Fungal Genomics

General Properties

Protein ID	AgabiH97|111810
Gene name
Location	scaffold_8:1482739..1483843
Strand	+
Gene length (bp)	1104
Transcript length (bp)	576
Coding sequence length (bp)	576
Protein length (aa)	192

Overview

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13656	RNA_pol_L_2	RNA polymerase Rpb3/Rpb11 dimerisation domain	2.2E-26	74	146
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	2.8E-12	78	138

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0006351	transcription, DNA-templated	Yes
GO:0046983	protein dimerization activity	Yes
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	Yes
GO:0044271	cellular nitrogen compound biosynthetic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0008152	metabolic process	No
GO:0019438	aromatic compound biosynthetic process	No
GO:1901576	organic substance biosynthetic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0016772	transferase activity, transferring phosphorus-containing groups	No
GO:0140640	catalytic activity, acting on a nucleic acid	No
GO:0008150	biological_process	No
GO:0016779	nucleotidyltransferase activity	No
GO:0071704	organic substance metabolic process	No
GO:0140098	catalytic activity, acting on RNA	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0005488	binding	No
GO:0009058	biosynthetic process	No
GO:0016070	RNA metabolic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0034062	5'-3' RNA polymerase activity	No
GO:0044249	cellular biosynthetic process	No
GO:0044237	cellular metabolic process	No
GO:0003824	catalytic activity	No
GO:0009987	cellular process	No
GO:0032774	RNA biosynthetic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0044238	primary metabolic process	No
GO:0097659	nucleic acid-templated transcription	No
GO:1901362	organic cyclic compound biosynthetic process	No
GO:0097747	RNA polymerase activity	No
GO:0003674	molecular_function	No
GO:0009059	macromolecule biosynthetic process	No
GO:0034654	nucleobase-containing compound biosynthetic process	No
GO:0016740	transferase activity	No
GO:0018130	heterocycle biosynthetic process	No
GO:0006807	nitrogen compound metabolic process	No
GO:0005515	protein binding	No
GO:0043170	macromolecule metabolic process	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Cytoplasm		0.6833	0.4807	0.0401	0.1356	0.3226	0.01	0.082	0.0862	0.0912	0.1544

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID	1
Orthogroup	4980
Change Orthofinder run	1: Agaricomycetes 5: Agaricus - all strains

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39|111810
Agaricus bisporus var bisporus H97	AgabiH97|111810 (this protein)
Rhodonia placenta FPRL280	RhoplFPRL280|55_41

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|111810 MDSMSTQDNGIETDLEARLSQIKIAFLSRSFPPRRHLARQSRIKPSNCTVHIYPILDGEKPVEVVEDSKIPNAAT IKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITPQELLEQACTKLIGTMSSLETKFKR EFSYKDVEGTVSGVTGHLDDPYGGTGTSGGAWSTGKDYLDL*
Coding	>AgabiH97|111810 ATGGACAGCATGTCGACGCAGGATAATGGCATAGAGACTGACCTTGAGGCGAGATTGAGCCAAATAAAAATCGCC TTTCTATCTCGATCCTTTCCTCCTCGTCGACATTTGGCTAGGCAAAGTCGAATCAAACCCTCCAATTGTACTGTT CATATATATCCCATATTAGATGGCGAAAAGCCTGTGGAAGTAGTTGAAGACAGCAAGATTCCTAATGCCGCAACT ATCAAGATTTTGAAGCAGGATCATACTTTAGGCAACATGCTCCGCGCTCAACTCCTCTCTATGCCTCAAATCCTC TTCGCTGGTTACAAAGTCCCACATCCTCTCCACCCCTACTTCCTCATCAAGATCCAAACCGACGGAACCATTACA CCACAAGAACTTCTCGAACAAGCTTGTACAAAGCTCATCGGAACCATGTCATCATTAGAAACGAAATTCAAGCGA GAGTTTTCTTATAAGGATGTTGAAGGTACTGTTAGTGGTGTTACAGGTCATCTTGATGATCCTTATGGTGGAACG GGTACAAGTGGAGGTGCTTGGTCTACAGGCAAAGATTATCTGGATCTTTAG
Transcript	>AgabiH97|111810 ATGGACAGCATGTCGACGCAGGATAATGGCATAGAGACTGACCTTGAGGCGAGATTGAGCCAAATAAAAATCGCC TTTCTATCTCGATCCTTTCCTCCTCGTCGACATTTGGCTAGGCAAAGTCGAATCAAACCCTCCAATTGTACTGTT CATATATATCCCATATTAGATGGCGAAAAGCCTGTGGAAGTAGTTGAAGACAGCAAGATTCCTAATGCCGCAACT ATCAAGATTTTGAAGCAGGATCATACTTTAGGCAACATGCTCCGCGCTCAACTCCTCTCTATGCCTCAAATCCTC TTCGCTGGTTACAAAGTCCCACATCCTCTCCACCCCTACTTCCTCATCAAGATCCAAACCGACGGAACCATTACA CCACAAGAACTTCTCGAACAAGCTTGTACAAAGCTCATCGGAACCATGTCATCATTAGAAACGAAATTCAAGCGA GAGTTTTCTTATAAGGATGTTGAAGGTACTGTTAGTGGTGTTACAGGTCATCTTGATGATCCTTATGGTGGAACG GGTACAAGTGGAGGTGCTTGGTCTACAGGCAAAGATTATCTGGATCTTTAG
Gene	>AgabiH97|111810 ATGGACAGCATGTCGACGCAGGATAATGGCATAGAGACTGACCTTGAGGCGAGAGTCGGTTTCTGGGCTTGTTGC GTCGGACGACCAAATCACTTTGCTGCCAGATTTGGGGCCATTGACAAATAAAGGTAAATATAGTTGAGCCAAATA AAAATCGCCTTTCTATCTCGATCCTTTCCTCCTCGTCGACATTTGGCTAGGTGAGCTTTCACACTTGCTTTGAAC ATGATGCGGATAATTATCCAAATTATTTATTGTCAATGAAAAACAATGATCTCACTTCTTTTGCTGATTCTCTTT CCTATGTGCTCGTGACGTAGTAAGCTGACCGACCCTCCCTAGGCAAAGTCGAATCAAACCCTCCAATTGTACTGT TCATATATATCCCATGTGAGTGTCGTTTCCTTAACCGAGTGCATCTCGGATGTGCATGACGTTCAAGTCCAACAA ACATGCTTCACACCCTCTACTGTGGCATCAGTCAGCTAACTAACAACTTCTTCTCAGATTAGTCTTCTGTCTTGA ATCATGAATGCTCCCAATCGATATGAAATTTATGTGCTTGAGGATGGCGAAAAGCCGTGCGTTCAAACTATTGCG TAATCACCATGGAATAACTTGACCGAGCTCCTCGGGGTGGTCCACAGTGTGGAAGTAGTTGAAGACAGCAAGATT CCTAATGCCGCAACTATCAAGATTTTGAAGCAGGATCATACTTTAGGCAACATGCTCCGCGCGTTCGTACTCTTT TTCAACCTCGCCCTACCCCTCAACTGACGCGTCGTAAAATTCTTCAAAAGTCAACTCCTCTCTATGCCTCAAATC CTCTTCGCTGGTTACAAAGTCCCACATCCTCTCCACCCCTACTTCCTCATCAAGATCCAAACCGACGGAACCATT ACACCACAAGAACTTCTCGAACAAGCTTGTACAAAGCTCATCGGAACCATGTCATCATTAGAAACGAAATTCAAG CGAGAGTTTTCTTATAAGGATGTTGAAGGTACTGTTAGTGGTGTTACAGGTCATCTTGATGATCCTTATGGTGGA ACGGGTACAAGTGGAGGTGCTTGGTCTACAGGCAAAGATTATCTGGATCTTTAG