Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|112640
Gene name
Location	scaffold_8:1713177..1716345
Strand	-
Gene length (bp)	3168
Transcript length (bp)	2505
Coding sequence length (bp)	2505
Protein length (aa)	835

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF10367	Vps39_2	Vacuolar sorting protein 39 domain 2	1.1E-08	643	706
PF10366	Vps39_1	Vacuolar sorting protein 39 domain 1	7.4E-06	198	295

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|Q8WUH2|TGFA1_HUMAN	Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1	9	379	2.0E-11
sp|A7MB11|TGFA1_BOVIN	Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1	9	380	5.0E-10
sp|Q3UR70|TGFA1_MOUSE	Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus GN=Tgfbrap1 PE=1 SV=1	9	380	2.0E-09
sp|A4IG72|TGFA1_DANRE	Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1	9	343	1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|112640 MHAFPRSSLLVLQNNAVSALIPTSLIDEVDVLLDSNHINDAALLVDQRRRQLESNLTVDPDEAEELEYVYQTIGF KCFSQTLFEDAGRNLFNGALDPRILISYYPDLYGSLFSSTGQIDVYSGVAERMPSDKNVDELIRNYSPHLEPDIQ DAPAAVELRQVLGNAARDMLLVFLEKSRRRARVERRKEDVRSDVVRVVDTVLAKLYALHDRIQELRALLTDSNDV VLSEIEPSLRKLGFFSLLADLYQKQGQEDKLLDLYSACAEGAYSNTDIEDPLQNIVTLLESKKDKDRKQQVKWGL WILQRGDLEHGMKLLIPPDTPKRRERDRDREDDLSLLEQITSANQAAGKRFLEYLVVTKRSTSSELHTRLALSCV DELLQCLEDETTLKLWRAKASSYASPRPPSSPLLSSPSQSQPQSQPPSFHLQQLPSPPLLARHQTSQPQPFLAYF ASTTPNSPSKRTRLKTIMMLSGSGLYDANVVKDRIRSARERDLVENYESGKGKGKTIDVLALESAILDGKLGHHA LALSTLVHDLRDSVSAETYCTLGGEVVPAKLALATAESTAPSASSSVELALKEWYLGLFEPLQVPKSKRGGVGAM GGMESAMVRQRSVKDEVKTALLTDLIGVYSRDGALGVERTKRLLDSQGVNLDVVDIVTLVPDDWPLSSLNTFLAR HFRRTLHKMHENTIQKNLSAGQNLAVRERSYPILRDAGYLIEEPDSEDELGGVVDEKAAYVQVEEVVEKMINRDD VVNEKTPSPDYQPQRHVLQEQQSAEEVEESVGAVHSDSRDEAPGQGRVEERSMLGLILDEGVSGERDGDSVETGD EEEEGRSIR*
Coding	>AgabiH97|112640 ATGCATGCGTTTCCGCGGTCATCCCTGCTCGTCCTCCAGAACAATGCTGTCTCTGCGCTCATCCCCACTTCCCTC ATCGACGAGGTAGACGTCCTCCTCGACAGCAACCACATCAATGATGCCGCGCTCCTCGTCGACCAGCGCCGACGA CAACTCGAAAGCAATTTAACCGTGGACCCGGATGAGGCGGAGGAACTCGAATATGTCTACCAGACCATTGGCTTC AAGTGTTTCTCCCAGACCCTCTTTGAAGATGCGGGCAGGAACTTATTTAACGGCGCTCTAGACCCTCGCATACTC ATCAGCTATTACCCGGATTTATATGGCTCCCTGTTCTCGTCTACTGGCCAGATAGATGTTTACTCTGGTGTCGCC GAACGTATGCCTTCCGATAAAAATGTAGACGAGTTAATCAGGAACTACTCTCCGCACTTGGAACCCGATATACAG GATGCGCCAGCAGCTGTAGAACTCAGACAAGTATTAGGAAATGCTGCGAGAGATATGCTGTTGGTGTTCTTGGAG AAATCGAGGAGGCGCGCGAGAGTGGAAAGGAGGAAAGAAGACGTGAGGAGTGATGTTGTTCGTGTTGTAGATACC GTTTTGGCAAAACTTTATGCTCTTCACGACAGGATCCAAGAGCTCCGAGCGCTTCTGACCGACTCAAACGACGTT GTCTTATCGGAAATCGAGCCTTCTTTGCGAAAGCTCGGATTTTTTTCCCTGTTAGCCGACCTATACCAGAAACAA GGGCAAGAAGACAAACTGCTCGACCTATATTCCGCGTGCGCCGAAGGCGCATACTCAAACACTGACATCGAAGAC CCACTACAAAATATTGTAACCCTTTTAGAGTCGAAAAAGGACAAAGACCGCAAACAACAAGTCAAATGGGGCCTT TGGATACTCCAAAGAGGTGATTTAGAACATGGAATGAAGCTTCTTATTCCACCAGATACGCCCAAACGACGAGAG AGAGATCGTGATAGGGAAGATGATCTTTCATTACTCGAGCAGATTACTAGTGCGAACCAGGCCGCTGGTAAGCGC TTCCTTGAGTATCTTGTCGTGACAAAGCGAAGCACGTCTTCAGAACTGCATACACGATTAGCACTCTCATGCGTT GATGAGCTTCTACAATGTCTTGAGGATGAAACAACGTTGAAACTCTGGCGTGCCAAAGCCTCGTCATACGCTTCA CCTCGACCACCTTCATCTCCTCTCTTATCTTCACCCAGCCAATCTCAACCTCAATCTCAGCCGCCCTCTTTTCAT CTACAACAACTCCCATCTCCCCCTCTCCTCGCCCGCCACCAAACATCTCAACCACAACCTTTCCTAGCATATTTT GCTTCAACAACGCCAAACTCGCCATCCAAACGTACACGGCTAAAAACTATAATGATGCTTTCTGGAAGCGGGTTG TATGATGCGAATGTTGTCAAAGACCGAATACGCTCTGCGCGTGAGCGTGATTTGGTTGAAAATTATGAGAGTGGG AAAGGCAAGGGGAAGACGATTGATGTTTTGGCACTTGAATCTGCTATTTTGGACGGGAAGCTAGGGCATCATGCA TTGGCGTTATCAACACTGGTTCACGACCTCAGAGATTCAGTATCTGCAGAAACATACTGTACACTCGGTGGTGAA GTCGTGCCGGCAAAACTTGCTTTAGCTACTGCTGAAAGCACAGCTCCATCAGCATCATCATCGGTAGAGTTGGCA TTGAAAGAATGGTATCTGGGGTTGTTTGAACCACTTCAAGTTCCGAAATCTAAACGTGGTGGTGTTGGTGCGATG GGTGGAATGGAATCTGCTATGGTTAGGCAGAGAAGTGTGAAAGATGAGGTGAAGACGGCTTTGTTGACTGATTTG ATAGGTGTTTATTCGCGTGATGGAGCGCTTGGTGTGGAACGTACAAAGCGATTATTGGATTCTCAGGGTGTTAAT CTAGATGTCGTCGACATCGTGACGTTAGTACCAGATGACTGGCCCCTCTCGTCACTCAACACATTCCTCGCAAGA CATTTCCGAAGAACGTTACACAAAATGCATGAGAATACAATCCAAAAAAACTTGAGCGCCGGACAAAATTTGGCT GTTCGAGAACGTTCATATCCAATATTACGAGATGCCGGATATCTCATTGAAGAACCTGATTCTGAAGATGAGTTG GGTGGAGTGGTGGATGAGAAAGCGGCGTATGTGCAAGTTGAGGAAGTGGTGGAGAAAATGATCAATCGGGATGAT GTTGTTAATGAGAAAACACCGTCTCCGGATTATCAACCTCAGCGGCATGTGTTACAGGAACAACAGAGTGCGGAG GAAGTGGAGGAATCTGTGGGTGCGGTGCATAGTGATAGTCGCGATGAGGCGCCAGGGCAAGGACGGGTGGAGGAG AGGAGTATGTTGGGGTTGATTTTGGATGAGGGCGTGAGTGGGGAGAGGGATGGAGATAGCGTGGAAACTGGAGAC GAAGAAGAGGAAGGGAGGAGTATCCGATAG
Transcript	>AgabiH97|112640 ATGCATGCGTTTCCGCGGTCATCCCTGCTCGTCCTCCAGAACAATGCTGTCTCTGCGCTCATCCCCACTTCCCTC ATCGACGAGGTAGACGTCCTCCTCGACAGCAACCACATCAATGATGCCGCGCTCCTCGTCGACCAGCGCCGACGA CAACTCGAAAGCAATTTAACCGTGGACCCGGATGAGGCGGAGGAACTCGAATATGTCTACCAGACCATTGGCTTC AAGTGTTTCTCCCAGACCCTCTTTGAAGATGCGGGCAGGAACTTATTTAACGGCGCTCTAGACCCTCGCATACTC ATCAGCTATTACCCGGATTTATATGGCTCCCTGTTCTCGTCTACTGGCCAGATAGATGTTTACTCTGGTGTCGCC GAACGTATGCCTTCCGATAAAAATGTAGACGAGTTAATCAGGAACTACTCTCCGCACTTGGAACCCGATATACAG GATGCGCCAGCAGCTGTAGAACTCAGACAAGTATTAGGAAATGCTGCGAGAGATATGCTGTTGGTGTTCTTGGAG AAATCGAGGAGGCGCGCGAGAGTGGAAAGGAGGAAAGAAGACGTGAGGAGTGATGTTGTTCGTGTTGTAGATACC GTTTTGGCAAAACTTTATGCTCTTCACGACAGGATCCAAGAGCTCCGAGCGCTTCTGACCGACTCAAACGACGTT GTCTTATCGGAAATCGAGCCTTCTTTGCGAAAGCTCGGATTTTTTTCCCTGTTAGCCGACCTATACCAGAAACAA GGGCAAGAAGACAAACTGCTCGACCTATATTCCGCGTGCGCCGAAGGCGCATACTCAAACACTGACATCGAAGAC CCACTACAAAATATTGTAACCCTTTTAGAGTCGAAAAAGGACAAAGACCGCAAACAACAAGTCAAATGGGGCCTT TGGATACTCCAAAGAGGTGATTTAGAACATGGAATGAAGCTTCTTATTCCACCAGATACGCCCAAACGACGAGAG AGAGATCGTGATAGGGAAGATGATCTTTCATTACTCGAGCAGATTACTAGTGCGAACCAGGCCGCTGGTAAGCGC TTCCTTGAGTATCTTGTCGTGACAAAGCGAAGCACGTCTTCAGAACTGCATACACGATTAGCACTCTCATGCGTT GATGAGCTTCTACAATGTCTTGAGGATGAAACAACGTTGAAACTCTGGCGTGCCAAAGCCTCGTCATACGCTTCA CCTCGACCACCTTCATCTCCTCTCTTATCTTCACCCAGCCAATCTCAACCTCAATCTCAGCCGCCCTCTTTTCAT CTACAACAACTCCCATCTCCCCCTCTCCTCGCCCGCCACCAAACATCTCAACCACAACCTTTCCTAGCATATTTT GCTTCAACAACGCCAAACTCGCCATCCAAACGTACACGGCTAAAAACTATAATGATGCTTTCTGGAAGCGGGTTG TATGATGCGAATGTTGTCAAAGACCGAATACGCTCTGCGCGTGAGCGTGATTTGGTTGAAAATTATGAGAGTGGG AAAGGCAAGGGGAAGACGATTGATGTTTTGGCACTTGAATCTGCTATTTTGGACGGGAAGCTAGGGCATCATGCA TTGGCGTTATCAACACTGGTTCACGACCTCAGAGATTCAGTATCTGCAGAAACATACTGTACACTCGGTGGTGAA GTCGTGCCGGCAAAACTTGCTTTAGCTACTGCTGAAAGCACAGCTCCATCAGCATCATCATCGGTAGAGTTGGCA TTGAAAGAATGGTATCTGGGGTTGTTTGAACCACTTCAAGTTCCGAAATCTAAACGTGGTGGTGTTGGTGCGATG GGTGGAATGGAATCTGCTATGGTTAGGCAGAGAAGTGTGAAAGATGAGGTGAAGACGGCTTTGTTGACTGATTTG ATAGGTGTTTATTCGCGTGATGGAGCGCTTGGTGTGGAACGTACAAAGCGATTATTGGATTCTCAGGGTGTTAAT CTAGATGTCGTCGACATCGTGACGTTAGTACCAGATGACTGGCCCCTCTCGTCACTCAACACATTCCTCGCAAGA CATTTCCGAAGAACGTTACACAAAATGCATGAGAATACAATCCAAAAAAACTTGAGCGCCGGACAAAATTTGGCT GTTCGAGAACGTTCATATCCAATATTACGAGATGCCGGATATCTCATTGAAGAACCTGATTCTGAAGATGAGTTG GGTGGAGTGGTGGATGAGAAAGCGGCGTATGTGCAAGTTGAGGAAGTGGTGGAGAAAATGATCAATCGGGATGAT GTTGTTAATGAGAAAACACCGTCTCCGGATTATCAACCTCAGCGGCATGTGTTACAGGAACAACAGAGTGCGGAG GAAGTGGAGGAATCTGTGGGTGCGGTGCATAGTGATAGTCGCGATGAGGCGCCAGGGCAAGGACGGGTGGAGGAG AGGAGTATGTTGGGGTTGATTTTGGATGAGGGCGTGAGTGGGGAGAGGGATGGAGATAGCGTGGAAACTGGAGAC GAAGAAGAGGAAGGGAGGAGTATCCGATAG
Gene	>AgabiH97|112640 ATGCATGCGTTTCCGCGGTCATCCCTGCTCGTCCTCCAGAACAATGCTGTCTCTGCGCTCATCCCCACTTCCCTC ATCGACGAGGTAGACGTCCTCCTCGACAGCAACCACATCAATGATGCCGCGCTCCTCGTCGACCAGCGCCGACGA CAACTCGAAAGCAATTTAACCGTGGACCCGGATGAGGTATGCGCGTTATGTGCATCCGCAGTCGGCTATATATAA TATATAATGTTTCTGGCTTGTAGGCGGAGGAACTCGAATATGTCTACCAGACCATTGGCTTCAAGTGTTTCTCCC AGACCCTCTTTGAAGATGCGGGCAGGAACTTATTTAACGGCGCTCTAGACCCTCGCATACTCATCAGCTATTACC CGGATTTATATGGCTCCCTGTTCTCGTCTACTGGCCAGATAGATGTTTACTCTGGTGTCGCCGAACGTATGCCTT CCGATAAAAATGTAGACGAGTTAAGTAAGTGCCCCTTCCTTGACACGTCCCCATCCCCACTCCCACCCTATATTT CTCCAACGTTCCCTCCGGCCTCGCGACAAATCAACACTCATCGACTTTATTCTTTTTTACCGCATAATTTGTTCC ACACAATCTGGAACTGACAGTCGCAATGAACCTAGTCAGGAACTACTCTCCGCACTTGGAACCCGATATACAGGA TGCGCCAGCAGCTGTAGAACTCAGACAAGTATTAGGAAATGCTGCGAGAGATATGCTGTTGGTGTTCTTGGAGAA ATCGAGGAGGCGCGCGAGAGTGGAAAGGAGGAAAGAAGACGTGAGGAGTGATGTTGTTCGTGTAAGCATCTTCCT TTCAGTATTTACTTCTCGAAGACGTCCTGATCGTGTCATCAAGGTTGTAGATACCGTTTTGGCAAAACTTTATGC TCTTCACGACAGGATCCAAGAGCTCCGAGCGCTTCTGACCGACTCAAACGACGTTGTCTTATCGGAAATCGAGCC TTCTTTGCGAAAGCTCGGATTTTTTTCCCTGTTAGCCGACCTATACCAGAAACAAGGGCAAGAAGACAAACTGCT CGACCTATATTCCGCGTGCGCCGAAGGCGCATACTCAAACACTGACATCGAAGACCCACTACAAAATATTGTAAC CCTTTTAGAGTCGAAAAAGGACAAAGACCGCAAACAACAAGTCAAATGGGGCCTTTGGATACTCCAAAGAGGTGA TTTAGAACATGGAATGAAGGTGTGTAGTTCCTTGGTACTTTGGAATACAATCTGAAAAGATGCAGCTTCTTATTC CACCAGATACGCCCAAACGACGAGAGAGAGATCGTGATAGGGAAGATGATCTTTCATTACTCGAGCAGATTACTA GTGCGAACCAGGCCGCTGGTAAGCGCTTCCTTGAGTATCTTGTCGTGACAAAGCGAAGCACGGTATGTCTTCATG ATATTTCCCTTGGAATTAAACTCAAATACACATATAGTCTTCAGAACTGCATACACGATTAGCACTCTCATGCGT TGATGAGCTTCTACAATGTCTTGAGGATGAAACAACGTTGAAACTCTGGCGTGCCAAAGGTACGTATGAAAAGTT ATGTCCGCTCATCGATTTCTCAAAATAGGGCATAGCCTCGTCATACGCTTCACCTCGACCACCTTCATCTCCTCT CTTATCTTCACCCAGCCAATCTCAACCTCAATCTCAGCCGCCCTCTTTTCATCTACAACAACTCCCATCTCCCCC TCTCCTCGCCCGCCACCAAACATCTCAACCACAACCTTTCCTAGCATATTTTGCTTCAACAACGCCAAACTCGCC ATCCAAACGTACACGGCTAAAAACTATAATGATGCTTTCTGGAAGCGGGTTGTATGATGCGAATGTTGTCAAAGA CCGAATACGCTCTGCGCGTGAGCGTGATTTGGTTGAAAATTATGAGAGTGGGAAAGGCAAGGGGAAGACGATTGA TGTTTTGGCACTTGAATCTGCTATTTTGGACGGGAAGGTACCTTTTTTCCTGAAGACTCAATGTCAATGGTTTTT ATCTGACACTTTCTTTCTAGCTAGGGCATCATGCATTGGCGTTATCAACACTGGTTCACGACCTCAGAGATTCAG TATCTGCAGAAACATACTGTACACTCGGTGGTGAAGTCGTGCCGGCAAAACTTGCTTTAGCTACTGCTGAAAGCA CAGCTCCATCAGCATCATCATCGGTAGAGTTGGCATTGAAAGAATGGTATCTGGGGTTGTTTGAACCACTTCAAG TTCCGAAATCTAAACGTGGTGGTGTTGGTGCGATGGGTGGAATGGAATCTGCTATGGTTAGGCAGAGAAGTGTGA AAGATGAGGTGAAGACGGCTTTGTTGACTGATTTGATAGGTGTTTATTCGCGTGATGGGTACGTTCTTTTGCGCT TTATGCCCTATTTCTTCTAACAGTTATGATAGAGCGCTTGGTGTGGAACGTACAAAGCGATTATTGGATTCTCAG GGTGTTAATCTAGATGTCGTCGACGTGAGTTTTCTCTTTTCATCCCAACCTAACAGGTCTGATATATATATGCGC GTGTAGATCGTGACGTTAGTACCAGATGACTGGCCCCTCTCGTCACTCAACACATTCCTCGCAAGACATTTCCGA AGAACGTTACACAAAATGCATGAGAATACAATCCAAAAAAACTTGAGCGCCGGACAAAATTTGGCTGTACGTCCT TAATCTCTCTATAATAAACAACCCGTTTACTGACAGATATCCTTCTTTTATTTCTTTTGACAGGTTCGAGAACGT TCATATCCAATATTACGAGATGCCGGATATCTCATTGAAGAACCTGATTCTGAAGATGAGTTGGGTGGAGTGGTG GATGAGAAAGCGGCGTATGTGCAAGTTGAGGAAGTGGTGGAGAAAATGATCAATCGGGATGATGTTGTTAATGAG AAAACACCGTCTCCGGATTATCAACCTCAGCGGCATGTGTTACAGGAACAACAGAGTGCGGAGGAAGTGGAGGAA TCTGTGGGTGCGGTGCATAGTGATAGTCGCGATGAGGCGCCAGGGCAAGGACGGGTGGAGGAGAGGAGTATGTTG GGGTTGATTTTGGATGAGGGCGTGAGTGGGGAGAGGGATGGAGATAGCGTGGAAACTGGAGACGAAGAAGAGGAA GGGAGGAGTATCCGATAG