Protein ID | AgabiH97|114570 |
Gene name | |
Location | scaffold_9:259859..261818 |
Strand | + |
Gene length (bp) | 1959 |
Transcript length (bp) | 1416 |
Coding sequence length (bp) | 1416 |
Protein length (aa) | 472 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05426 | Alginate_lyase | Alginate lyase | 3.4E-61 | 73 | 363 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016829 | lyase activity | Yes |
GO:0042597 | periplasmic space | Yes |
GO:0005575 | cellular_component | No |
GO:0003674 | molecular_function | No |
GO:0003824 | catalytic activity | No |
GO:0110165 | cellular anatomical entity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 30 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 48.11 | 22.81 | 73.41 |
Initials | Initials knots | 12.92 | 6.65 | 19.18 |
Pileal_Stipeal_center | Stage I stipe center | 16.00 | 8.25 | 23.74 |
Pileal_Stipeal_shell | Stage I stipe shell | 52.49 | 30.29 | 74.69 |
DIF_stipe_center | Stage II stipe center | 3.27 | 1.37 | 5.17 |
DIF_stipe_shell | Stage II stipe shell | 2.75 | 1.09 | 4.40 |
DIF_stipe_skin | Stage II stipe skin | 16.50 | 8.53 | 24.47 |
DIF_cap_skin | Stage II cap skin | 39.98 | 23.26 | 56.70 |
DIF_cap_tissue | Stage II cap tissue | 24.26 | 13.41 | 35.12 |
DIF_gill_tissue | Stage II gill tissue | 26.51 | 14.44 | 38.58 |
YFB_stipe_center | Young fruiting body stipe center | 7.62 | 3.13 | 12.12 |
YFB_stipe_shell | Young fruiting body stipe shell | 2.36 | 0.91 | 3.81 |
YFB_stipe_skin | Young fruiting body stipe skin | 10.90 | 5.38 | 16.43 |
YFB_cap_skin | Young fruiting body cap skin | 26.79 | 15.13 | 38.45 |
YFB_cap_tissue | Young fruiting body cap tissue | 2.51 | 1.00 | 4.03 |
YFB_gill_tissue | Young fruiting body gill tissue | 40.24 | 23.42 | 57.07 |
YFB_veil | Young fruiting body veil | 40.57 | 23.33 | 57.81 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.076803 | no |
Casing | YFB_stipe_center | 0.000613 | yes |
Casing | YFB_stipe_shell | 0.000613 | yes |
Casing | YFB_stipe_skin | 0.000613 | yes |
Casing | YFB_cap_skin | 0.078769 | no |
Casing | YFB_cap_tissue | 0.000613 | yes |
Casing | YFB_gill_tissue | 0.698319 | no |
Casing | YFB_veil | 0.723061 | no |
Casing | Initials | 0.000613 | yes |
Casing | Pileal_Stipeal_center | 0.001625 | yes |
Casing | Pileal_Stipeal_shell | 0.878407 | no |
Casing | DIF_stipe_center | 0.000613 | yes |
Casing | DIF_stipe_shell | 0.000613 | yes |
Casing | DIF_stipe_skin | 0.001140 | yes |
Casing | DIF_cap_skin | 0.686844 | no |
Casing | DIF_cap_tissue | 0.041603 | yes |
DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_skin | 0.003365 | yes |
DIF_gill_tissue | YFB_cap_skin | 0.985489 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_gill_tissue | 0.187053 | no |
DIF_gill_tissue | YFB_veil | 0.186930 | no |
YFB_stipe_center | YFB_stipe_shell | 0.001140 | yes |
YFB_stipe_center | YFB_stipe_skin | 0.423173 | no |
YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.003365 | yes |
YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_veil | 0.000613 | yes |
YFB_stipe_shell | YFB_stipe_skin | 0.000613 | yes |
YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.936308 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_shell | YFB_veil | 0.000613 | yes |
YFB_stipe_skin | YFB_cap_skin | 0.002951 | yes |
YFB_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_veil | 0.000613 | yes |
YFB_cap_skin | YFB_cap_tissue | 0.000613 | yes |
YFB_cap_skin | YFB_gill_tissue | 0.190735 | no |
YFB_cap_skin | YFB_veil | 0.191220 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
YFB_cap_tissue | YFB_veil | 0.000613 | yes |
YFB_gill_tissue | YFB_veil | 0.988311 | no |
Initials | DIF_gill_tissue | 0.020260 | yes |
Initials | YFB_stipe_center | 0.174631 | no |
Initials | YFB_stipe_shell | 0.000613 | yes |
Initials | YFB_stipe_skin | 0.741726 | no |
Initials | YFB_cap_skin | 0.015242 | yes |
Initials | YFB_cap_tissue | 0.000613 | yes |
Initials | YFB_gill_tissue | 0.000613 | yes |
Initials | YFB_veil | 0.000613 | yes |
Initials | Pileal_Stipeal_center | 0.652873 | no |
Initials | Pileal_Stipeal_shell | 0.000613 | yes |
Initials | DIF_stipe_center | 0.000613 | yes |
Initials | DIF_stipe_shell | 0.000613 | yes |
Initials | DIF_stipe_skin | 0.589781 | no |
Initials | DIF_cap_skin | 0.000613 | yes |
Initials | DIF_cap_tissue | 0.046536 | yes |
Pileal_Stipeal_center | DIF_gill_tissue | 0.134571 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.036455 | yes |
Pileal_Stipeal_center | YFB_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_skin | 0.328018 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.113810 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.002084 | yes |
Pileal_Stipeal_center | YFB_veil | 0.001625 | yes |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_skin | 0.962704 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.002525 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.244911 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.014956 | yes |
Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_cap_skin | 0.011968 | yes |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.452620 | no |
Pileal_Stipeal_shell | YFB_veil | 0.480337 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_cap_skin | 0.440393 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.005671 | yes |
DIF_stipe_center | DIF_gill_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_stipe_center | 0.025711 | yes |
DIF_stipe_center | YFB_stipe_shell | 0.536668 | no |
DIF_stipe_center | YFB_stipe_skin | 0.000613 | yes |
DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_center | YFB_cap_tissue | 0.638304 | no |
DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_veil | 0.000613 | yes |
DIF_stipe_center | DIF_stipe_shell | 0.783825 | no |
DIF_stipe_center | DIF_stipe_skin | 0.000613 | yes |
DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
DIF_stipe_center | DIF_cap_tissue | 0.000613 | yes |
DIF_stipe_shell | DIF_gill_tissue | 0.000613 | yes |
DIF_stipe_shell | YFB_stipe_center | 0.004928 | yes |
DIF_stipe_shell | YFB_stipe_shell | 0.827012 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.000613 | yes |
DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_shell | YFB_cap_tissue | 0.909952 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_shell | YFB_veil | 0.000613 | yes |
DIF_stipe_shell | DIF_stipe_skin | 0.000613 | yes |
DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
DIF_stipe_shell | DIF_cap_tissue | 0.000613 | yes |
DIF_stipe_skin | DIF_gill_tissue | 0.166446 | no |
DIF_stipe_skin | YFB_stipe_center | 0.028437 | yes |
DIF_stipe_skin | YFB_stipe_shell | 0.000613 | yes |
DIF_stipe_skin | YFB_stipe_skin | 0.276624 | no |
DIF_stipe_skin | YFB_cap_skin | 0.145518 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
DIF_stipe_skin | YFB_gill_tissue | 0.002084 | yes |
DIF_stipe_skin | YFB_veil | 0.002525 | yes |
DIF_stipe_skin | DIF_cap_skin | 0.002951 | yes |
DIF_stipe_skin | DIF_cap_tissue | 0.288884 | no |
DIF_cap_skin | DIF_gill_tissue | 0.197111 | no |
DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
DIF_cap_skin | YFB_cap_skin | 0.198538 | no |
DIF_cap_skin | YFB_cap_tissue | 0.000613 | yes |
DIF_cap_skin | YFB_gill_tissue | 0.990471 | no |
DIF_cap_skin | YFB_veil | 0.979484 | no |
DIF_cap_skin | DIF_cap_tissue | 0.098108 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.875171 | no |
DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
DIF_cap_tissue | YFB_stipe_skin | 0.009123 | yes |
DIF_cap_tissue | YFB_cap_skin | 0.850346 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.000613 | yes |
DIF_cap_tissue | YFB_gill_tissue | 0.088095 | no |
DIF_cap_tissue | YFB_veil | 0.086416 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|114570 MASTTLLSRTVTLRSLALALLVSTGVVRAVTSYANDFADPDYIVSGNFGKNTQAAQNTIVEWAKDSAVGGPWSVT SKPYTPPSGDKHDYMSWSPYWWPDCSEAGNKTELTPEQIWTTCPYKQRDGLFNPDVREINDIGHFESLADAVLYN TLAWSISQDRTYADTAAKFIKTWFLDDATRMNPNLNYGQVKRGPGNSNGTHTGLLDLKCMTKVVNGILILRKTNS SAWPGDMDSGMNTWVQQYIAWLETATIANEEQSAANNHGTFFYNQLASLKILLGDFAGARNVTDMYFNGIYMNQI VEGGEQPLEAIRTRPYHYRAYNLAAMITNARLAQYADRNAPSMWNKTTEEGSTIKDALDYAMTISPSASHEDNYA QELYLNVAAVASVYGDPDGKYATFLDQKEPQFVQEPFYLWNQPFAMKEGLAAAPNNTKPNNNASNPKNNNSAMSG RSVNDIGLYTVILSYLVYLLT* |
Coding | >AgabiH97|114570 ATGGCCTCCACTACACTCCTTTCCCGAACTGTGACACTACGCTCCCTCGCTCTAGCTTTACTTGTTTCCACTGGC GTCGTACGAGCTGTCACAAGCTATGCCAATGATTTCGCCGATCCGGACTATATCGTCAGCGGAAATTTTGGAAAG AACACGCAAGCAGCGCAGAATACGATTGTTGAGTGGGCCAAAGATAGTGCGGTCGGTGGTCCTTGGTCGGTAACG AGCAAGCCTTATACGCCACCGTCGGGCGATAAACATGATTACATGAGTTGGAGCCCTTATTGGTGGCCTGATTGT TCTGAGGCAGGCAACAAGACTGAACTCACACCTGAGCAGATCTGGACAACATGCCCGTACAAACAACGTGATGGT TTATTTAATCCGGACGTCCGTGAAATCAACGATATCGGACACTTCGAGTCGCTTGCCGATGCTGTTTTGTACAAT ACCCTTGCTTGGAGTATATCACAGGACCGCACCTACGCGGACACCGCAGCCAAGTTCATCAAGACATGGTTTCTT GATGATGCCACTCGCATGAACCCCAACCTTAATTATGGCCAGGTAAAGCGTGGCCCTGGAAATTCAAACGGCACA CATACCGGTCTTTTGGACCTCAAATGTATGACCAAGGTTGTTAACGGTATCCTCATCTTGCGAAAGACCAATAGC TCCGCATGGCCCGGCGACATGGATAGTGGAATGAACACCTGGGTCCAGCAATATATCGCGTGGCTCGAAACTGCT ACAATTGCAAATGAAGAACAGTCGGCAGCCAATAATCACGGTACATTTTTCTATAATCAGCTCGCTTCTCTCAAA ATTCTGCTTGGAGATTTTGCTGGCGCAAGAAATGTGACAGATATGTATTTCAATGGTATTTATATGAACCAGATC GTCGAAGGAGGGGAACAGCCCTTGGAAGCCATACGAACTAGACCCTACCATTACCGAGCATACAATTTGGCCGCT ATGATTACCAATGCACGCCTCGCCCAATATGCAGACCGCAATGCTCCGTCGATGTGGAATAAGACGACAGAAGAG GGTTCTACCATCAAAGATGCGCTCGATTACGCAATGACGATTTCTCCTAGTGCCAGCCATGAAGATAATTACGCA CAGGAGCTGTATCTCAACGTGGCTGCCGTTGCTTCTGTTTATGGGGACCCCGATGGAAAATATGCCACATTTTTG GACCAGAAGGAGCCACAGTTTGTACAAGAGCCGTTTTATTTGTGGAACCAGCCGTTTGCTATGAAGGAGGGATTG GCCGCTGCTCCTAATAATACTAAACCCAACAACAACGCTAGTAATCCGAAGAACAACAACAGTGCGATGTCTGGG AGGAGTGTGAACGATATTGGACTATACACAGTTATTCTAAGCTATCTTGTTTATTTGTTGACCTAA |
Transcript | >AgabiH97|114570 ATGGCCTCCACTACACTCCTTTCCCGAACTGTGACACTACGCTCCCTCGCTCTAGCTTTACTTGTTTCCACTGGC GTCGTACGAGCTGTCACAAGCTATGCCAATGATTTCGCCGATCCGGACTATATCGTCAGCGGAAATTTTGGAAAG AACACGCAAGCAGCGCAGAATACGATTGTTGAGTGGGCCAAAGATAGTGCGGTCGGTGGTCCTTGGTCGGTAACG AGCAAGCCTTATACGCCACCGTCGGGCGATAAACATGATTACATGAGTTGGAGCCCTTATTGGTGGCCTGATTGT TCTGAGGCAGGCAACAAGACTGAACTCACACCTGAGCAGATCTGGACAACATGCCCGTACAAACAACGTGATGGT TTATTTAATCCGGACGTCCGTGAAATCAACGATATCGGACACTTCGAGTCGCTTGCCGATGCTGTTTTGTACAAT ACCCTTGCTTGGAGTATATCACAGGACCGCACCTACGCGGACACCGCAGCCAAGTTCATCAAGACATGGTTTCTT GATGATGCCACTCGCATGAACCCCAACCTTAATTATGGCCAGGTAAAGCGTGGCCCTGGAAATTCAAACGGCACA CATACCGGTCTTTTGGACCTCAAATGTATGACCAAGGTTGTTAACGGTATCCTCATCTTGCGAAAGACCAATAGC TCCGCATGGCCCGGCGACATGGATAGTGGAATGAACACCTGGGTCCAGCAATATATCGCGTGGCTCGAAACTGCT ACAATTGCAAATGAAGAACAGTCGGCAGCCAATAATCACGGTACATTTTTCTATAATCAGCTCGCTTCTCTCAAA ATTCTGCTTGGAGATTTTGCTGGCGCAAGAAATGTGACAGATATGTATTTCAATGGTATTTATATGAACCAGATC GTCGAAGGAGGGGAACAGCCCTTGGAAGCCATACGAACTAGACCCTACCATTACCGAGCATACAATTTGGCCGCT ATGATTACCAATGCACGCCTCGCCCAATATGCAGACCGCAATGCTCCGTCGATGTGGAATAAGACGACAGAAGAG GGTTCTACCATCAAAGATGCGCTCGATTACGCAATGACGATTTCTCCTAGTGCCAGCCATGAAGATAATTACGCA CAGGAGCTGTATCTCAACGTGGCTGCCGTTGCTTCTGTTTATGGGGACCCCGATGGAAAATATGCCACATTTTTG GACCAGAAGGAGCCACAGTTTGTACAAGAGCCGTTTTATTTGTGGAACCAGCCGTTTGCTATGAAGGAGGGATTG GCCGCTGCTCCTAATAATACTAAACCCAACAACAACGCTAGTAATCCGAAGAACAACAACAGTGCGATGTCTGGG AGGAGTGTGAACGATATTGGACTATACACAGTTATTCTAAGCTATCTTGTTTATTTGTTGACCTAA |
Gene | >AgabiH97|114570 ATGGCCTCCACTACACTCCTTTCCCGAACTGTGACACTACGCTCCCTCGCTCTAGCTTTACTTGTTTCCACTGGC GTCGTACGAGCTGTCACAAGCTATGCCAATGATTTCGCCGATCCGGACTATATCGTCAGCGGAAATTTTGGAAAG AACACGCAAGCAGCGCAGAATACGATTGTTGAGTGGGCCAAAGATAGTGCGGTCGGTGGTCCTTGGTGTACGTCC CCAAAAATTTATTGTCAAGTTTCACTAGTCCTTAAGATTTCGGTTCTAAAGCGGTAACGAGCAAGCCTTATACGC CACCGTCGGGCGATAAACATGATTACATGAGTTGGAGCCCTTAGTAAGTGGCTAGATTTTGGTGTGCGATGTTCT CCTGGAGCTCAGAGTATATGCGGCTATTTGCAGTTGGTGGCCTGATTGTTCTGAGGCAGGCAACAAGACTGAACT CACACCTGAGCAGAGTATGTTTGTGTTCAAACTTTTTTCGAAAGAGCAACTAATGAGTGACGCAACATGCGTAGT CTGGACAACATGCCCGTACAAACAACGTGATGGTTTATTTAATCCGGACGTCCGTGAAATCAACGATATCGGACA CTTCGAGTCGCTTGCCGATGCTGTTTTGTACAATACCCTTGCTTGGAGTATATCACAGGACCGCACCTACGCGGA CACCGCAGGTGAGTCTGACACTTTGAGTTTGATGCGCAGCGTGGTGTGCTATTTTTGAGCGGCGGGAAGTCTAAT AAGACACGGCTTCTCGTCGTCCGGTGCCTTGTTCCGTGTTTCCCGCAGTAATTATGGTTCTGAATCTTCCCATCC GCAGCCAAGTTCATCAAGACATGGTTTCTTGATGATGCCACTCGCATGAACCCCAACCTTAATTATGGCCAGGTA AAGCGTGGCCCTGGAAATTCAAACGGCACACATACCGGTCTTTTGTACGGGCCACTGACAATTTCCTCGTTGTGG AGGAGTTTCTGATCATGCATGCAGGGACCTCAAATGTATGACCAAGGTTGTTAACGGTATCCTCATCTTGCGAAA GACCAATAGCTCCGCATGGCCCGGCGACATGGATAGTGGAATGAACACCTGGGTCCAGCAATATATCGCGTGGCT CGAAACTGCTACAATTGCAAATGAAGAACAGTCGGCAGCCAAGTAATTGATTATTATATACTCGATCCAGGCATA ATGAACTGACGCTCGCCAGTAATCACGGTACATTTTTCTATAATCAGCTCGCTTCTCTCAAAATTCTGCTTGGAG ATTTTGCTGGCGCAAGAAATGTGACAGATATGTATTTCAATGGTATTTATATGAACCAGATCGTCGAAGGAGGGG AACAGGTGAATACGCACGTTCTTTAGGTCTTGAAATGTCTCATTCACGTCATTCCAGCCCTTGGAAGCCATACGA ACTAGACCCTACCATTACCGAGCATACAATTTGGCCGCTATGATTGTATGTTTATATTTCCTTTATGTCGCCCCC ATTTCCTGATGAATGGTGATATAGACCAATGCACGCCTCGCCCAATATGCAGACCGCAATGCTCCGTCGATGTGG AATAAGACGACAGAAGAGGGTTCTACCATCAAAGATGCGCTCGATTACGCAATGACGATTTCTCCTAGTGCCAGC CATGAAGATAATTACGCACAGGAGCTGTATCTCAACGTGGCTGCCGTTGCTTCTGTTTATGGGGACCCCGATGGA AAATATGCCACATTTTTGGACCAGAAGGAGCCACAGTTTGTACAAGAGCCGTTTTATTTGTGGAACCAGCCGTTT GCTATGAAGGAGGGATTGGCCGCTGCTCCTAATAATACTAAACCCAACAACAACGCTAGTAATCCGAAGAACAAC AACAGTGCGATGTCTGGGAGGAGTGTGAACGATATTGGACTATACACAGTTATTCTAAGCTATCTTGTTTATTTG TTGACCTAA |