Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|113350
Gene name
Location	scaffold_8:1896680..1897289
Strand	+
Gene length (bp)	609
Transcript length (bp)	495
Coding sequence length (bp)	495
Protein length (aa)	165

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	301.50	141.74	461.25
Initials	Initials knots	6.59	2.22	10.95
Pileal_Stipeal_center	Stage I stipe center	18.95	8.21	29.68
Pileal_Stipeal_shell	Stage I stipe shell	31.21	14.75	47.66
DIF_stipe_center	Stage II stipe center	4.24	1.11	7.37
DIF_stipe_shell	Stage II stipe shell	2.80	0.52	5.09
DIF_stipe_skin	Stage II stipe skin	12.35	3.91	20.78
DIF_cap_skin	Stage II cap skin	22.76	9.92	35.60
DIF_cap_tissue	Stage II cap tissue	13.34	5.35	21.34
DIF_gill_tissue	Stage II gill tissue	19.10	7.67	30.54
YFB_stipe_center	Young fruiting body stipe center	3.50	0.73	6.27
YFB_stipe_shell	Young fruiting body stipe shell	3.06	0.67	5.45
YFB_stipe_skin	Young fruiting body stipe skin	8.07	2.90	13.25
YFB_cap_skin	Young fruiting body cap skin	25.02	11.47	38.56
YFB_cap_tissue	Young fruiting body cap tissue	1.14	0.00	2.46
YFB_gill_tissue	Young fruiting body gill tissue	27.70	11.30	44.09
YFB_veil	Young fruiting body veil	19.26	7.97	30.55

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.000613	yes
Casing	YFB_stipe_center	0.000613	yes
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.000613	yes
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.000613	yes
Casing	Pileal_Stipeal_center	0.000613	yes
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.000613	yes
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.001625	yes
DIF_gill_tissue	YFB_stipe_shell	0.000613	yes
DIF_gill_tissue	YFB_stipe_skin	0.032978	yes
DIF_gill_tissue	YFB_cap_skin	0.606857	no
DIF_gill_tissue	YFB_cap_tissue	0.002525	yes
DIF_gill_tissue	YFB_gill_tissue	0.441224	no
DIF_gill_tissue	YFB_veil	0.991241	no
YFB_stipe_center	YFB_stipe_shell	0.890791	no
YFB_stipe_center	YFB_stipe_skin	0.111334	no
YFB_stipe_center	YFB_cap_skin	0.000613	yes
YFB_stipe_center	YFB_cap_tissue	0.157175	no
YFB_stipe_center	YFB_gill_tissue	0.000613	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.046327	yes
YFB_stipe_shell	YFB_cap_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_tissue	0.209955	no
YFB_stipe_shell	YFB_gill_tissue	0.000613	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.002525	yes
YFB_stipe_skin	YFB_cap_tissue	0.019169	yes
YFB_stipe_skin	YFB_gill_tissue	0.001140	yes
YFB_stipe_skin	YFB_veil	0.036228	yes
YFB_cap_skin	YFB_cap_tissue	0.002084	yes
YFB_cap_skin	YFB_gill_tissue	0.881561	no
YFB_cap_skin	YFB_veil	0.626078	no
YFB_cap_tissue	YFB_gill_tissue	0.001625	yes
YFB_cap_tissue	YFB_veil	0.002525	yes
YFB_gill_tissue	YFB_veil	0.463231	no
Initials	DIF_gill_tissue	0.008457	yes
Initials	YFB_stipe_center	0.253793	no
Initials	YFB_stipe_shell	0.133562	no
Initials	YFB_stipe_skin	0.771411	no
Initials	YFB_cap_skin	0.001140	yes
Initials	YFB_cap_tissue	0.030610	yes
Initials	YFB_gill_tissue	0.000613	yes
Initials	YFB_veil	0.007439	yes
Initials	Pileal_Stipeal_center	0.007782	yes
Initials	Pileal_Stipeal_shell	0.000613	yes
Initials	DIF_stipe_center	0.458055	no
Initials	DIF_stipe_shell	0.113653	no
Initials	DIF_stipe_skin	0.203278	no
Initials	DIF_cap_skin	0.002084	yes
Initials	DIF_cap_tissue	0.109462	no
Pileal_Stipeal_center	DIF_gill_tissue	0.991274	no
Pileal_Stipeal_center	YFB_stipe_center	0.001625	yes
Pileal_Stipeal_center	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.033906	yes
Pileal_Stipeal_center	YFB_cap_skin	0.595211	no
Pileal_Stipeal_center	YFB_cap_tissue	0.002525	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.429462	no
Pileal_Stipeal_center	YFB_veil	0.983572	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.221592	no
Pileal_Stipeal_center	DIF_stipe_center	0.001140	yes
Pileal_Stipeal_center	DIF_stipe_shell	0.001625	yes
Pileal_Stipeal_center	DIF_stipe_skin	0.416662	no
Pileal_Stipeal_center	DIF_cap_skin	0.770731	no
Pileal_Stipeal_center	DIF_cap_tissue	0.503774	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.236791	no
Pileal_Stipeal_shell	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.000613	yes
Pileal_Stipeal_shell	YFB_cap_skin	0.676327	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.854523	no
Pileal_Stipeal_shell	YFB_veil	0.258299	no
Pileal_Stipeal_shell	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.027451	yes
Pileal_Stipeal_shell	DIF_cap_skin	0.515837	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.025711	yes
DIF_stipe_center	DIF_gill_tissue	0.001140	yes
DIF_stipe_center	YFB_stipe_center	0.832782	no
DIF_stipe_center	YFB_stipe_shell	0.668305	no
DIF_stipe_center	YFB_stipe_skin	0.223034	no
DIF_stipe_center	YFB_cap_skin	0.000613	yes
DIF_stipe_center	YFB_cap_tissue	0.094323	no
DIF_stipe_center	YFB_gill_tissue	0.000613	yes
DIF_stipe_center	YFB_veil	0.000613	yes
DIF_stipe_center	DIF_stipe_shell	0.576559	no
DIF_stipe_center	DIF_stipe_skin	0.024444	yes
DIF_stipe_center	DIF_cap_skin	0.000613	yes
DIF_stipe_center	DIF_cap_tissue	0.012274	yes
DIF_stipe_shell	DIF_gill_tissue	0.001140	yes
DIF_stipe_shell	YFB_stipe_center	0.803530	no
DIF_stipe_shell	YFB_stipe_shell	0.932959	no
DIF_stipe_shell	YFB_stipe_skin	0.043983	yes
DIF_stipe_shell	YFB_cap_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_tissue	0.272049	no
DIF_stipe_shell	YFB_gill_tissue	0.000613	yes
DIF_stipe_shell	YFB_veil	0.001140	yes
DIF_stipe_shell	DIF_stipe_skin	0.006032	yes
DIF_stipe_shell	DIF_cap_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_tissue	0.005302	yes
DIF_stipe_skin	DIF_gill_tissue	0.401561	no
DIF_stipe_skin	YFB_stipe_center	0.011659	yes
DIF_stipe_skin	YFB_stipe_shell	0.003365	yes
DIF_stipe_skin	YFB_stipe_skin	0.453226	no
DIF_stipe_skin	YFB_cap_skin	0.109313	no
DIF_stipe_skin	YFB_cap_tissue	0.006032	yes
DIF_stipe_skin	YFB_gill_tissue	0.061277	no
DIF_stipe_skin	YFB_veil	0.398759	no
DIF_stipe_skin	DIF_cap_skin	0.190617	no
DIF_stipe_skin	DIF_cap_tissue	0.926693	no
DIF_cap_skin	DIF_gill_tissue	0.779633	no
DIF_cap_skin	YFB_stipe_center	0.001140	yes
DIF_cap_skin	YFB_stipe_shell	0.000613	yes
DIF_cap_skin	YFB_stipe_skin	0.007439	yes
DIF_cap_skin	YFB_cap_skin	0.893347	no
DIF_cap_skin	YFB_cap_tissue	0.002084	yes
DIF_cap_skin	YFB_gill_tissue	0.745153	no
DIF_cap_skin	YFB_veil	0.797176	no
DIF_cap_skin	DIF_cap_tissue	0.228037	no
DIF_cap_tissue	DIF_gill_tissue	0.483886	no
DIF_cap_tissue	YFB_stipe_center	0.007439	yes
DIF_cap_tissue	YFB_stipe_shell	0.001140	yes
DIF_cap_tissue	YFB_stipe_skin	0.305970	no
DIF_cap_tissue	YFB_cap_skin	0.127489	no
DIF_cap_tissue	YFB_cap_tissue	0.005302	yes
DIF_cap_tissue	YFB_gill_tissue	0.066767	no
DIF_cap_tissue	YFB_veil	0.479263	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|113350 MLSSKLFSLLSFAAAAVAQGFPSGQFFIANVESELVLAVEGGVGGSSPGAFVVLAEQNASDDAQIWSYAEGRGFL TNNASHLVLEVPRTDGQVNYGTRLELAEPRNEANDDLTQLWDYDGDAQHLFTLADTNACLAANSSVQYAIVDVCD SQDNDSQQWRFVSV*
Coding	>AgabiH97|113350 ATGCTCTCCTCCAAATTATTCTCCCTTCTGAGTTTCGCTGCAGCTGCTGTTGCTCAAGGATTCCCTAGTGGGCAG TTCTTTATCGCTAACGTCGAGTCTGAACTGGTCTTGGCCGTCGAAGGCGGAGTTGGGGGTTCAAGTCCTGGTGCA TTCGTTGTCCTCGCAGAACAAAACGCAAGCGATGATGCACAGATCTGGTCATACGCTGAGGGCCGTGGATTCTTG ACGAACAATGCCTCTCACCTTGTTCTTGAAGTGCCCAGAACAGATGGCCAGGTCAATTATGGAACCAGGCTGGAG TTAGCAGAGCCCAGGAATGAAGCCAATGACGATTTGACTCAGTTGTGGGACTATGATGGAGACGCACAACATTTG TTCACACTAGCCGATACTAATGCATGCCTTGCTGCGAATAGCTCAGTGCAGTATGCCATAGTTGACGTTTGTGAC TCTCAAGATAACGATTCTCAACAGTGGAGATTCGTCAGTGTCTGA
Transcript	>AgabiH97|113350 ATGCTCTCCTCCAAATTATTCTCCCTTCTGAGTTTCGCTGCAGCTGCTGTTGCTCAAGGATTCCCTAGTGGGCAG TTCTTTATCGCTAACGTCGAGTCTGAACTGGTCTTGGCCGTCGAAGGCGGAGTTGGGGGTTCAAGTCCTGGTGCA TTCGTTGTCCTCGCAGAACAAAACGCAAGCGATGATGCACAGATCTGGTCATACGCTGAGGGCCGTGGATTCTTG ACGAACAATGCCTCTCACCTTGTTCTTGAAGTGCCCAGAACAGATGGCCAGGTCAATTATGGAACCAGGCTGGAG TTAGCAGAGCCCAGGAATGAAGCCAATGACGATTTGACTCAGTTGTGGGACTATGATGGAGACGCACAACATTTG TTCACACTAGCCGATACTAATGCATGCCTTGCTGCGAATAGCTCAGTGCAGTATGCCATAGTTGACGTTTGTGAC TCTCAAGATAACGATTCTCAACAGTGGAGATTCGTCAGTGTCTGA
Gene	>AgabiH97|113350 ATGCTCTCCTCCAAATTATTCTCCCTTCTGAGTTTCGCTGCAGCTGCTGTTGCTCAAGGATTCCCTAGTGGGCAG TTCTTTATCGCTAACGTCGAGTCTGAACTGGTCTTGGCCGTCGAAGGCGGAGTTGGGGGTTCAAGTGTAGGTGCC GAATCTGTTCAACCTCTTGTTCGATCATTGACTTATTGTTTAGCCTGGTGCATTCGTTGTCCTCGCAGAACAAAA CGCAAGCGATGATGCACAGATCTGGTCATACGCTGAGGGCCGTGGATTCTTGACGAACAATGCCTCTCACCTTGT TCTTGAAGTGCCCAGTGAGTTGCAGCTGCGTACTTATTTGTCCGTTTGGGTGGCGTGAACTTTCTTCTTTTAATA GGAACAGATGGCCAGGTCAATTATGGAACCAGGCTGGAGTTAGCAGAGCCCAGGAATGAAGCCAATGACGATTTG ACTCAGTTGTGGGACTATGATGGAGACGCACAACATTTGTTCACACTAGCCGATACTAATGCATGCCTTGCTGCG AATAGCTCAGTGCAGTATGCCATAGTTGACGTTTGTGACTCTCAAGATAACGATTCTCAACAGTGGAGATTCGTC AGTGTCTGA