© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|115340 |
| Gene name | |
| Location | scaffold_9:450163..451268 |
| Strand | - |
| Gene length (bp) | 1105 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01328 | Peroxidase_2 | Peroxidase, family 2 | 1.4E-49 | 49 | 243 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00668|STCC_EMENI | Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2 | 49 | 254 | 3.0E-17 |
| sp|P04963|PRXC_LEPFU | Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3 | 41 | 143 | 4.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004601 | peroxidase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016209 | antioxidant activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 453.68 | 216.92 | 690.44 |
| Initials | Initials knots | 155.46 | 92.97 | 217.96 |
| Pileal_Stipeal_center | Stage I stipe center | 537.34 | 298.89 | 775.79 |
| Pileal_Stipeal_shell | Stage I stipe shell | 673.96 | 366.26 | 981.65 |
| DIF_stipe_center | Stage II stipe center | 635.12 | 347.27 | 922.96 |
| DIF_stipe_shell | Stage II stipe shell | 465.34 | 264.55 | 666.13 |
| DIF_stipe_skin | Stage II stipe skin | 429.54 | 241.71 | 617.37 |
| DIF_cap_skin | Stage II cap skin | 586.56 | 324.98 | 848.14 |
| DIF_cap_tissue | Stage II cap tissue | 632.59 | 347.00 | 918.17 |
| DIF_gill_tissue | Stage II gill tissue | 695.10 | 376.16 | 1014.04 |
| YFB_stipe_center | Young fruiting body stipe center | 499.39 | 282.20 | 716.59 |
| YFB_stipe_shell | Young fruiting body stipe shell | 510.69 | 288.11 | 733.28 |
| YFB_stipe_skin | Young fruiting body stipe skin | 430.86 | 247.16 | 614.56 |
| YFB_cap_skin | Young fruiting body cap skin | 514.84 | 289.43 | 740.25 |
| YFB_cap_tissue | Young fruiting body cap tissue | 435.31 | 247.84 | 622.78 |
| YFB_gill_tissue | Young fruiting body gill tissue | 662.45 | 357.91 | 966.99 |
| YFB_veil | Young fruiting body veil | 848.87 | 445.45 | 1252.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.245540 | no |
| Casing | YFB_stipe_center | 0.862770 | no |
| Casing | YFB_stipe_shell | 0.825118 | no |
| Casing | YFB_stipe_skin | 0.932566 | no |
| Casing | YFB_cap_skin | 0.815815 | no |
| Casing | YFB_cap_tissue | 0.948564 | no |
| Casing | YFB_gill_tissue | 0.333349 | no |
| Casing | YFB_veil | 0.067520 | no |
| Casing | Initials | 0.000613 | yes |
| Casing | Pileal_Stipeal_center | 0.733597 | no |
| Casing | Pileal_Stipeal_shell | 0.294057 | no |
| Casing | DIF_stipe_center | 0.401721 | no |
| Casing | DIF_stipe_shell | 0.968440 | no |
| Casing | DIF_stipe_skin | 0.930382 | no |
| Casing | DIF_cap_skin | 0.550526 | no |
| Casing | DIF_cap_tissue | 0.405428 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.331440 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.377918 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.111957 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.413791 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.125142 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.933992 | no |
| DIF_gill_tissue | YFB_veil | 0.653374 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.968565 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.735987 | no |
| YFB_stipe_center | YFB_cap_skin | 0.958477 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.763373 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.450665 | no |
| YFB_stipe_center | YFB_veil | 0.089805 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.682999 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.989164 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.715075 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.501704 | no |
| YFB_stipe_shell | YFB_veil | 0.104587 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.677830 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.985768 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.180575 | no |
| YFB_stipe_skin | YFB_veil | 0.022892 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.705773 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.529634 | no |
| YFB_cap_skin | YFB_veil | 0.117937 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.203039 | no |
| YFB_cap_tissue | YFB_veil | 0.029408 | yes |
| YFB_gill_tissue | YFB_veil | 0.564465 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.000613 | yes |
| Initials | YFB_cap_skin | 0.000613 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.000613 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.000613 | yes |
| Initials | Pileal_Stipeal_shell | 0.000613 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.000613 | yes |
| Initials | DIF_stipe_skin | 0.000613 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.504737 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.890432 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.929519 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.571094 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.942282 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.603257 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.622967 | no |
| Pileal_Stipeal_center | YFB_veil | 0.165164 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.579205 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.711887 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.754323 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.571554 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.868685 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.719565 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.958814 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.393505 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.444926 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.144300 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.484085 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.165935 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.978459 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.590308 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.920707 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.263495 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.146322 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.768994 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.913118 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.868049 | no |
| DIF_stipe_center | YFB_stipe_center | 0.533815 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.586294 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.228711 | no |
| DIF_stipe_center | YFB_cap_skin | 0.621080 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.253470 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.945928 | no |
| DIF_stipe_center | YFB_veil | 0.463813 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.379821 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.230353 | no |
| DIF_stipe_center | DIF_cap_skin | 0.883593 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.994271 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.219303 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.890525 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.853643 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.880981 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.843154 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.898944 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.310882 | no |
| DIF_stipe_shell | YFB_veil | 0.048007 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.878007 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.550301 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.385707 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.120972 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.729233 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.675667 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.994908 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.671216 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.982019 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.183056 | no |
| DIF_stipe_skin | YFB_veil | 0.020523 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.372829 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.236368 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.702021 | no |
| DIF_cap_skin | YFB_stipe_center | 0.712882 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.761580 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.367491 | no |
| DIF_cap_skin | YFB_cap_skin | 0.786231 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.397222 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.809486 | no |
| DIF_cap_skin | YFB_veil | 0.291052 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.888964 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.862497 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.545080 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.597035 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.236585 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.632966 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.261033 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.939352 | no |
| DIF_cap_tissue | YFB_veil | 0.453989 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|115340 MFILFKIFHDIAFFSWDLGLTFVNLVLPNRPVGKVTPEGHPGYGGKWPEYIPPKEGDSRCSCPALNAMANHGILP RDGKNIQFKEMGRLIRTTYNFSSSFCYFVPHYAAEKVVKKDYNKDTFNLDELDHHNGIEHDASLCREDSALCPDQ SKPHVEYITQLLAHATGKDKDGNPLLTMKDLAKYSSKRRADARSYNKKFTLGFIHRMFGSSNSSTMLTIFGGRVK DLETVLLEERLPENWESRVRGKMGLTFAAFNLTVTPVELMISEKKYLKEKAAKEANKDD* |
| Coding | >AgabiH97|115340 ATGTTCATCCTTTTCAAGATTTTTCACGACATCGCCTTCTTTTCATGGGACCTCGGTCTGACTTTTGTAAACCTC GTCCTTCCGAACAGGCCAGTGGGGAAGGTTACGCCAGAGGGTCATCCCGGGTATGGTGGAAAATGGCCTGAATAT ATTCCTCCAAAGGAGGGTGATAGCAGATGCTCATGTCCGGCATTGAACGCTATGGCGAATCATGGTATACTCCCT CGTGACGGCAAAAACATCCAGTTCAAAGAGATGGGCAGACTTATCAGGACCACCTACAACTTTTCTTCGAGTTTC TGCTACTTCGTACCCCACTACGCCGCCGAAAAAGTAGTGAAGAAGGATTATAACAAAGACACGTTTAATCTTGAC GAACTTGATCATCACAATGGTATAGAGCATGACGCTTCTCTCTGTCGCGAAGATAGCGCCCTCTGTCCCGATCAA AGCAAGCCTCATGTCGAATACATCACGCAACTTCTTGCACACGCCACAGGCAAGGACAAAGATGGCAATCCTCTC CTCACCATGAAGGATCTTGCAAAGTACTCATCCAAACGTCGCGCTGATGCCCGAAGCTATAATAAGAAATTCACT CTCGGCTTTATTCATCGCATGTTTGGAAGTTCCAACTCATCCACTATGCTGACCATTTTCGGTGGACGTGTCAAA GATCTTGAAACTGTCTTACTTGAAGAACGACTTCCCGAGAATTGGGAATCGAGGGTTCGGGGAAAGATGGGCTTG ACATTCGCGGCATTCAATCTCACAGTGACACCGGTCGAGCTTATGATCAGTGAAAAGAAATATCTTAAAGAAAAG GCTGCCAAGGAAGCCAACAAAGACGATTAA |
| Transcript | >AgabiH97|115340 ATGTTCATCCTTTTCAAGATTTTTCACGACATCGCCTTCTTTTCATGGGACCTCGGTCTGACTTTTGTAAACCTC GTCCTTCCGAACAGGCCAGTGGGGAAGGTTACGCCAGAGGGTCATCCCGGGTATGGTGGAAAATGGCCTGAATAT ATTCCTCCAAAGGAGGGTGATAGCAGATGCTCATGTCCGGCATTGAACGCTATGGCGAATCATGGTATACTCCCT CGTGACGGCAAAAACATCCAGTTCAAAGAGATGGGCAGACTTATCAGGACCACCTACAACTTTTCTTCGAGTTTC TGCTACTTCGTACCCCACTACGCCGCCGAAAAAGTAGTGAAGAAGGATTATAACAAAGACACGTTTAATCTTGAC GAACTTGATCATCACAATGGTATAGAGCATGACGCTTCTCTCTGTCGCGAAGATAGCGCCCTCTGTCCCGATCAA AGCAAGCCTCATGTCGAATACATCACGCAACTTCTTGCACACGCCACAGGCAAGGACAAAGATGGCAATCCTCTC CTCACCATGAAGGATCTTGCAAAGTACTCATCCAAACGTCGCGCTGATGCCCGAAGCTATAATAAGAAATTCACT CTCGGCTTTATTCATCGCATGTTTGGAAGTTCCAACTCATCCACTATGCTGACCATTTTCGGTGGACGTGTCAAA GATCTTGAAACTGTCTTACTTGAAGAACGACTTCCCGAGAATTGGGAATCGAGGGTTCGGGGAAAGATGGGCTTG ACATTCGCGGCATTCAATCTCACAGTGACACCGGTCGAGCTTATGATCAGTGAAAAGAAATATCTTAAAGAAAAG GCTGCCAAGGAAGCCAACAAAGACGATTAA |
| Gene | >AgabiH97|115340 ATGTTCATCCTTTTCAAGATTTTTCACGACATCGCCTTCTTTTCATGGGACCTCGGTCTGACTTTTGTAAACCTC GTCCTTCCGAACAGGCCAGTGGGGAAGGTTACGCCAGAGGGTCATCCCGGGTATGGTGGAAAATGGCCTGAATAT ATTCCTCCAAAGGAGGGTGATAGCAGATGCTCATGTCCGGCATTGAACGCTATGGCGAATCATGGTGAGATCTCC CTTGTAAAATAAAAAAAGACTTCATGTGTGATTTTAACACACATTGTTAACCTAGGTATACTCCCTCGTGACGGC AAAAACATCCAGTTCAAAGAGATGGGCAGACTTATCAGGACCACCTACAACTTTTCTTCGAGTTTCTGCTACTTC GTACCCCACTACGCCGCCGAAAAAGTAGTGAAGAAGGATTATAACAAAGACACGTTTAATCTTGACGAACTTGAT CATCACAATGGTATAGAGCATGACGCTTCTCTCTGTCGTAAGTTCATCATCTTGTTTAAACAAATTCGGCAGCCA ACTAACTCGCCCCTTGTTCACCAGGCGAAGATAGCGCCCTCTGTCCCGATCAAAGCAAGCCTCATGTCGAATACA TCACGCAACTTCTTGCACACGCCACAGGCAAGGACAAAGATGGCAATCCTCTCCTCACCATGAAGGATCTTGCAA AGTACTCATCCAAACGTCGCGCTGATGCCCGAAGCTATAATAAGAAATTCACTCTCGGCTTTATTCATCGCATGT TTGGAAGTTCCAAGTGAGTCATCTGTCGATAATCAGTTTTACTAGGACTGACAAATGATGTGATGTACGTGATAT ATCAGCTCATCCACTATGCTGACCATTTTCGGTGGACGTGTCAAAGATCTTGAAACTGTCTTACTTGAAGAACGA CTTCCCGAGAATTGGGAATCGAGGGTTCGGGGAAAGATGGGCTTGACATTCGCGGCATTCAATCTCACAGTGACA CCGGTCGAGCTTATGATCAGTGAAAAGAAATATCTTAAAGAAAAGGCTGCCAAGGAAGCCAACAAAGACGGTGCT TCTGCTGTCCCGAACCCTGATATACCATGAAACTGATTTAATGTCATGAGATTAA |