Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|115720
Gene name
Locationscaffold_9:541357..543736
Strand-
Gene length (bp)2379
Transcript length (bp)2262
Coding sequence length (bp)2262
Protein length (aa) 754

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13923 zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.2E-08 217 247
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 9.8E-07 217 248
PF13445 zf-RING_UBOX RING-type zinc-finger 6.3E-06 217 245

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSH1 PE=1 SV=1 208 443 2.0E-06

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|115720
MPARNATPGPSTLSQQPDILQPHISKKRGVSDHTADEGPRSKKHRKDLEVTDIDDKSAVVNLSGSRDNKKKRRKK
KKKSPLTVPEIDQDRIILHTGSKAPASSSLASSTTLSRASASPPVLAAPLAIVSSHSEPLTAVGEESDNPPFSLI
NKGKGRAVSEGPDNTSSHSVVGSPQERDTMKAAQAKIAELTAQLESQKQRLTRHEDNLSHLQQSLTCEICLDLLY
KPYALNPCGHVVCYMCLVRWFTNIQGGATNPNVEPPTTQEDVHRLLTGQPATRGVFLRNRKTCPLCRAAMVERPV
EIWSIKSMVANLVKSKLADLPSSPPPSATETPGARSKQSTSHNDPWRNIFRKSRVRAIDEPFRPPVQFYPPPPEH
HEGEGGEAWGMQDMGMYDAEDGGIYRCLDCMHEIWGGLCTHCQREYAGHARFDRDDDEDDEDVGEEGENFLGRRL
RQIRAHNGPWGWEIEAVDDHEDDDDDIDADEYFGWGPAPYWRDMGLSDDESLSGDDLDEGESSEGEWSGDEEDHE
RALFEALREAREEGGIAHIEPVEEEEAHEHEPYHSDSASGTDSDVHERPDSDDEEEYEDSFIDDEEEDGVNDHNR
RTRQRRSREHSVINPVDSEDEPEGGHTVLDVLDQEDTDEESLDARAVARRIGRGMRLGGGGVEYGMDMGSPFRGL
RGHSIVDDSDDDEEDGYGTDMDSPFQGQRGRHNYGRRMYEGDDDDDDDEDEEEEVQPRRYRAGLRHQPPLEFSSD
SDY*
Coding >AgabiH97|115720
ATGCCTGCCCGCAACGCGACACCAGGCCCAAGTACATTATCGCAACAACCAGATATCCTTCAGCCCCATATCTCG
AAAAAACGCGGAGTCTCTGACCACACAGCTGACGAAGGGCCACGATCCAAGAAACACCGGAAAGATCTCGAAGTT
ACCGATATTGACGACAAATCTGCTGTTGTAAATTTGAGCGGTTCTAGGGATAATAAGAAGAAACGCAGGAAGAAG
AAGAAAAAGTCACCTCTCACTGTTCCTGAGATCGATCAAGACCGAATAATTCTCCACACTGGATCGAAAGCACCG
GCGTCATCATCTTTAGCGTCCTCGACTACTCTTTCGCGTGCCTCAGCTTCCCCTCCTGTTCTCGCTGCTCCACTA
GCCATCGTCAGTAGTCACTCCGAGCCTCTAACCGCCGTTGGAGAGGAGAGCGATAACCCGCCGTTTAGTCTCATC
AACAAAGGCAAAGGCCGAGCCGTCTCAGAGGGCCCAGATAATACATCCTCACATTCAGTTGTTGGATCACCACAA
GAACGTGATACAATGAAGGCCGCTCAAGCTAAAATTGCGGAGCTCACAGCCCAGCTCGAATCGCAAAAGCAAAGA
TTAACCCGACACGAAGATAATCTGTCACACTTACAACAATCCCTTACATGCGAAATTTGCTTGGATCTCCTATAC
AAACCTTACGCACTCAATCCTTGTGGTCATGTCGTGTGCTACATGTGCCTCGTTCGCTGGTTCACCAATATTCAA
GGCGGTGCTACCAATCCCAATGTTGAACCCCCGACCACACAAGAGGATGTACATCGTCTCCTTACCGGCCAACCC
GCAACCCGTGGTGTATTTTTACGGAATCGCAAAACCTGTCCTCTTTGCCGTGCCGCAATGGTCGAACGACCGGTA
GAAATTTGGTCTATCAAAAGCATGGTTGCCAACCTTGTCAAAAGCAAACTTGCGGACCTCCCCTCCTCACCGCCA
CCTTCTGCCACTGAAACCCCCGGCGCCAGATCAAAGCAAAGCACATCTCACAATGATCCTTGGCGTAATATCTTC
CGTAAATCGAGGGTTCGTGCGATCGATGAACCTTTCCGTCCGCCAGTTCAGTTTTATCCACCACCGCCCGAACAT
CATGAAGGAGAGGGAGGTGAGGCGTGGGGTATGCAGGATATGGGAATGTATGACGCCGAAGATGGTGGGATTTAT
AGATGCTTGGATTGTATGCATGAGATATGGGGTGGATTGTGTACGCACTGTCAAAGAGAGTATGCCGGACATGCT
AGATTTGATCGGGACGATGACGAAGATGACGAAGATGTTGGCGAAGAAGGGGAGAACTTCCTTGGGAGGCGGTTG
AGACAGATTCGGGCTCACAATGGTCCGTGGGGTTGGGAGATAGAAGCGGTGGATGATCATGAAGATGATGACGAC
GACATTGATGCTGATGAGTACTTTGGTTGGGGACCTGCGCCTTACTGGCGTGACATGGGTTTGTCGGATGATGAG
AGTTTATCAGGCGATGATTTAGATGAAGGCGAGTCGAGTGAGGGAGAGTGGAGTGGTGATGAGGAGGATCATGAA
CGTGCTCTCTTTGAAGCATTGCGTGAAGCTCGAGAGGAAGGAGGTATCGCACATATTGAACCTGTGGAAGAGGAG
GAGGCGCATGAACATGAACCCTATCACTCTGACTCTGCTTCGGGCACCGACTCGGATGTACACGAACGTCCAGAT
TCTGACGACGAGGAAGAATATGAAGATAGTTTCATAGATGACGAGGAAGAGGACGGTGTTAACGACCACAATCGT
AGAACACGACAACGTCGAAGCAGAGAGCATAGTGTGATTAATCCAGTTGACTCTGAAGATGAACCAGAAGGTGGA
CACACTGTGCTTGATGTGCTTGATCAGGAAGACACTGATGAGGAGTCGTTGGACGCTAGGGCAGTAGCTCGACGG
ATAGGGAGGGGTATGCGTCTAGGTGGTGGGGGAGTGGAGTACGGCATGGATATGGGTTCACCTTTTCGCGGACTG
AGAGGGCATTCTATCGTTGATGATTCTGACGATGATGAGGAAGACGGTTATGGCACGGATATGGATTCACCTTTT
CAGGGGCAGAGAGGGCGTCATAATTATGGACGTCGCATGTACGAGGGTGATGATGATGATGACGACGACGAAGAC
GAGGAAGAGGAGGTTCAGCCAAGAAGGTATAGGGCTGGATTGAGGCACCAACCCCCTTTAGAGTTCAGCTCTGAT
AGTGACTATTGA
Transcript >AgabiH97|115720
ATGCCTGCCCGCAACGCGACACCAGGCCCAAGTACATTATCGCAACAACCAGATATCCTTCAGCCCCATATCTCG
AAAAAACGCGGAGTCTCTGACCACACAGCTGACGAAGGGCCACGATCCAAGAAACACCGGAAAGATCTCGAAGTT
ACCGATATTGACGACAAATCTGCTGTTGTAAATTTGAGCGGTTCTAGGGATAATAAGAAGAAACGCAGGAAGAAG
AAGAAAAAGTCACCTCTCACTGTTCCTGAGATCGATCAAGACCGAATAATTCTCCACACTGGATCGAAAGCACCG
GCGTCATCATCTTTAGCGTCCTCGACTACTCTTTCGCGTGCCTCAGCTTCCCCTCCTGTTCTCGCTGCTCCACTA
GCCATCGTCAGTAGTCACTCCGAGCCTCTAACCGCCGTTGGAGAGGAGAGCGATAACCCGCCGTTTAGTCTCATC
AACAAAGGCAAAGGCCGAGCCGTCTCAGAGGGCCCAGATAATACATCCTCACATTCAGTTGTTGGATCACCACAA
GAACGTGATACAATGAAGGCCGCTCAAGCTAAAATTGCGGAGCTCACAGCCCAGCTCGAATCGCAAAAGCAAAGA
TTAACCCGACACGAAGATAATCTGTCACACTTACAACAATCCCTTACATGCGAAATTTGCTTGGATCTCCTATAC
AAACCTTACGCACTCAATCCTTGTGGTCATGTCGTGTGCTACATGTGCCTCGTTCGCTGGTTCACCAATATTCAA
GGCGGTGCTACCAATCCCAATGTTGAACCCCCGACCACACAAGAGGATGTACATCGTCTCCTTACCGGCCAACCC
GCAACCCGTGGTGTATTTTTACGGAATCGCAAAACCTGTCCTCTTTGCCGTGCCGCAATGGTCGAACGACCGGTA
GAAATTTGGTCTATCAAAAGCATGGTTGCCAACCTTGTCAAAAGCAAACTTGCGGACCTCCCCTCCTCACCGCCA
CCTTCTGCCACTGAAACCCCCGGCGCCAGATCAAAGCAAAGCACATCTCACAATGATCCTTGGCGTAATATCTTC
CGTAAATCGAGGGTTCGTGCGATCGATGAACCTTTCCGTCCGCCAGTTCAGTTTTATCCACCACCGCCCGAACAT
CATGAAGGAGAGGGAGGTGAGGCGTGGGGTATGCAGGATATGGGAATGTATGACGCCGAAGATGGTGGGATTTAT
AGATGCTTGGATTGTATGCATGAGATATGGGGTGGATTGTGTACGCACTGTCAAAGAGAGTATGCCGGACATGCT
AGATTTGATCGGGACGATGACGAAGATGACGAAGATGTTGGCGAAGAAGGGGAGAACTTCCTTGGGAGGCGGTTG
AGACAGATTCGGGCTCACAATGGTCCGTGGGGTTGGGAGATAGAAGCGGTGGATGATCATGAAGATGATGACGAC
GACATTGATGCTGATGAGTACTTTGGTTGGGGACCTGCGCCTTACTGGCGTGACATGGGTTTGTCGGATGATGAG
AGTTTATCAGGCGATGATTTAGATGAAGGCGAGTCGAGTGAGGGAGAGTGGAGTGGTGATGAGGAGGATCATGAA
CGTGCTCTCTTTGAAGCATTGCGTGAAGCTCGAGAGGAAGGAGGTATCGCACATATTGAACCTGTGGAAGAGGAG
GAGGCGCATGAACATGAACCCTATCACTCTGACTCTGCTTCGGGCACCGACTCGGATGTACACGAACGTCCAGAT
TCTGACGACGAGGAAGAATATGAAGATAGTTTCATAGATGACGAGGAAGAGGACGGTGTTAACGACCACAATCGT
AGAACACGACAACGTCGAAGCAGAGAGCATAGTGTGATTAATCCAGTTGACTCTGAAGATGAACCAGAAGGTGGA
CACACTGTGCTTGATGTGCTTGATCAGGAAGACACTGATGAGGAGTCGTTGGACGCTAGGGCAGTAGCTCGACGG
ATAGGGAGGGGTATGCGTCTAGGTGGTGGGGGAGTGGAGTACGGCATGGATATGGGTTCACCTTTTCGCGGACTG
AGAGGGCATTCTATCGTTGATGATTCTGACGATGATGAGGAAGACGGTTATGGCACGGATATGGATTCACCTTTT
CAGGGGCAGAGAGGGCGTCATAATTATGGACGTCGCATGTACGAGGGTGATGATGATGATGACGACGACGAAGAC
GAGGAAGAGGAGGTTCAGCCAAGAAGGTATAGGGCTGGATTGAGGCACCAACCCCCTTTAGAGTTCAGCTCTGAT
AGTGACTATTGA
Gene >AgabiH97|115720
ATGCCTGCCCGCAACGCGACACCAGGCCCAAGTACATTATCGCAACAACCAGATATCCTTCAGCCCCATATCTCG
AAAAAACGCGGAGTCTCTGACCACACAGCTGACGAAGGGCCACGATCCAAGAAACACCGGAAAGATCTCGAAGTT
ACCGATATTGACGACAAATCTGCTGTTGTAAATTTGAGCGGTTCTAGGGATAATAAGAAGAAACGCAGGAAGAAG
AAGAAAAAGTCACCTCTCACTGTTCCTGAGATCGATCAAGACCGAATAATTCTCCACACTGGATCGAAAGCACCG
GCGTCATCATCTTTAGCGTCCTCGACTACTCTTTCGCGTGCCTCAGCTTCCCCTCCTGTTCTCGCTGCTCCACTA
GCCATCGTCAGTAGTCACTCCGAGCCTCTAACCGCCGTTGGAGAGGAGAGCGATAACCCGCCGTTTAGTGTGAGT
ATCTTGGGCGTTGTTATTCATGACTCGTGCTTACGTTGGCGGTACTGGCGGATAGCTCATCAACAAAGGCAAAGG
CCGAGCCGTCTCAGAGGGCCCAGATAATACATCCTCACATTCAGTTGTTGGATCACCACAAGAACGTGATACAAT
GAAGGCCGCTCAAGCTAAAATTGCGGAGCTCACAGCCCAGCTCGAATCGCAAAAGCAAGTCAGTAGACCTAAATT
TATATCCTTTGGCATAATCTTGACGAGTTATATTTCCAGAGATTAACCCGACACGAAGATAATCTGTCACACTTA
CAACAATCCCTTACATGCGAAATTTGCTTGGATCTCCTATACAAACCTTACGCACTCAATCCTTGTGGTCATGTC
GTGTGCTACATGTGCCTCGTTCGCTGGTTCACCAATATTCAAGGCGGTGCTACCAATCCCAATGTTGAACCCCCG
ACCACACAAGAGGATGTACATCGTCTCCTTACCGGCCAACCCGCAACCCGTGGTGTATTTTTACGGAATCGCAAA
ACCTGTCCTCTTTGCCGTGCCGCAATGGTCGAACGACCGGTAGAAATTTGGTCTATCAAAAGCATGGTTGCCAAC
CTTGTCAAAAGCAAACTTGCGGACCTCCCCTCCTCACCGCCACCTTCTGCCACTGAAACCCCCGGCGCCAGATCA
AAGCAAAGCACATCTCACAATGATCCTTGGCGTAATATCTTCCGTAAATCGAGGGTTCGTGCGATCGATGAACCT
TTCCGTCCGCCAGTTCAGTTTTATCCACCACCGCCCGAACATCATGAAGGAGAGGGAGGTGAGGCGTGGGGTATG
CAGGATATGGGAATGTATGACGCCGAAGATGGTGGGATTTATAGATGCTTGGATTGTATGCATGAGATATGGGGT
GGATTGTGTACGCACTGTCAAAGAGAGTATGCCGGACATGCTAGATTTGATCGGGACGATGACGAAGATGACGAA
GATGTTGGCGAAGAAGGGGAGAACTTCCTTGGGAGGCGGTTGAGACAGATTCGGGCTCACAATGGTCCGTGGGGT
TGGGAGATAGAAGCGGTGGATGATCATGAAGATGATGACGACGACATTGATGCTGATGAGTACTTTGGTTGGGGA
CCTGCGCCTTACTGGCGTGACATGGGTTTGTCGGATGATGAGAGTTTATCAGGCGATGATTTAGATGAAGGCGAG
TCGAGTGAGGGAGAGTGGAGTGGTGATGAGGAGGATCATGAACGTGCTCTCTTTGAAGCATTGCGTGAAGCTCGA
GAGGAAGGAGGTATCGCACATATTGAACCTGTGGAAGAGGAGGAGGCGCATGAACATGAACCCTATCACTCTGAC
TCTGCTTCGGGCACCGACTCGGATGTACACGAACGTCCAGATTCTGACGACGAGGAAGAATATGAAGATAGTTTC
ATAGATGACGAGGAAGAGGACGGTGTTAACGACCACAATCGTAGAACACGACAACGTCGAAGCAGAGAGCATAGT
GTGATTAATCCAGTTGACTCTGAAGATGAACCAGAAGGTGGACACACTGTGCTTGATGTGCTTGATCAGGAAGAC
ACTGATGAGGAGTCGTTGGACGCTAGGGCAGTAGCTCGACGGATAGGGAGGGGTATGCGTCTAGGTGGTGGGGGA
GTGGAGTACGGCATGGATATGGGTTCACCTTTTCGCGGACTGAGAGGGCATTCTATCGTTGATGATTCTGACGAT
GATGAGGAAGACGGTTATGGCACGGATATGGATTCACCTTTTCAGGGGCAGAGAGGGCGTCATAATTATGGACGT
CGCATGTACGAGGGTGATGATGATGATGACGACGACGAAGACGAGGAAGAGGAGGTTCAGCCAAGAAGGTATAGG
GCTGGATTGAGGCACCAACCCCCTTTAGAGTTCAGCTCTGATAGTGACTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail