Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|115630
Gene name
Location	scaffold_9:518961..520593
Strand	+
Gene length (bp)	1632
Transcript length (bp)	1251
Coding sequence length (bp)	1251
Protein length (aa)	417

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05179	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	2.7E-55	237	405

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUE7\|CDC73_SCHPO	Cell division control protein 73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc73 PE=3 SV=1	1	411	6.0E-48
sp\|Q06697\|CDC73_YEAST	Cell division control protein 73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC73 PE=1 SV=1	2	408	1.0E-29
sp\|Q5ZLM0\|CDC73_CHICK	Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1	199	413	9.0E-25
sp\|Q8JZM7\|CDC73_MOUSE	Parafibromin OS=Mus musculus GN=Cdc73 PE=1 SV=1	199	413	1.0E-24
sp\|Q6P1J9\|CDC73_HUMAN	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	199	413	1.0E-24

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUE7\|CDC73_SCHPO	Cell division control protein 73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc73 PE=3 SV=1	1	411	6.0E-48
sp\|Q06697\|CDC73_YEAST	Cell division control protein 73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC73 PE=1 SV=1	2	408	1.0E-29
sp\|Q5ZLM0\|CDC73_CHICK	Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1	199	413	9.0E-25
sp\|Q8JZM7\|CDC73_MOUSE	Parafibromin OS=Mus musculus GN=Cdc73 PE=1 SV=1	199	413	1.0E-24
sp\|Q6P1J9\|CDC73_HUMAN	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	199	413	1.0E-24
sp\|Q4V8C8\|CDC73_RAT	Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1	199	413	1.0E-24
sp\|Q9N5U5\|CDC73_CAEEL	Cell division cycle protein 73 OS=Caenorhabditis elegans GN=cdc-73 PE=3 SV=4	240	413	2.0E-24
sp\|Q9LJ87\|CDC73_ARATH	Protein CDC73 homolog OS=Arabidopsis thaliana GN=CDC73 PE=1 SV=1	41	408	1.0E-18

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 21	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|115630 MDTLSGLRQAISSKTPVAFANDQGPCTALAAATHIVLPTGSVPKSTPTRYRKPGTSGSSPQDFYTTEALYLAWHL RDAAATEYMKQTRENGLTVGFVSVTERKKVVDVLEGRIPDHDDAIPAAEVESTTPPGSPPRDLRSRSATAPKSSA AEPTSSPTKRRYAPDYHDAEVVKKIKLSEVELRDRNTVLRGNKPNNFATVRTIFADKLKKLRDAARSGATQPVAT PDPKLQAKKARNFQPIIIISSSPTALITMYNVKRFLQESTFEPPQEARAHAMAEGNTRPEDLIAIYRRRTHIDSS GKETESQAKYFVVDSVEALAKFGADAWDRVVCVMTTGQAWQFRPYKWNEPRQLFHHVKGIYVTWSNDPPNPKIQD WNVTELKIDPHRRHVDKAVVAQFWKILDAWIVSNKPWLMKA*
Coding	>AgabiH97\|115630 ATGGATACTCTCAGTGGCCTCCGGCAGGCAATATCCTCAAAAACACCCGTCGCCTTTGCAAACGATCAAGGCCCA TGTACCGCTCTCGCTGCTGCAACCCACATCGTTCTCCCCACCGGTAGTGTGCCAAAGTCAACTCCAACCCGCTAC CGCAAACCCGGGACGTCGGGATCTTCACCGCAGGATTTCTATACCACCGAAGCTTTATACCTTGCATGGCATTTG CGTGATGCTGCTGCTACGGAATATATGAAACAGACTCGAGAGAATGGTCTTACGGTTGGCTTTGTCAGTGTCACC GAGAGGAAAAAGGTAGTGGATGTGCTGGAGGGTCGGATACCTGACCATGATGATGCAATACCTGCAGCTGAAGTT GAGTCGACGACACCACCGGGCTCACCTCCACGAGATCTTCGTTCACGGTCGGCTACTGCTCCTAAGTCATCAGCT GCAGAACCTACTTCATCTCCTACAAAACGACGATACGCTCCCGATTATCATGACGCCGAAGTGGTCAAGAAAATC AAGCTCAGTGAAGTAGAGCTGAGGGACCGAAATACAGTTCTGCGTGGTAACAAACCAAACAACTTTGCTACTGTA CGAACTATTTTTGCAGATAAACTGAAAAAGCTTAGAGATGCTGCTCGTTCTGGAGCTACTCAGCCTGTTGCGACG CCAGACCCTAAACTTCAAGCAAAGAAAGCGCGCAATTTCCAACCCATCATCATCATATCATCCTCTCCAACCGCT CTTATCACCATGTACAACGTCAAACGCTTTCTCCAAGAATCTACCTTTGAACCACCGCAAGAAGCCCGAGCACAC GCTATGGCAGAAGGCAACACTCGACCCGAAGATCTCATTGCAATTTACCGTCGCCGCACCCACATCGACTCAAGT GGAAAAGAAACCGAATCTCAAGCAAAATATTTCGTTGTCGATAGCGTTGAAGCTTTAGCCAAATTTGGTGCTGAT GCTTGGGATAGAGTGGTTTGTGTTATGACTACGGGTCAAGCTTGGCAGTTTCGACCGTACAAGTGGAATGAACCG AGACAGTTATTCCATCATGTCAAGGGGATTTATGTGACATGGTCAAATGATCCTCCGAACCCCAAAATACAAGAC TGGAACGTAACAGAGTTAAAGATCGACCCGCATCGACGACACGTTGATAAAGCTGTCGTCGCTCAATTTTGGAAA ATTCTCGACGCTTGGATTGTGTCGAATAAACCATGGTTAATGAAAGCTTAA
Transcript	>AgabiH97\|115630 ATGGATACTCTCAGTGGCCTCCGGCAGGCAATATCCTCAAAAACACCCGTCGCCTTTGCAAACGATCAAGGCCCA TGTACCGCTCTCGCTGCTGCAACCCACATCGTTCTCCCCACCGGTAGTGTGCCAAAGTCAACTCCAACCCGCTAC CGCAAACCCGGGACGTCGGGATCTTCACCGCAGGATTTCTATACCACCGAAGCTTTATACCTTGCATGGCATTTG CGTGATGCTGCTGCTACGGAATATATGAAACAGACTCGAGAGAATGGTCTTACGGTTGGCTTTGTCAGTGTCACC GAGAGGAAAAAGGTAGTGGATGTGCTGGAGGGTCGGATACCTGACCATGATGATGCAATACCTGCAGCTGAAGTT GAGTCGACGACACCACCGGGCTCACCTCCACGAGATCTTCGTTCACGGTCGGCTACTGCTCCTAAGTCATCAGCT GCAGAACCTACTTCATCTCCTACAAAACGACGATACGCTCCCGATTATCATGACGCCGAAGTGGTCAAGAAAATC AAGCTCAGTGAAGTAGAGCTGAGGGACCGAAATACAGTTCTGCGTGGTAACAAACCAAACAACTTTGCTACTGTA CGAACTATTTTTGCAGATAAACTGAAAAAGCTTAGAGATGCTGCTCGTTCTGGAGCTACTCAGCCTGTTGCGACG CCAGACCCTAAACTTCAAGCAAAGAAAGCGCGCAATTTCCAACCCATCATCATCATATCATCCTCTCCAACCGCT CTTATCACCATGTACAACGTCAAACGCTTTCTCCAAGAATCTACCTTTGAACCACCGCAAGAAGCCCGAGCACAC GCTATGGCAGAAGGCAACACTCGACCCGAAGATCTCATTGCAATTTACCGTCGCCGCACCCACATCGACTCAAGT GGAAAAGAAACCGAATCTCAAGCAAAATATTTCGTTGTCGATAGCGTTGAAGCTTTAGCCAAATTTGGTGCTGAT GCTTGGGATAGAGTGGTTTGTGTTATGACTACGGGTCAAGCTTGGCAGTTTCGACCGTACAAGTGGAATGAACCG AGACAGTTATTCCATCATGTCAAGGGGATTTATGTGACATGGTCAAATGATCCTCCGAACCCCAAAATACAAGAC TGGAACGTAACAGAGTTAAAGATCGACCCGCATCGACGACACGTTGATAAAGCTGTCGTCGCTCAATTTTGGAAA ATTCTCGACGCTTGGATTGTGTCGAATAAACCATGGTTAATGAAAGCTTAA
Gene	>AgabiH97\|115630 ATGGATACTCTCAGTGGCCTCCGGCAGGCAATATCCTCAAAAACACCCGTCGCCTTTGCAAACGATCAAGGCCCA TGTACCGCTCTCGCTGCTGCAACCCACATCGTTCTCCCCACCGGTAGTGTGCCAAAGTCAACTCCAACCCGCTAC CGCAAACCCGGGACGTCGGGATCTTCACCGCAGGATTTCTATACCACCGAAGCTTTATACCTTGCATGGCATTTG CGTGATGCTGCTGCTACGGAATATATGAAACAGACTCGAGAGAATGGTCTTACGGTTGGCTTTGTCAGTGTCACC GAGAGGAAAAAGGTAGTGGATGTGCTGGAGGGTCGGATACCTGACCATGATGATGCAATACCTGCAGCTGAAGGT GGGAGCTCATCCTGTTCCTTTTCAGAGCAGCACTTAACTTTGTTTCGGTTAGTTGAGTCGACGACACCACCGGGC TCACCTCCACGAGATCTTCGTTCACGGTCGGCTACTGCTCCTAAGTCATCAGCTGCAGAACCTACTTCATCTCCT ACAAAACGACGATACGCTCCCGATTATCATGACGCCGAAGTGGTCAAGAAAATCAAGCTCAGTGAAGTAGAGCTG AGGGACCGAAATACAGTTCTGCGTGGTAACAAACCAAACGTGCGTTTATTACTCCGCTATGCATCTTTAGCTGAC TGTCCGTCAGAACTTTGCTACTGTACGAACTATTTTTGCAGATAAACTGAAAAAGCTTAGAGATGCTGCTCGTTC TGGAGCTACTCAGCCTGTTGCGACGCCAGGTGTGCAATTCAGATATGATCCTACCCCGTAAATAAAGTTTGCTAA CTTTATGTTTTTATCATTCAGACCCTAAACTTCAAGCAAAGAAAGCGCGTCAGTCTTTCATGTTAGTCTAAACCT TCATCTCCGTTAACGTCTTATAGGCAATTTCCAACCCATCATCATCATATCATCCTCTCCAACCGCTCTTATCAC CATGTACAACGTCAAACGCTTTCTCCAAGAATCTACGTGAGCCTTCAACATATCCAATCTCTACAATCTCTAATA GTTTCAAATAACACAGCTTTGAACCACCGCAAGAAGCCCGAGCACACGCTATGGCAGAAGGCAACACTCGACCCG AAGATCTCATTGCAATTTACCGTCGCCGCACCCACATCGACTCAAGTGGAAAAGAAACCGAATCTCAAGCAAAAT ATTTCGTTGTCGATAGCGTTGAAGCTTTAGCCAAATTTGGTGCTGATGCTTGGGATAGAGTGGTTTGTGTTATGA CTACGGGTCAAGCTTGGCAGTTTCGACCGTACAAGTGGAATGAACCGAGACAGTTATTCCATCATGGTAGGTTTT TGCTGCAACTCGATAATTCATTATGTTGATTATTTTTATCTTGATAGTCAAGGGGATTTATGTGACATGGTCAAA TGATCCTCCGAACCCCAAAATACAAGACTGGAACGTAACAGAGTTAAAGGTATAATGGCTTCCCGGTCATCGTAG ATATTGTGACTCAAATGGCTATTTTAGATCGACCCGCATCGACGACACGTTGATAAAGCTGTCGTCGCTCAATTT TGGAAAATTCTCGACGCTTGGATTGTGTCGAATAAACCATGGTTAATGAAAGCTTAA

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