB_veil	0.960307	no
Pileal_Stipeal_shell	DIF_stipe_center	0.776268	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.765703	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.742323	no
Pileal_Stipeal_shell	DIF_cap_skin	0.726547	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.687885	no
DIF_stipe_center	DIF_gill_tissue	0.968759	no
DIF_stipe_center	YFB_stipe_center	0.568271	no
DIF_stipe_center	YFB_stipe_shell	0.761216	no
DIF_stipe_center	YFB_stipe_skin	0.654695	no
DIF_stipe_center	YFB_cap_skin	0.760695	no
DIF_stipe_center	YFB_cap_tissue	0.716007	no
DIF_stipe_center	YFB_gill_tissue	0.944241	no
DIF_stipe_center	YFB_veil	0.736440	no
DIF_stipe_center	DIF_stipe_shell	0.971198	no
DIF_stipe_center	DIF_stipe_skin	0.971350	no
DIF_stipe_center	DIF_cap_skin	0.971185	no
DIF_stipe_center	DIF_cap_tissue	0.937093	no
DIF_stipe_shell	DIF_gill_tissue	0.968565	no
DIF_stipe_shell	YFB_stipe_center	0.590871	no
DIF_stipe_shell	YFB_stipe_shell	0.774103	no
DIF_stipe_shell	YFB_stipe_skin	0.681292	no
DIF_stipe_shell	YFB_cap_skin	0.773657	no
DIF_stipe_shell	YFB_cap_tissue	0.739626	no
DIF_stipe_shell	YFB_gill_tissue	0.946800	no
DIF_stipe_shell	YFB_veil	0.750632	no
DIF_stipe_shell	DIF_stipe_skin	0.971382	no
DIF_stipe_shell	DIF_cap_skin	0.972375	no
DIF_stipe_shell	DIF_cap_tissue	0.940297	no
DIF_stipe_skin	DIF_gill_tissue	0.950627	no
DIF_stipe_skin	YFB_stipe_center	0.595376	no
DIF_stipe_skin	YFB_stipe_shell	0.802963	no
DIF_stipe_skin	YFB_stipe_skin	0.693959	no
DIF_stipe_skin	YFB_cap_skin	0.793229	no
DIF_stipe_skin	YFB_cap_tissue	0.753004	no
DIF_stipe_skin	YFB_gill_tissue	0.915815	no
DIF_stipe_skin	YFB_veil	0.722261	no
DIF_stipe_skin	DIF_cap_skin	0.972633	no
DIF_stipe_skin	DIF_cap_tissue	0.961292	no
DIF_cap_skin	DIF_gill_tissue	0.940333	no
DIF_cap_skin	YFB_stipe_center	0.628194	no
DIF_cap_skin	YFB_stipe_shell	0.830994	no
DIF_cap_skin	YFB_stipe_skin	0.722590	no
DIF_cap_skin	YFB_cap_skin	0.818295	no
DIF_cap_skin	YFB_cap_tissue	0.762045	no
DIF_cap_skin	YFB_gill_tissue	0.914788	no
DIF_cap_skin	YFB_veil	0.725954	no
DIF_cap_skin	DIF_cap_tissue	0.971815	no
DIF_cap_tissue	DIF_gill_tissue	0.904535	no
DIF_cap_tissue	YFB_stipe_center	0.654742	no
DIF_cap_tissue	YFB_stipe_shell	0.860488	no
DIF_cap_tissue	YFB_stipe_skin	0.770030	no
DIF_cap_tissue	YFB_cap_skin	0.858347	no
DIF_cap_tissue	YFB_cap_tissue	0.807638	no
DIF_cap_tissue	YFB_gill_tissue	0.856681	no
DIF_cap_tissue	YFB_veil	0.626833	no

Orthologs

Orthofinder run ID	1
Orthogroup	9648
Change Orthofinder run	1: Agaricomycetes 5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|116120
Agaricus bisporus var bisporus H39	AgabiH39|462000
Agaricus bisporus var bisporus H97	AgabiH97|116120
Agaricus bisporus var bisporus H97	AgabiH97|116240 (this protein)

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|116240 MQPTQLFFALVALCATAVMAGPAPAGAVEARGFICDFLPQPAADDACSTVCKQEGNGMGGHCVDAL*
Coding	>AgabiH97|116240 ATGCAACCTACCCAACTCTTCTTCGCTCTCGTCGCTCTCTGCGCCACAGCCGTCATGGCTGGACCTGCCCCCGCT GGTGCAGTTGAAGCTCGTGGCTTCATCTGTGACTTCCTTCCTCAACCTGCTGCCGATGACGCGTGCAGCACCGTC TGCAAGCAGGAAGGCAATGGCATGGGTGGCCACTGTGTCGACGCATTGTAA
Transcript	>AgabiH97|116240 ATGCAACCTACCCAACTCTTCTTCGCTCTCGTCGCTCTCTGCGCCACAGCCGTCATGGCTGGACCTGCCCCCGCT GGTGCAGTTGAAGCTCGTGGCTTCATCTGTGACTTCCTTCCTCAACCTGCTGCCGATGACGCGTGCAGCACCGTC TGCAAGCAGGAAGGCAATGGCATGGGTGGCCACTGTGTCGACGCATTGTAA
Gene	>AgabiH97|116240 ATGCAACCTACCCAACTCTTCTTCGCTCTCGTCGCTCTCTGCGCCACAGCCGTCATGGCTGGACCTGCCCCCGCT GGTGCAGTTGAAGCTCGTGGCTTCATCTGTGACTTCCTTCCTCAACCTGCTGCCGATGACGCGTGCAGCACCGTC TGCAAGCAGGAAGGCAATGGCATGGGTGGCCACTGTGTCGGTGAGTACATAAACATGTAGCGTAGACGATTGATA TTTACCGAGAGGTTGACAGACGGTACCTGCACCTGCTTGCACTAATTGTGAGATCAAATCGATCTCCATACGTTG AGCATGTAAGTTTTCATTTTCATGATGAAAAGACTACGACTTATTGTATACGTGATGATTACAGTGTAA