Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|111910
Gene name
Locationscaffold_8:1504252..1505293
Strand+
Gene length (bp)1041
Transcript length (bp)774
Coding sequence length (bp)774
Protein length (aa) 258

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01105 EMP24_GP25L emp24/gp25L/p24 family/GOLD 4.3E-31 24 202

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q4P958|TMEDA_USTMA Endoplasmic reticulum vesicle protein 25 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERV25 PE=3 SV=1 21 205 5.0E-68
sp|P0CN72|TMEDA_CRYNJ Endoplasmic reticulum vesicle protein 25 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ERV25 PE=3 SV=1 5 189 1.0E-58
sp|P0CN73|TMEDA_CRYNB Endoplasmic reticulum vesicle protein 25 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ERV25 PE=3 SV=1 5 189 2.0E-56
sp|Q9HEK4|TMEDA_NEUCR Endoplasmic reticulum vesicle protein 25 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erv-1 PE=3 SV=3 23 199 1.0E-31
sp|Q5B5L5|TMEDA_EMENI Endoplasmic reticulum vesicle protein 25 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=erv25 PE=3 SV=1 6 200 8.0E-31
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Swissprot ID Swissprot Description Start End E-value
sp|Q4P958|TMEDA_USTMA Endoplasmic reticulum vesicle protein 25 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERV25 PE=3 SV=1 21 205 5.0E-68
sp|P0CN72|TMEDA_CRYNJ Endoplasmic reticulum vesicle protein 25 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ERV25 PE=3 SV=1 5 189 1.0E-58
sp|P0CN73|TMEDA_CRYNB Endoplasmic reticulum vesicle protein 25 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ERV25 PE=3 SV=1 5 189 2.0E-56
sp|Q9HEK4|TMEDA_NEUCR Endoplasmic reticulum vesicle protein 25 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erv-1 PE=3 SV=3 23 199 1.0E-31
sp|Q5B5L5|TMEDA_EMENI Endoplasmic reticulum vesicle protein 25 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=erv25 PE=3 SV=1 6 200 8.0E-31
sp|Q5A302|TMEDA_CANAL Endoplasmic reticulum vesicle protein 25 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ERV25 PE=3 SV=1 1 200 5.0E-30
sp|Q6BTC2|TMEDA_DEBHA Endoplasmic reticulum vesicle protein 25 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ERV25 PE=3 SV=2 3 200 2.0E-27
sp|Q4HY20|TMEDA_GIBZE Endoplasmic reticulum vesicle protein 25 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=ERV25 PE=3 SV=1 3 216 3.0E-27
sp|Q4WQL0|TMEDA_ASPFU Endoplasmic reticulum vesicle protein 25 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=erv25 PE=3 SV=1 22 200 5.0E-27
sp|Q6CWW7|TMEDA_KLULA Endoplasmic reticulum vesicle protein 25 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ERV25 PE=3 SV=1 1 199 6.0E-27
sp|P54837|TMEDA_YEAST Endoplasmic reticulum vesicle protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV25 PE=1 SV=1 1 201 2.0E-25
sp|Q6FRZ3|TMEDA_CANGA Endoplasmic reticulum vesicle protein 25 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERV25 PE=3 SV=2 21 199 2.0E-22
sp|O13946|TMEDA_SCHPO Endoplasmic reticulum vesicle protein 25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv25 PE=3 SV=1 1 201 2.0E-21
sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=1 SV=1 7 205 3.0E-20
sp|Q90515|TMEDA_TAKRU Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1 5 205 2.0E-19
sp|Q63584|TMEDA_RAT Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2 16 205 2.0E-19
sp|Q28735|TMEDA_RABIT Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1 16 205 1.0E-18
sp|Q5E971|TMEDA_BOVIN Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1 16 205 1.0E-18
sp|Q759T8|TMEDA_ASHGO Endoplasmic reticulum vesicle protein 25 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERV25 PE=3 SV=1 9 216 5.0E-18
sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1 16 205 1.0E-17
sp|P49755|TMEDA_HUMAN Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2 20 205 8.0E-17
sp|Q5RE32|TMEDA_PONAB Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1 20 205 3.0E-16
sp|Q99KF1|TMED9_MOUSE Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=1 SV=2 33 216 4.0E-14
sp|Q5I0E7|TMED9_RAT Transmembrane emp24 domain-containing protein 9 OS=Rattus norvegicus GN=Tmed9 PE=1 SV=1 33 216 5.0E-14
sp|Q3T133|TMED9_BOVIN Transmembrane emp24 domain-containing protein 9 OS=Bos taurus GN=TMED9 PE=1 SV=1 33 216 5.0E-14
sp|Q9BVK6|TMED9_HUMAN Transmembrane emp24 domain-containing protein 9 OS=Homo sapiens GN=TMED9 PE=1 SV=2 33 216 5.0E-14
sp|Q6C503|TMEDA_YARLI Endoplasmic reticulum vesicle protein 25 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ERV25 PE=3 SV=1 5 201 7.0E-14
sp|Q9I7K5|TMEDE_DROME Transmembrane emp24 domain-containing protein eca OS=Drosophila melanogaster GN=eca PE=2 SV=2 9 200 5.0E-13
sp|B4LYB8|TMEDE_DROVI Transmembrane emp24 domain-containing protein eca OS=Drosophila virilis GN=eca PE=3 SV=1 9 200 8.0E-13
sp|B4QWH9|TMEDE_DROSI Transmembrane emp24 domain-containing protein eca OS=Drosophila simulans GN=eca PE=3 SV=1 9 200 8.0E-13
sp|B4PVC6|TMEDE_DROYA Transmembrane emp24 domain-containing protein eca OS=Drosophila yakuba GN=eca PE=3 SV=1 9 200 8.0E-13
sp|B4JG34|TMEDE_DROGR Transmembrane emp24 domain-containing protein eca OS=Drosophila grimshawi GN=eca PE=3 SV=1 61 200 9.0E-13
sp|B3MTS8|TMEDE_DROAN Transmembrane emp24 domain-containing protein eca OS=Drosophila ananassae GN=eca PE=3 SV=1 61 207 1.0E-12
sp|B4GMC3|TMEDE_DROPE Transmembrane emp24 domain-containing protein eca OS=Drosophila persimilis GN=eca PE=3 SV=1 61 207 1.0E-12
sp|B4KB41|TMEDE_DROMO Transmembrane emp24 domain-containing protein eca OS=Drosophila mojavensis GN=eca PE=3 SV=1 9 200 1.0E-12
sp|B3NZM5|TMEDE_DROER Transmembrane emp24 domain-containing protein eca OS=Drosophila erecta GN=eca PE=3 SV=1 9 200 1.0E-12
sp|B4HJV5|TMEDE_DROSE Transmembrane emp24 domain-containing protein eca OS=Drosophila sechellia GN=eca PE=3 SV=1 9 200 1.0E-12
sp|B4NKL0|TMEDE_DROWI Transmembrane emp24 domain-containing protein eca OS=Drosophila willistoni GN=eca PE=3 SV=1 61 200 2.0E-12
sp|Q295B2|TMEDE_DROPS Transmembrane emp24 domain-containing protein eca OS=Drosophila pseudoobscura pseudoobscura GN=eca PE=3 SV=1 61 200 2.0E-12
sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1 114 203 2.0E-11
sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=CYB PE=1 SV=1 31 201 7.0E-11
sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1 46 200 6.0E-10
sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1 3 197 2.0E-08
sp|P32803|EMP24_YEAST Endosomal protein P24B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP24 PE=1 SV=1 90 205 6.0E-07
sp|B4NIY1|TMEDA_DROWI Transmembrane emp24 domain-containing protein bai OS=Drosophila willistoni GN=bai PE=3 SV=1 117 200 4.0E-06
sp|B4JYU5|TMEDA_DROGR Transmembrane emp24 domain-containing protein bai OS=Drosophila grimshawi GN=bai PE=3 SV=2 128 200 6.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 191 213 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|111910
MYSLLLALFSLVALVPQQALGIKFSLPAYRYPSSKCIWNAAHPDTLVIVTANVVIGQNQRVDIEIVDSSPQKNVY
LSKRGIKAETRLAITTHGEGEVGVCLKNYLEGDVSSNVASKLASVVDLDVDIGADAVDYNAIANQESLSSLETEM
RKLEGVVKEIVDEMEYLKKRETRFTSTNTSTNDRVQNFAWFSIFSLAALVVSVIFCFPLHYIISNFGGGLLPRLS
SSTTTTATQTSPRHCAPRFNATTNSAKNRVQA*
Coding >AgabiH97|111910
ATGTATTCTCTCCTCCTCGCGCTTTTTTCCCTTGTGGCCCTTGTTCCCCAGCAAGCTCTGGGCATAAAATTTTCT
TTACCGGCGTATCGATACCCTTCGTCAAAGTGCATATGGAATGCAGCGCATCCGGACACGCTGGTAATCGTGACG
GCAAACGTGGTTATTGGCCAGAACCAGAGGGTGGATATTGAAATCGTGGATTCGTCACCGCAGAAGAATGTCTAT
CTGAGCAAGCGGGGGATCAAAGCTGAGACGAGGTTGGCTATTACGACGCATGGAGAGGGCGAGGTTGGGGTTTGT
TTAAAGAATTATTTGGAGGGTGATGTGTCGTCGAATGTTGCTTCCAAGCTGGCGAGCGTCGTGGATTTGGACGTG
GATATTGGCGCTGATGCTGTCGACTACAATGCCATTGCGAACCAGGAGTCGCTGTCGAGCCTCGAAACCGAGATG
CGGAAGCTGGAAGGCGTGGTGAAGGAGATTGTGGACGAGATGGAGTACCTCAAGAAACGAGAGACTCGCTTTACC
TCCACCAACACCTCCACAAACGACCGTGTGCAAAACTTTGCCTGGTTCTCTATTTTCTCTCTTGCCGCGCTCGTT
GTTAGTGTTATTTTTTGTTTTCCATTACATTACATAATCTCCAACTTTGGCGGTGGTCTGTTGCCCCGTCTTTCT
TCCTCCACAACCACAACCGCCACGCAAACCAGTCCTCGTCACTGCGCTCCAAGGTTCAACGCTACCACTAACAGC
GCCAAAAACAGAGTACAGGCCTAA
Transcript >AgabiH97|111910
ATGTATTCTCTCCTCCTCGCGCTTTTTTCCCTTGTGGCCCTTGTTCCCCAGCAAGCTCTGGGCATAAAATTTTCT
TTACCGGCGTATCGATACCCTTCGTCAAAGTGCATATGGAATGCAGCGCATCCGGACACGCTGGTAATCGTGACG
GCAAACGTGGTTATTGGCCAGAACCAGAGGGTGGATATTGAAATCGTGGATTCGTCACCGCAGAAGAATGTCTAT
CTGAGCAAGCGGGGGATCAAAGCTGAGACGAGGTTGGCTATTACGACGCATGGAGAGGGCGAGGTTGGGGTTTGT
TTAAAGAATTATTTGGAGGGTGATGTGTCGTCGAATGTTGCTTCCAAGCTGGCGAGCGTCGTGGATTTGGACGTG
GATATTGGCGCTGATGCTGTCGACTACAATGCCATTGCGAACCAGGAGTCGCTGTCGAGCCTCGAAACCGAGATG
CGGAAGCTGGAAGGCGTGGTGAAGGAGATTGTGGACGAGATGGAGTACCTCAAGAAACGAGAGACTCGCTTTACC
TCCACCAACACCTCCACAAACGACCGTGTGCAAAACTTTGCCTGGTTCTCTATTTTCTCTCTTGCCGCGCTCGTT
GTTAGTGTTATTTTTTGTTTTCCATTACATTACATAATCTCCAACTTTGGCGGTGGTCTGTTGCCCCGTCTTTCT
TCCTCCACAACCACAACCGCCACGCAAACCAGTCCTCGTCACTGCGCTCCAAGGTTCAACGCTACCACTAACAGC
GCCAAAAACAGAGTACAGGCCTAA
Gene >AgabiH97|111910
ATGTATTCTCTCCTCCTCGCGCTTTTTTCCCTTGTGGCCCTTGTTCCCCAGCAAGCTCTGGGCATAAAATTTTCT
TTACCGGCGTATCGATACCCTTCGTCAAAGTGCATATGGAATGCAGCGCATCCGGACACGCTGGTAATCGTGACG
GCAAACGTGGTTATTGGCCAGAACCAGAGGGTGGATATTGAAATCGTGGATTCGTCACCGCAGAAGAATGTCTAT
CTGAGCAAGCGGGGGATCAAAGCTGAGACGAGGTTGGCTATTACGACGCATGGAGAGGGCGAGGTTGGGGTTTGT
TTAAAGAATTATTTGGAGGGTGGTGAGTCGCCTCGAGGATTTCAAAGTAAATCATGCTGAGCGTCTATTGTAGAT
GTGTCGTCGAATGTTGCTTCCAAGCTGGCGAGCGTCGTGGATTTGGACGTGGATATTGGCGCTGATGCTGTCGAC
TACAAGTAGGTGTCCGTGTAGGCCGTGTGTTACATGTGCTGATGGAAATGTGTGCCAGTGCCATTGCGAACCAGG
AGTCGCTGTCGAGCCTCGAAACCGAGATGCGGAAGCTGGAAGGCGTGGTGAAGGAGATTGTGGACGAGATGGAGT
ACCTCAAGAAACGAGAGACTCGCTTTACCTCCACCAACAGTACGCTATGTCTTTTTCCGCCGAAAGTCTGTTTTC
TCACCGACTTTCCCCAGCCTCCACAAACGACCGTGTGCAAAACTTTGCCTGGTTCTCTATTTTCTCTCTTGCCGC
GCTCGGTGTATGGCAGGTTCTGCATCTGCGCTCCTACTTTAAACGCAAGTACCTCATCGACTAGTTGTTAGTGTT
ATTTTTTGTTTTCCATTACATTACATAATCTCCAACTTTGGCGGTGGTCTGTTGCCCCGTCTTTCTTCCTCCACA
ACCACAACCGCCACGCAAACCAGTCCTCGTCACTGCGCTCCAAGGTTCAACGCTACCACTAACAGCGCCAAAAAC
AGAGGCAAAGGGCATACGTCGTATTTGCAACAGCTCGGCTGACTTGATTCCCCAGTACAGGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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