Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|110970
Gene name
Locationscaffold_8:1264066..1266503
Strand-
Gene length (bp)2437
Transcript length (bp)1668
Coding sequence length (bp)1668
Protein length (aa) 556

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 3.1E-38 98 482
PF00083 Sugar_tr Sugar (and other) transporter 3.1E-08 126 194

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USN4|YJA1_SCHPO Uncharacterized transporter C1529.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1529.01 PE=3 SV=2 58 525 1.0E-113
sp|Q9P3E8|YLZ2_SCHPO Uncharacterized transporter C750.02c/PB2B2.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC750.02c PE=3 SV=1 78 528 2.0E-72
sp|Q9P3V5|YI45_SCHPO Uncharacterized transporter C1348.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1348.05 PE=3 SV=1 78 528 9.0E-72
sp|Q7Z9I0|YHA8_SCHPO Uncharacterized MFS-type transporter C409.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC409.08 PE=3 SV=1 1 527 3.0E-71
sp|O59700|YN43_SCHPO Uncharacterized transporter C36.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC36.03c PE=3 SV=1 23 532 1.0E-70
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USN4|YJA1_SCHPO Uncharacterized transporter C1529.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1529.01 PE=3 SV=2 58 525 1.0E-113
sp|Q9P3E8|YLZ2_SCHPO Uncharacterized transporter C750.02c/PB2B2.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC750.02c PE=3 SV=1 78 528 2.0E-72
sp|Q9P3V5|YI45_SCHPO Uncharacterized transporter C1348.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1348.05 PE=3 SV=1 78 528 9.0E-72
sp|Q7Z9I0|YHA8_SCHPO Uncharacterized MFS-type transporter C409.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC409.08 PE=3 SV=1 1 527 3.0E-71
sp|O59700|YN43_SCHPO Uncharacterized transporter C36.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC36.03c PE=3 SV=1 23 532 1.0E-70
sp|Q9Y7S4|YQO5_SCHPO Uncharacterized transporter C569.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC569.05c PE=3 SV=1 6 529 7.0E-70
sp|O59699|YN42_SCHPO Uncharacterized transporter C36.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC36.02c PE=3 SV=1 39 532 2.0E-69
sp|Q9HDX4|MFC1_SCHPO Uncharacterized transporter mfc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfc1 PE=3 SV=2 54 528 2.0E-69
sp|P38776|YHK8_YEAST Probable drug/proton antiporter YHK8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHK8 PE=1 SV=1 31 533 1.0E-68
sp|O59698|YN41_SCHPO Uncharacterized transporter C36.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC36.01c PE=1 SV=1 26 532 5.0E-65
sp|O74829|YN2F_SCHPO Uncharacterized MFS-type transporter C530.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.15c PE=1 SV=2 73 524 5.0E-63
sp|Q10084|MFS2_SCHPO Uncharacterized transporter mfs2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfs2 PE=3 SV=1 47 525 6.0E-62
sp|Q06451|TPO3_YEAST Polyamine transporter 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO3 PE=1 SV=1 46 535 1.0E-61
sp|P53283|TPO2_YEAST Polyamine transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO2 PE=1 SV=1 59 535 3.0E-61
sp|O43081|YHS6_SCHPO Uncharacterized MFS-type transporter C947.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.06c PE=3 SV=1 50 527 3.0E-60
sp|O94528|CAF5_SCHPO Caffeine resistance protein 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=caf5 PE=3 SV=1 50 527 4.0E-60
sp|O59738|YN22_SCHPO Uncharacterized transporter C530.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC530.02 PE=3 SV=1 54 519 4.0E-59
sp|Q07824|TPO1_YEAST Polyamine transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO1 PE=1 SV=1 9 527 6.0E-59
sp|O59814|YCT4_SCHPO Uncharacterized transporter C794.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.04c PE=3 SV=1 42 528 7.0E-58
sp|Q10487|MFS1_SCHPO Transporter mfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfs1 PE=3 SV=1 58 527 1.0E-57
sp|Q12256|TPO4_YEAST Polyamine transporter 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPO4 PE=1 SV=1 50 527 1.0E-57
sp|P38124|FLR1_YEAST Fluconazole resistance protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FLR1 PE=1 SV=1 72 532 8.0E-56
sp|P28873|BMRP_CANAX Benomyl/methotrexate resistance protein OS=Candida albicans GN=MDR1 PE=3 SV=1 74 527 1.0E-55
sp|Q5ABU7|MDR1_CANAL Multidrug resistance protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MDR1 PE=1 SV=1 74 527 1.0E-55
sp|P32071|CYHR_CANMA Cycloheximide resistance protein OS=Candida maltosa GN=CYHR PE=3 SV=1 41 527 1.0E-49
sp|O59833|YCUD_SCHPO Uncharacterized transporter C965.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC965.13 PE=3 SV=1 23 529 1.0E-33
sp|P33532|BSU1_SCHPO Vitamin B6 transporter bsu1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bsu1 PE=3 SV=2 45 543 1.0E-28
sp|P38125|DTR1_YEAST Dityrosine transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DTR1 PE=1 SV=1 45 495 2.0E-26
sp|O74899|YQEH_SCHPO Uncharacterized transporter C576.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.17c PE=1 SV=1 19 534 1.0E-25
sp|Q59XM0|QDR3_CANAL MFS antiporter QDR3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=QDR3 PE=2 SV=1 80 259 2.0E-25
sp|G2TRN8|YI74_SCHPO Putative uncharacterized transporter C977.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC977.04 PE=5 SV=1 385 529 1.0E-24
sp|P38227|QDR3_YEAST Quinidine resistance protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QDR3 PE=1 SV=2 80 258 2.0E-19
sp|O94343|YHMA_SCHPO Uncharacterized MFS-type transporter C1271.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.10c PE=1 SV=1 78 493 6.0E-16
sp|Q59XM0|QDR3_CANAL MFS antiporter QDR3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=QDR3 PE=2 SV=1 312 504 3.0E-15
sp|P53943|AQR1_YEAST Probable transporter AQR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AQR1 PE=1 SV=1 17 504 4.0E-15
sp|P38227|QDR3_YEAST Quinidine resistance protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QDR3 PE=1 SV=2 354 519 9.0E-14
sp|P96709|YDGK_BACSU Uncharacterized MFS-type transporter YdgK OS=Bacillus subtilis (strain 168) GN=ydgK PE=3 SV=1 86 240 1.0E-11
sp|O34307|YVMA_BACSU Uncharacterized MFS-type transporter YvmA OS=Bacillus subtilis (strain 168) GN=yvmA PE=3 SV=1 95 399 1.0E-11
sp|P45123|BCR_HAEIN Bicyclomycin resistance protein homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bcr PE=3 SV=1 105 278 3.0E-11
sp|P28246|BCR_ECOLI Bicyclomycin resistance protein OS=Escherichia coli (strain K12) GN=bcr PE=1 SV=4 93 274 4.0E-09
sp|P40475|QDR1_YEAST Quinidine resistance protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=QDR1 PE=1 SV=1 31 496 1.0E-07
sp|A7FG15|MDTD_YERP3 Putative multidrug resistance protein MdtD OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|Q1C5L8|MDTD_YERPA Putative multidrug resistance protein MdtD OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|B2K9M2|MDTD_YERPB Putative multidrug resistance protein MdtD OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|Q7CJL1|MDTD_YERPE Putative multidrug resistance protein MdtD OS=Yersinia pestis GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|Q1CK62|MDTD_YERPN Putative multidrug resistance protein MdtD OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|A4TMR4|MDTD_YERPP Putative multidrug resistance protein MdtD OS=Yersinia pestis (strain Pestoides F) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|B1JSD2|MDTD_YERPY Putative multidrug resistance protein MdtD OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|A9QZU7|MDTD_YERPG Putative multidrug resistance protein MdtD OS=Yersinia pestis bv. Antiqua (strain Angola) GN=mdtD PE=3 SV=1 90 266 4.0E-07
sp|A1JKW8|MDTD_YERE8 Putative multidrug resistance protein MdtD OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN=mdtD PE=3 SV=2 151 252 5.0E-07
sp|Q59YT1|QDR2_CANAL MFS antiporter QDR2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=QDR2 PE=3 SV=1 57 533 5.0E-07
sp|P9WG87|Y1250_MYCTU Uncharacterized MFS-type transporter Rv1250 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1250 PE=3 SV=1 83 252 2.0E-06
sp|P9WG86|Y1250_MYCTO Uncharacterized MFS-type transporter MT1289 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1289 PE=3 SV=1 83 252 2.0E-06
sp|Q668C4|MDTD_YERPS Putative multidrug resistance protein MdtD OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=mdtD PE=3 SV=1 90 266 3.0E-06
sp|Q8XB84|MDTM_ECO57 Multidrug resistance protein MdtM OS=Escherichia coli O157:H7 GN=mdtM PE=3 SV=1 99 265 3.0E-06
sp|O32182|YUSP_BACSU Uncharacterized MFS-type transporter YusP OS=Bacillus subtilis (strain 168) GN=yusP PE=3 SV=1 89 252 4.0E-06
sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 142 322 4.0E-06
sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 142 322 4.0E-06
sp|P39386|MDTM_ECOLI Multidrug resistance protein MdtM OS=Escherichia coli (strain K12) GN=mdtM PE=1 SV=1 99 265 5.0E-06
sp|A8GHR1|MDTD_SERP5 Putative multidrug resistance protein MdtD OS=Serratia proteamaculans (strain 568) GN=mdtD PE=3 SV=1 166 272 6.0E-06
sp|Q43975|PCAK_ACIAD 4-hydroxybenzoate transporter PcaK OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=pcaK PE=1 SV=3 58 242 6.0E-06
sp|A8AEE4|MDTD_CITK8 Putative multidrug resistance protein MdtD OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=mdtD PE=3 SV=1 86 285 8.0E-06
sp|P37498|YYBF_BACSU Uncharacterized MFS-type transporter YybF OS=Bacillus subtilis (strain 168) GN=yybF PE=3 SV=1 126 263 9.0E-06
sp|Q7CP73|MDTM_SALTY Multidrug resistance protein MdtM OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=mdtM PE=3 SV=1 99 256 1.0E-05
sp|Q8XFG0|MDTM_SALTI Multidrug resistance protein MdtM OS=Salmonella typhi GN=mdtM PE=3 SV=1 99 256 1.0E-05
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GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0022857 transmembrane transporter activity Yes
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0051234 establishment of localization No
GO:0031224 intrinsic component of membrane No
GO:0008150 biological_process No
GO:0009987 cellular process No
GO:0005215 transporter activity No
GO:0110165 cellular anatomical entity No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 66 0.45

Transmembrane Domains

Domain # Start End Length
1 93 115 22
2 130 152 22
3 159 181 22
4 185 207 22
5 219 241 22
6 246 268 22
7 319 341 22
8 361 383 22
9 404 425 21
10 435 457 22
11 464 486 22
12 496 518 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 107.05 63.06 151.04
Initials Initials knots 59.88 35.31 84.45
Pileal_Stipeal_center Stage I stipe center 389.31 202.97 575.64
Pileal_Stipeal_shell Stage I stipe shell 86.46 51.88 121.04
DIF_stipe_center Stage II stipe center 248.64 137.91 359.37
DIF_stipe_shell Stage II stipe shell 598.63 278.25 919.01
DIF_stipe_skin Stage II stipe skin 539.15 243.81 834.50
DIF_cap_skin Stage II cap skin 92.55 53.93 131.17
DIF_cap_tissue Stage II cap tissue 109.43 61.77 157.10
DIF_gill_tissue Stage II gill tissue 116.67 68.24 165.10
YFB_stipe_center Young fruiting body stipe center 185.14 102.48 267.81
YFB_stipe_shell Young fruiting body stipe shell 383.98 200.90 567.05
YFB_stipe_skin Young fruiting body stipe skin 715.12 314.00 1116.24
YFB_cap_skin Young fruiting body cap skin 87.84 52.51 123.16
YFB_cap_tissue Young fruiting body cap tissue 31.47 17.31 45.64
YFB_gill_tissue Young fruiting body gill tissue 268.23 148.16 388.29
YFB_veil Young fruiting body veil 223.73 92.70 354.76

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.857891 no
Casing YFB_stipe_center 0.054170 no
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.603614 no
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.000613 yes
Casing YFB_veil 0.035993 yes
Casing Initials 0.031088 yes
Casing Pileal_Stipeal_center 0.000613 yes
Casing Pileal_Stipeal_shell 0.552579 no
Casing DIF_stipe_center 0.001625 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.000613 yes
Casing DIF_cap_skin 0.732490 no
Casing DIF_cap_tissue 0.969753 no
DIF_gill_tissue YFB_stipe_center 0.121262 no
DIF_gill_tissue YFB_stipe_shell 0.000613 yes
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.398218 no
DIF_gill_tissue YFB_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_gill_tissue 0.002084 yes
DIF_gill_tissue YFB_veil 0.065465 no
YFB_stipe_center YFB_stipe_shell 0.016669 yes
YFB_stipe_center YFB_stipe_skin 0.000613 yes
YFB_stipe_center YFB_cap_skin 0.005302 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.270057 no
YFB_stipe_center YFB_veil 0.717648 no
YFB_stipe_shell YFB_stipe_skin 0.093337 no
YFB_stipe_shell YFB_cap_skin 0.000613 yes
YFB_stipe_shell YFB_cap_tissue 0.000613 yes
YFB_stipe_shell YFB_gill_tissue 0.320070 no
YFB_stipe_shell YFB_veil 0.162096 no
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.002951 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.000613 yes
YFB_cap_skin YFB_gill_tissue 0.000613 yes
YFB_cap_skin YFB_veil 0.006387 yes
YFB_cap_tissue YFB_gill_tissue 0.000613 yes
YFB_cap_tissue YFB_veil 0.000613 yes
YFB_gill_tissue YFB_veil 0.726896 no
Initials DIF_gill_tissue 0.009773 yes
Initials YFB_stipe_center 0.000613 yes
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.200550 no
Initials YFB_cap_tissue 0.026215 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.000613 yes
Initials Pileal_Stipeal_center 0.000613 yes
Initials Pileal_Stipeal_shell 0.209608 no
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.129827 no
Initials DIF_cap_tissue 0.028193 yes
Pileal_Stipeal_center DIF_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_stipe_center 0.010728 yes
Pileal_Stipeal_center YFB_stipe_shell 0.982846 no
Pileal_Stipeal_center YFB_stipe_skin 0.097608 no
Pileal_Stipeal_center YFB_cap_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_center YFB_gill_tissue 0.291341 no
Pileal_Stipeal_center YFB_veil 0.147547 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_center 0.176182 no
Pileal_Stipeal_center DIF_stipe_shell 0.252511 no
Pileal_Stipeal_center DIF_stipe_skin 0.453095 no
Pileal_Stipeal_center DIF_cap_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.349049 no
Pileal_Stipeal_shell YFB_stipe_center 0.002525 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.977504 no
Pileal_Stipeal_shell YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_shell YFB_gill_tissue 0.000613 yes
Pileal_Stipeal_shell YFB_veil 0.005302 yes
Pileal_Stipeal_shell DIF_stipe_center 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_shell DIF_cap_skin 0.895027 no
Pileal_Stipeal_shell DIF_cap_tissue 0.520249 no
DIF_stipe_center DIF_gill_tissue 0.004548 yes
DIF_stipe_center YFB_stipe_center 0.414334 no
DIF_stipe_center YFB_stipe_shell 0.198663 no
DIF_stipe_center YFB_stipe_skin 0.002951 yes
DIF_stipe_center YFB_cap_skin 0.000613 yes
DIF_stipe_center YFB_cap_tissue 0.000613 yes
DIF_stipe_center YFB_gill_tissue 0.888070 no
DIF_stipe_center YFB_veil 0.859917 no
DIF_stipe_center DIF_stipe_shell 0.003365 yes
DIF_stipe_center DIF_stipe_skin 0.021322 yes
DIF_stipe_center DIF_cap_skin 0.000613 yes
DIF_stipe_center DIF_cap_tissue 0.001140 yes
DIF_stipe_shell DIF_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_stipe_center 0.000613 yes
DIF_stipe_shell YFB_stipe_shell 0.231538 no
DIF_stipe_shell YFB_stipe_skin 0.759871 no
DIF_stipe_shell YFB_cap_skin 0.000613 yes
DIF_stipe_shell YFB_cap_tissue 0.000613 yes
DIF_stipe_shell YFB_gill_tissue 0.010728 yes
DIF_stipe_shell YFB_veil 0.003365 yes
DIF_stipe_shell DIF_stipe_skin 0.870902 no
DIF_stipe_shell DIF_cap_skin 0.000613 yes
DIF_stipe_shell DIF_cap_tissue 0.000613 yes
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.002084 yes
DIF_stipe_skin YFB_stipe_shell 0.427411 no
DIF_stipe_skin YFB_stipe_skin 0.584664 no
DIF_stipe_skin YFB_cap_skin 0.000613 yes
DIF_stipe_skin YFB_cap_tissue 0.000613 yes
DIF_stipe_skin YFB_gill_tissue 0.045273 yes
DIF_stipe_skin YFB_veil 0.017783 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.517621 no
DIF_cap_skin YFB_stipe_center 0.010093 yes
DIF_cap_skin YFB_stipe_shell 0.000613 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.921606 no
DIF_cap_skin YFB_cap_tissue 0.000613 yes
DIF_cap_skin YFB_gill_tissue 0.000613 yes
DIF_cap_skin YFB_veil 0.010093 yes
DIF_cap_skin DIF_cap_tissue 0.695529 no
DIF_cap_tissue DIF_gill_tissue 0.906368 no
DIF_cap_tissue YFB_stipe_center 0.081406 no
DIF_cap_tissue YFB_stipe_shell 0.000613 yes
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.575881 no
DIF_cap_tissue YFB_cap_tissue 0.000613 yes
DIF_cap_tissue YFB_gill_tissue 0.000613 yes
DIF_cap_tissue YFB_veil 0.042692 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|110970
MTLDSRPQTTSSSTASSHTQVPHELQPHDAQKHTSMLISQGSKPHPPAAEDRKAIAAEDRKAKAEAEAEEEEMDW
DADPENPRNWPWGKKWRVVSVVSLYTFCSPLASSMMAPGLPDVGIKYGISSPTLIALTLSIFLFSFAIGPLLFAP
LSEMYGRTWVLHIANLFTMAFSLGCAFSPDVGSLIAFRFLSGLSGSSPIAIGGGSVSDVFSERDRASAMAIFTLG
PLVGPVVGPIAGGFITDAIGVKWVFIVIACICGFASAIGLPILRETYAPVIRLRRAARAGDPEATRKYHPVLDQA
NGSILKLLWINLKRPVVMLFTSFICFILSLYMAFLYGIFYLMFSTFADFFAKTYNFSAGVGGLAYLGLGVGFFLA
TLVGGRFAGEVYTRLALRNGGIGKPEMRIPALFLGSLFIPVGLFWYGWSAQAKIHWIMPIIGSGIFGFGMMMAFL
PIQLYLVDTFKYAASALAAASLFRSLLGFAFPLFGAQMFAAMGEGGGNSLLAGLSIVLGIPFPIFIYYKGEMLRA
RNPLTADSVKRTIVLQQRAMASMQNEKTSA*
Coding >AgabiH97|110970
ATGACGCTTGATTCACGGCCGCAAACAACGAGCTCGAGTACCGCATCTTCGCATACCCAGGTTCCTCACGAATTA
CAACCTCACGATGCTCAAAAACATACTTCGATGTTGATATCACAAGGCAGCAAGCCCCATCCTCCTGCGGCGGAG
GATAGAAAAGCAATTGCAGCGGAGGATAGGAAGGCAAAAGCGGAAGCAGAAGCAGAAGAGGAAGAGATGGATTGG
GATGCTGATCCGGAAAATCCAAGAAATTGGCCTTGGGGGAAGAAATGGCGGGTGGTGTCCGTTGTTTCCCTGTAT
ACATTTTGTTCCCCATTAGCCAGTTCAATGATGGCCCCTGGTTTGCCTGATGTGGGCATCAAATATGGCATCTCC
AGTCCGACACTGATCGCTTTAACGCTGTCAATATTCCTATTCTCATTTGCAATTGGACCGCTACTTTTTGCTCCT
CTGTCGGAGATGTATGGAAGGACCTGGGTCCTCCATATTGCCAATTTATTTACTATGGCATTCAGTTTGGGATGT
GCATTCTCACCAGACGTGGGATCCCTGATCGCCTTTCGGTTTCTTTCTGGGCTTTCTGGAAGTTCTCCAATTGCT
ATTGGTGGCGGTTCTGTTAGCGATGTCTTTTCCGAACGTGATCGTGCCAGTGCAATGGCAATATTCACCTTGGGA
CCATTAGTTGGCCCGGTTGTTGGACCGATTGCTGGTGGTTTCATCACAGACGCGATCGGCGTTAAATGGGTATTT
ATCGTAATTGCGTGTATATGCGGCTTTGCTTCTGCGATAGGCCTTCCAATATTACGGGAAACTTATGCCCCTGTT
ATCCGGCTGAGGCGAGCTGCTCGCGCAGGGGACCCTGAAGCCACTCGAAAATATCACCCGGTACTGGACCAAGCT
AATGGTAGCATACTCAAGCTTCTCTGGATTAATCTCAAACGACCGGTTGTCATGCTCTTTACGAGCTTCATTTGC
TTTATTCTCAGTCTATATATGGCATTCTTATACGGAATATTCTATCTCATGTTCTCAACATTCGCCGACTTCTTT
GCCAAGACGTACAATTTCAGCGCAGGTGTTGGAGGCTTAGCCTACCTAGGCCTCGGAGTTGGGTTCTTCTTGGCC
ACACTTGTTGGCGGTAGATTTGCGGGCGAAGTCTATACAAGGCTGGCTTTGAGGAATGGCGGGATTGGAAAACCA
GAAATGCGAATTCCAGCCTTGTTCCTCGGTTCTCTCTTCATTCCCGTTGGTCTCTTCTGGTATGGTTGGTCTGCT
CAAGCAAAAATACACTGGATCATGCCCATCATTGGATCAGGAATTTTCGGTTTTGGAATGATGATGGCATTCCTT
CCAATCCAACTTTACCTAGTCGACACCTTCAAGTATGCCGCTAGTGCCCTCGCCGCAGCTTCTCTTTTCCGCTCA
TTACTCGGCTTTGCGTTCCCGCTGTTTGGTGCTCAGATGTTCGCAGCCATGGGTGAAGGCGGCGGCAATTCCCTG
CTGGCTGGTCTCTCGATCGTCCTTGGTATTCCATTCCCCATATTCATATATTACAAAGGGGAAATGCTGCGCGCA
AGGAATCCACTTACAGCTGACTCGGTAAAGCGTACGATTGTTTTACAACAACGAGCTATGGCCTCAATGCAAAAT
GAAAAAACCTCAGCATGA
Transcript >AgabiH97|110970
ATGACGCTTGATTCACGGCCGCAAACAACGAGCTCGAGTACCGCATCTTCGCATACCCAGGTTCCTCACGAATTA
CAACCTCACGATGCTCAAAAACATACTTCGATGTTGATATCACAAGGCAGCAAGCCCCATCCTCCTGCGGCGGAG
GATAGAAAAGCAATTGCAGCGGAGGATAGGAAGGCAAAAGCGGAAGCAGAAGCAGAAGAGGAAGAGATGGATTGG
GATGCTGATCCGGAAAATCCAAGAAATTGGCCTTGGGGGAAGAAATGGCGGGTGGTGTCCGTTGTTTCCCTGTAT
ACATTTTGTTCCCCATTAGCCAGTTCAATGATGGCCCCTGGTTTGCCTGATGTGGGCATCAAATATGGCATCTCC
AGTCCGACACTGATCGCTTTAACGCTGTCAATATTCCTATTCTCATTTGCAATTGGACCGCTACTTTTTGCTCCT
CTGTCGGAGATGTATGGAAGGACCTGGGTCCTCCATATTGCCAATTTATTTACTATGGCATTCAGTTTGGGATGT
GCATTCTCACCAGACGTGGGATCCCTGATCGCCTTTCGGTTTCTTTCTGGGCTTTCTGGAAGTTCTCCAATTGCT
ATTGGTGGCGGTTCTGTTAGCGATGTCTTTTCCGAACGTGATCGTGCCAGTGCAATGGCAATATTCACCTTGGGA
CCATTAGTTGGCCCGGTTGTTGGACCGATTGCTGGTGGTTTCATCACAGACGCGATCGGCGTTAAATGGGTATTT
ATCGTAATTGCGTGTATATGCGGCTTTGCTTCTGCGATAGGCCTTCCAATATTACGGGAAACTTATGCCCCTGTT
ATCCGGCTGAGGCGAGCTGCTCGCGCAGGGGACCCTGAAGCCACTCGAAAATATCACCCGGTACTGGACCAAGCT
AATGGTAGCATACTCAAGCTTCTCTGGATTAATCTCAAACGACCGGTTGTCATGCTCTTTACGAGCTTCATTTGC
TTTATTCTCAGTCTATATATGGCATTCTTATACGGAATATTCTATCTCATGTTCTCAACATTCGCCGACTTCTTT
GCCAAGACGTACAATTTCAGCGCAGGTGTTGGAGGCTTAGCCTACCTAGGCCTCGGAGTTGGGTTCTTCTTGGCC
ACACTTGTTGGCGGTAGATTTGCGGGCGAAGTCTATACAAGGCTGGCTTTGAGGAATGGCGGGATTGGAAAACCA
GAAATGCGAATTCCAGCCTTGTTCCTCGGTTCTCTCTTCATTCCCGTTGGTCTCTTCTGGTATGGTTGGTCTGCT
CAAGCAAAAATACACTGGATCATGCCCATCATTGGATCAGGAATTTTCGGTTTTGGAATGATGATGGCATTCCTT
CCAATCCAACTTTACCTAGTCGACACCTTCAAGTATGCCGCTAGTGCCCTCGCCGCAGCTTCTCTTTTCCGCTCA
TTACTCGGCTTTGCGTTCCCGCTGTTTGGTGCTCAGATGTTCGCAGCCATGGGTGAAGGCGGCGGCAATTCCCTG
CTGGCTGGTCTCTCGATCGTCCTTGGTATTCCATTCCCCATATTCATATATTACAAAGGGGAAATGCTGCGCGCA
AGGAATCCACTTACAGCTGACTCGGTAAAGCGTACGATTGTTTTACAACAACGAGCTATGGCCTCAATGCAAAAT
GAAAAAACCTCAGCATGA
Gene >AgabiH97|110970
ATGACGCTTGATTCACGGCCGCAAACAACGAGCTCGAGTACCGCATCTTCGCATACCCAGGTTCCTCACGAATTA
CAACCTCACGATGCTCAAAAACATACTTCGATGTTGATATCACAAGGCAGCAAGCCCCATCCTCCTGCGGCGGAG
GATAGAAAAGCAATTGCAGCGGAGGATAGGAAGGCAAAAGCGGAAGCAGAAGCAGAAGAGGAAGAGATGGATTGG
GATGCTGATCCGGAAAATCCAAGAAATTGGCCTTGGGGGAAGAAATGGCGGGTGGTGTCCGTTGTAAGTGTCATA
CCTAGCTATCCAGCCTAGTCCCTACATTAAAGTCAACCCATCATCATCAGGTTTCCCTGTATACATTTTGTTCCC
CATTAGCCAGTTCAATGATGGCCCCTGGTTTGCCTGATGTGGGCATCAAATATGGCATCTCCAGTCCGACACTGA
TCGCTTTAACGCTGTCAATATTCCTATTCTCATTTGCAATTGGAGTACGTGATTGTCATGCTGCTGCCAAACTAT
AAACGCAGAACCTAATATGCATCGCTCGTGCTAGCCGCTACTTTTTGCTCCTCTGTCGGAGATGTATGGAAGGAC
CTGGGTATGTCCTAATCAATTTCCTGGCAGTCACCGTAATTTCTCACCGGGTAGTTTCCGGTCAATCAAAGGTCC
TCCATATTGCCAATTTATTTACTATGGCATTCAGTTTGGGATGTGCATTCTCACCAGACGTGGGATCCCTGATCG
CCTTTCGGTTTCTTTGTACGCAATCATATCCTTTCTTCCTCTGCGGCGGAATTATGGCTCACGAAGTACATTGAT
TACTTAGCTGGGCTTTCTGGAAGTTCTCCAATTGCTATTGGTGGCGGTTCTGTTAGCGATGTCTTTTCCGAACGT
GATCGTGCCAGTGCAATGGCAATATTCACCTTGGGACCATTAGTTGGTTCGTATCTACTCGTCTGGTGATTAACC
TTGGGTTTCTGACTTTCTCTTCGAAGGCCCGGTTGTTGGACCGATTGCTGGTGGTTTCATCACAGACGCGATCGG
CGTTAAATGGGTATTTATCGTAATTGCGTGTAAGTCCGCCTTTGCGTGTCCATAAGGACGAGCTGACCTGAATTC
ATCATGATCAGGTATATGCGGCTTTGCTTCTGCGATAGGCCTTCCAATATTACGGGAAACTTATGCCCCTGTTAT
CCGGCTGAGGCGAGCTGCTCGCGCAGGGGACCCTGAAGCCACTCGAAAATATCACCCGGTACTGGACCAAGCTAA
TGGTAGCATACTCAAGCTTCTCTGGATTAATCTCAAACGACCGGTTGTCATGCTCTTTACGAGCTTCATTTGCTT
TATTCTCAGTCTATATATGGCATTGTAAGTTCAGATCGCCTCGGATATGCGCCATAGGTTGTGCTGACATTGAGA
AAAAGCTTATACGGAATATTCTATCTCATGTTCTCAACATTCGCCGACTTCTTTGCCAAGACGTACAATTTCAGC
GCAGGTGTTGGAGGCTTAGCCTACCTAGGCCTCGGAGTTGGGTTCTTCTTGGCCACACTTGTTGGCGGTAGATTT
GCGGGCGAAGTCTATACAAGGGTGCGTATACGATTATTGTCTCTTATCGTTCTCGGATAGCTCAATGATGCAATC
CAACGTAGCTGGCTTTGAGGAATGGCGGGATTGGAAAACCAGAAATGCGAATTCCAGCCTTGTTCCTCGGTTCTC
TCTTCATTCCCGTTGGTCTCTTGTGAGTCACCTGTCCTATATCGAGCTCCGCTTCTTAACGATACTCGTAGCTGG
TATGGTTGGTCTGCTCAAGCAAAAATACACTGGATCATGCCCATCATTGGATCAGGAATTTTCGGTTTTGGTAAG
TCCTACAGTTTTGGAGCTCAAATCTTGTCTGATCGTCATTACACATAGGAATGATGATGGCATTGTAAGCACCAT
TAGCGATCAAATTCAAAGTTTCGCATCCTGATTGTCATTCCGTGTAGCCTTCCAATCCAACTTTACCTAGTCGAC
ACCTTCAAGTATGCCGCTAGTGCCCTCGCCGCAGCTTCTGTGCGTATTTCCGTATGACCAATGTCTTGTGTGATT
TAATGATGGTTATCGTCACGTTCAGCTTTTCCGCTCATTACTCGGCTTTGCGTTCCCGCTGTTTGGTGCTCAGAT
GTTCGCAGCCATGGGTGAAGGCGGCGGCAATTCCGTACGTTTTTCCATTCAACTCTTGTGCCGCACACTCTCTAA
CCCTATTTACTTGCAGCTGCTGGCTGGTCTCTCGATCGTCCTTGGTATTCCATTCCCCATATTCATATATTACAA
AGGGGAAATGCTGCGCGCAAGGAATCCACTTACAGCTGACTCGGTAAAGCGTACGATTGTTTTACAACAACGAGC
TATGGCCTCAATGCAAAATGAAAAAACCTCAGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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