Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|114460
Gene name
Locationscaffold_9:237134..237573
Strand-
Gene length (bp)439
Transcript length (bp)282
Coding sequence length (bp)282
Protein length (aa) 94

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05730 CFEM CFEM domain 1.3E-10 25 86

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|114460
MRLSFALAVAALASTVSASLVARQASLPACALLCITQADSGDCKATDNVCLCNKERFLVSFIRCINFSCQGGDIE
TALNVGNQLCAAINGNNT*
Coding >AgabiH97|114460
ATGCGTCTCTCCTTTGCCCTCGCTGTCGCCGCTCTCGCATCTACCGTCTCTGCTAGCCTTGTCGCTCGCCAGGCC
AGTCTTCCAGCCTGTGCTCTGCTATGTATCACGCAAGCTGACTCTGGTGACTGCAAGGCCACCGACAACGTCTGT
CTCTGCAACAAGGAACGTTTCCTCGTCTCATTCATCCGCTGTATCAATTTTTCCTGCCAGGGCGGTGACATCGAA
ACCGCTTTGAACGTAGGTAATCAGCTTTGTGCCGCCATTAACGGGAACAATACTTGA
Transcript >AgabiH97|114460
ATGCGTCTCTCCTTTGCCCTCGCTGTCGCCGCTCTCGCATCTACCGTCTCTGCTAGCCTTGTCGCTCGCCAGGCC
AGTCTTCCAGCCTGTGCTCTGCTATGTATCACGCAAGCTGACTCTGGTGACTGCAAGGCCACCGACAACGTCTGT
CTCTGCAACAAGGAACGTTTCCTCGTCTCATTCATCCGCTGTATCAATTTTTCCTGCCAGGGCGGTGACATCGAA
ACCGCTTTGAACGTAGGTAATCAGCTTTGTGCCGCCATTAACGGGAACAATACTTGA
Gene >AgabiH97|114460
ATGCGTCTCTCCTTTGCCCTCGCTGTCGCCGCTCTCGCATCTACCGTCTCTGCTAGCCTTGTCGCTCGCCAGGCC
AGTCTTCCAGGTAGATCCCCCTAGCTAATGCGCCCCTTTTAACATTCTTAATCCTCCTCTCTCACAGCCTGTGCT
CTGCTATGTATCACGCAAGCTGACTCTGGTGACTGCAAGGCCACCGACAACGTCTGTCTCTGCAACAAGGAACGT
TTCCTCGTCTCATTCATCCGCTGTATCAATTTTTCCTGCCAGGGCGGTGACATCGAAACCGCTTTGAACGTAGGT
AATCAGCTTTGTGCCGCCATTGTATGTAGTTTTTCATTTCCCAAGCCCTAGAGCAGCTATTTCGTCCTTGATGGC
CATATTGAGGGTTTTTTCATTATCAGCTATTGATGTCACTGTTTAGAACGGGAACAATACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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