Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|114370
Gene name
Location	scaffold_9:209261..210932
Strand	-
Gene length (bp)	1671
Transcript length (bp)	1347
Coding sequence length (bp)	1347
Protein length (aa)	449

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07767	Nop53	Nop53 (60S ribosomal biogenesis)	1.3E-93	26	415

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UUI4\|YIY9_SCHPO	Uncharacterized protein C22F8.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22F8.09 PE=1 SV=1	17	447	2.0E-43
sp\|Q9NZM5\|GSCR2_HUMAN	Glioma tumor suppressor candidate region gene 2 protein OS=Homo sapiens GN=GLTSCR2 PE=1 SV=2	32	438	2.0E-18
sp\|Q9W3C2\|GSCR2_DROME	Uncharacterized protein CG1785 OS=Drosophila melanogaster GN=CG1785 PE=2 SV=1	214	445	8.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 39	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|114370 MTSSLKSSEKSSKSSVGAPAQLSQASRKGKKAWRKNVDIGEVEVGLEGMRAEERVTGKTLQKAANDELFVIDTIG DEQIRKTLPRRFSNSALTSAKILSQRSAVPAVYSRINSTNAVDREKKRKMSREEKDRLLRIAKRPKKGPFNAVMD PSEYQAGHSVVELSGAVKESGGYDPWDSKVEDEVAEDLPKAKKVKAPATTRVRDQIAIPAVSEPHPGISYNPPVN AHQELIAHAAAEEEKRLKEQDNLAKVKIKMEEARLENSDAIGTSRGAPGMKIDEPLDEDVKEEEADNAIVKPLSL QRKTKAQRNREAKLLSEKHALAQKAADKRLMASLSLARGLRRSMAKSIAERELEILQKKSALKYRLKKHGLAGQR LGKHKVPEGQVDVQLGEDLTETLRGLKPEGNLFRDRFLSLQQRAIIEPRVPVLPRKRKIRIVEYEKHAWKRFE*
Coding	>AgabiH97\|114370 ATGACCTCTTCACTAAAATCAAGCGAGAAATCTAGTAAATCGAGTGTGGGAGCTCCTGCACAACTTAGTCAGGCT AGCAGGAAAGGGAAGAAGGCGTGGAGGAAAAATGTAGATATCGGAGAGGTGGAGGTGGGATTAGAGGGTATGAGG GCTGAGGAAAGAGTGACCGGGAAAACTCTGCAAAAAGCCGCGAACGACGAGCTTTTCGTGATTGATACTATTGGC GATGAACAAATTAGAAAAACACTTCCACGCCGATTTTCAAACTCTGCGCTCACATCGGCAAAAATCCTCTCGCAG CGTTCTGCCGTACCTGCCGTGTATTCGCGGATTAATTCAACAAATGCTGTTGACCGAGAGAAGAAGAGGAAAATG TCAAGAGAAGAGAAGGATCGCTTGCTTAGAATTGCGAAGAGACCGAAGAAAGGACCCTTCAATGCTGTGATGGAC CCTTCTGAATACCAGGCCGGACATAGTGTTGTGGAGTTGAGCGGCGCGGTCAAGGAGAGTGGTGGTTATGATCCT TGGGACAGCAAAGTTGAAGATGAAGTGGCGGAAGATTTACCGAAGGCGAAAAAAGTCAAGGCACCCGCGACGACG CGCGTACGGGATCAAATTGCCATTCCTGCCGTATCAGAACCACACCCGGGAATATCATATAACCCGCCTGTGAAT GCACACCAAGAACTTATCGCCCATGCAGCCGCGGAGGAAGAGAAGCGACTGAAAGAACAAGACAATCTGGCAAAG GTCAAAATCAAGATGGAAGAGGCTCGGTTGGAAAATAGTGACGCTATTGGCACTTCCCGAGGTGCACCGGGAATG AAGATAGACGAACCATTGGATGAAGATGTGAAGGAAGAAGAGGCGGATAATGCCATTGTGAAGCCTCTTTCACTG CAAAGAAAGACAAAGGCACAGAGGAATAGAGAGGCCAAACTTCTTTCAGAGAAACATGCATTGGCACAAAAAGCC GCAGATAAACGACTCATGGCTTCGCTATCACTCGCGAGAGGATTGAGACGATCCATGGCCAAATCCATAGCCGAA CGCGAATTGGAAATATTGCAAAAAAAATCTGCCCTTAAATATCGGTTGAAAAAGCATGGACTTGCGGGCCAACGG CTAGGCAAACACAAGGTACCCGAAGGCCAAGTCGACGTACAGTTAGGCGAAGACCTGACTGAGACCTTACGCGGA CTCAAGCCTGAAGGAAATCTTTTCCGTGACCGATTCCTAAGCTTACAGCAGAGAGCGATCATTGAGCCTCGCGTT CCAGTCTTACCCAGGAAACGGAAGATACGGATCGTAGAGTACGAGAAACATGCATGGAAGCGGTTTGAGTAG
Transcript	>AgabiH97\|114370 ATGACCTCTTCACTAAAATCAAGCGAGAAATCTAGTAAATCGAGTGTGGGAGCTCCTGCACAACTTAGTCAGGCT AGCAGGAAAGGGAAGAAGGCGTGGAGGAAAAATGTAGATATCGGAGAGGTGGAGGTGGGATTAGAGGGTATGAGG GCTGAGGAAAGAGTGACCGGGAAAACTCTGCAAAAAGCCGCGAACGACGAGCTTTTCGTGATTGATACTATTGGC GATGAACAAATTAGAAAAACACTTCCACGCCGATTTTCAAACTCTGCGCTCACATCGGCAAAAATCCTCTCGCAG CGTTCTGCCGTACCTGCCGTGTATTCGCGGATTAATTCAACAAATGCTGTTGACCGAGAGAAGAAGAGGAAAATG TCAAGAGAAGAGAAGGATCGCTTGCTTAGAATTGCGAAGAGACCGAAGAAAGGACCCTTCAATGCTGTGATGGAC CCTTCTGAATACCAGGCCGGACATAGTGTTGTGGAGTTGAGCGGCGCGGTCAAGGAGAGTGGTGGTTATGATCCT TGGGACAGCAAAGTTGAAGATGAAGTGGCGGAAGATTTACCGAAGGCGAAAAAAGTCAAGGCACCCGCGACGACG CGCGTACGGGATCAAATTGCCATTCCTGCCGTATCAGAACCACACCCGGGAATATCATATAACCCGCCTGTGAAT GCACACCAAGAACTTATCGCCCATGCAGCCGCGGAGGAAGAGAAGCGACTGAAAGAACAAGACAATCTGGCAAAG GTCAAAATCAAGATGGAAGAGGCTCGGTTGGAAAATAGTGACGCTATTGGCACTTCCCGAGGTGCACCGGGAATG AAGATAGACGAACCATTGGATGAAGATGTGAAGGAAGAAGAGGCGGATAATGCCATTGTGAAGCCTCTTTCACTG CAAAGAAAGACAAAGGCACAGAGGAATAGAGAGGCCAAACTTCTTTCAGAGAAACATGCATTGGCACAAAAAGCC GCAGATAAACGACTCATGGCTTCGCTATCACTCGCGAGAGGATTGAGACGATCCATGGCCAAATCCATAGCCGAA CGCGAATTGGAAATATTGCAAAAAAAATCTGCCCTTAAATATCGGTTGAAAAAGCATGGACTTGCGGGCCAACGG CTAGGCAAACACAAGGTACCCGAAGGCCAAGTCGACGTACAGTTAGGCGAAGACCTGACTGAGACCTTACGCGGA CTCAAGCCTGAAGGAAATCTTTTCCGTGACCGATTCCTAAGCTTACAGCAGAGAGCGATCATTGAGCCTCGCGTT CCAGTCTTACCCAGGAAACGGAAGATACGGATCGTAGAGTACGAGAAACATGCATGGAAGCGGTTTGAGTAG
Gene	>AgabiH97\|114370 ATGACCTCTTCACTAAAATCAAGCGAGAAATCTAGTAAATCGAGTGTGGGAGCTCCTGCACAACTTAGTCAGGCT AGCAGGAAAGGGAAGAAGGCGTGGAGGAAAAATGTAGATATCGGAGAGGTGGAGGTGGGATTAGAGGGTATGAGG GCTGAGGAAAGAGTGACCGGGTGAGTGGGATTTCATATCCTTTGCTCTGACGAAGGATGCTAATACCGTTTATAG GAAAACTCTGCAAAAAGCCGCGAACGACGAGCTTTTCGTGATTGATACTATTGGCGATGAACAAAGTACGTCTAC AGTTTTTTTTGTTGAGAATGAAATTTGATTTCTTTTTCAAAGTTAGAAAAACACTTCCACGCCGATTTTCAAACT CTGCGCTCACATCGGCAAAAATCCTCTCGCAGCGTTCTGCCGTACCTGCCGTGTATTCGCGGATTAATTCAACAA ATGCTGTTGACCGAGAGAAGAAGAGGAAAATGTCAAGAGAAGAGAAGGATCGCTTGCTTAGAATTGCGAAGAGAC CGAAGAAAGGACCCTTCAATGCTGTGATGGACCCTTCTGAATACCAGGCCGGACATAGTGTTGTGGAGTTGAGCG GCGCGGTCAAGGAGAGTGGTGGTTATGATCCTTGGGACAGCAAAGTTGAAGATGAAGTGGCGGAAGATTTACCGA AGGCGAAAAAAGTCAAGGTGAAAGAGTTGGACTTATCTTCGTTTTGCTAGTACTGATAGTTGTATACAGGCACCC GCGACGACGCGCGTACGGGATCAAATTGCCATTCCTGCCGTATCAGAACCACACCCGGGAATATCATATAACCCG CCTGTGAATGCACACCAAGAACTTATCGCCCATGCAGCCGCGGAGGAAGAGAAGCGACTGAAAGAACAAGACAAT CTGGCAAAGGTCAAAATCAAGATGGAAGAGGCTCGGTTGGAAAATAGTGACGCTATTGGCACTTCCCGAGGTGCA CCGGGAATGAAGATAGACGAACCATTGGATGAAGATGTGAAGGAAGAAGAGGCGGATAATGCCATTGTGAAGCCT CTTTCACTGCAAAGAAAGACAAAGGCACAGAGGAATAGAGAGGCCAAACTTCTTTCAGAGGTATATGTCATTATA TATTCAGTCGTGTTTGTGGATGCTGATAGTTTGGTATAGAAACATGCATTGGCACAAAAAGCCGCAGATAAACGA CTCATGGCTTCGCTATCACTCGCGAGAGGATTGAGACGATCCATGGCCAAATCCATAGCCGAACGCGAATTGGAA ATATTGCAAAAAAAATCTGCCCTTAAATATCGGTTGAAAAAGCATGGACTTGCGGGCCAACGGCTAGGCAAACAC AAGGTACCCGAAGGCCAAGTCGACGTACAGTTAGGCGAAGACCTGACTGAGACCTTACGCGGACTCAAGGTGATT GGTGCTGAGTATCTTGTTTCTGTTGAACTCTTTACTAATGATATTTCATAGCCTGAAGGAAATCTTTTCCGTGAC CGATTCCTAAGCTTACAGCAGAGAGCGATCATTGAGCCTCGCGTTCCAGTCTTGTAAGCAGTCTCGCCGCGTCCA CAGTTCCGTGTACTCAATGCCATGCTTTTCAGACCCAGGAAACGGAAGATACGGATCGTAGAGTACGAGAAACAT GCATGGAAGCGGTTTGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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