Protein ID | AgabiH97|110530 |
Gene name | |
Location | scaffold_8:1135262..1137472 |
Strand | + |
Gene length (bp) | 2210 |
Transcript length (bp) | 2157 |
Coding sequence length (bp) | 2157 |
Protein length (aa) | 719 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04433 | SWIRM | SWIRM domain | 8.3E-32 | 132 | 217 |
PF16495 | SWIRM-assoc_1 | SWIRM-associated region 1 | 4.4E-22 | 555 | 633 |
PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 1.4E-11 | 382 | 423 |
PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 2.1E-08 | 383 | 425 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14470|SSR2_SCHPO | SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 | 121 | 629 | 4.0E-115 |
sp|P43609|RSC8_YEAST | Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 | 113 | 432 | 3.0E-96 |
sp|O13788|SSR1_SCHPO | SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 | 103 | 669 | 2.0E-82 |
sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 72 | 300 | 7.0E-60 |
sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 81 | 300 | 2.0E-58 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O14470|SSR2_SCHPO | SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 | 121 | 629 | 4.0E-115 |
sp|P43609|RSC8_YEAST | Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 | 113 | 432 | 3.0E-96 |
sp|O13788|SSR1_SCHPO | SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 | 103 | 669 | 2.0E-82 |
sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 72 | 300 | 7.0E-60 |
sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 81 | 300 | 2.0E-58 |
sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 125 | 302 | 2.0E-57 |
sp|Q6PDG5|SMRC2_MOUSE | SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 | 125 | 302 | 6.0E-57 |
sp|Q9XI07|SWI3C_ARATH | SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1 | 130 | 654 | 1.0E-48 |
sp|P32591|SWI3_YEAST | SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 | 125 | 257 | 7.0E-42 |
sp|Q8W475|SWI3A_ARATH | SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1 | 123 | 426 | 3.0E-29 |
sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 362 | 482 | 1.0E-26 |
sp|Q6PDG5|SMRC2_MOUSE | SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 | 362 | 482 | 1.0E-26 |
sp|P32591|SWI3_YEAST | SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 | 382 | 625 | 6.0E-25 |
sp|Q84JG2|SWI3B_ARATH | SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 | 129 | 625 | 3.0E-23 |
sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 376 | 482 | 7.0E-22 |
sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 376 | 482 | 7.0E-22 |
sp|Q54J55|MYBX_DICDI | Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1 | 322 | 483 | 1.0E-21 |
sp|Q8VY05|SWI3D_ARATH | SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3 | 316 | 431 | 6.0E-16 |
sp|Q8VY05|SWI3D_ARATH | SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3 | 83 | 218 | 8.0E-14 |
sp|Q9ATB4|TAD2B_ARATH | Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1 | 287 | 431 | 4.0E-08 |
sp|Q5RGA4|MYSM1_DANRE | Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2 | 138 | 220 | 6.0E-08 |
sp|Q75LL6|TADA2_ORYSJ | Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2 | 320 | 421 | 9.0E-08 |
sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 472 | 622 | 3.0E-07 |
sp|Q5F3F2|MYSM1_CHICK | Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2 SV=1 | 138 | 217 | 3.0E-07 |
sp|B6MUN4|MYSM1_BRAFL | Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1 PE=3 SV=1 | 115 | 224 | 3.0E-06 |
sp|Q59WH0|ADA2_CANAL | Transcriptional adapter 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ADA2 PE=3 SV=1 | 322 | 427 | 4.0E-06 |
sp|A0JMR6|MYSM1_XENLA | Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2 SV=1 | 138 | 217 | 5.0E-06 |
sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 483 | 622 | 9.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|110530 MDSPKRAGSATPQNDPKRIKLAVNHGATPVDPDNAPGKRNEQDPIQSTDIANLHPENAPTHDPPPSVRVRQLKDG EEDEPGDVSMADGADDDGDSADDNDDEDPAQLEATRLRLEEQARKYLAAQTHEIIIPSYSNWFDMSKIHPVERRA VPEFFNSRNRSKTPSIYKDYRDFMINTYRLRPTEYLTVTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDPEQRP AALSPPFTGHFRVILDTPRGLQSLHPGTRPSVPNATAGGAPANVKAPSATPASLELRSSIYQTTSKSSKALSSAE ATTLANGASNGTSHTPQHTHTCDVCGADCSQVRYHCLKDKKLEVCAPCYLDGRFPSTLFSGDFVKLTTAPPGIAG ASSANNDWSDQETLLLLEGVEMYDDDWSKVEEHVGTRTAQQCIRRFLELPIEDPYLQTEGNMGPLRFGRIPFDQA DNPIMSVVAFLAGVVNSSVAAEAAKTALKELTDGESGKKSEKGEGEKKDEDKMDEDVPSSRQSPPESASSSDPTK ISTTTTTTMTSTTTTTHTLPHSQVQRAAHLALSASAKAAQNLATAEDQQIRGTLSNLIKLTLTKLEIKMSQFEEL EEILEEERRNLESARVALVNERLGLKKMLDTVRGEVVRHQQQQQQQQLAVATGGPSSSASQQQQQPGFSQGVINA ATNPGMALGMSGQGPIVNEVQSSAMNVEGGEGPVQDGQTLQLS* |
Coding | >AgabiH97|110530 ATGGACTCGCCAAAACGCGCTGGCTCTGCAACTCCCCAGAACGACCCCAAGCGCATCAAGCTCGCCGTCAACCAC GGCGCTACCCCCGTCGACCCCGACAACGCCCCCGGGAAGCGCAACGAGCAGGACCCCATCCAGTCCACCGACATC GCAAACCTCCACCCCGAAAATGCCCCGACCCACGACCCCCCGCCGTCTGTCCGCGTCAGGCAGCTCAAAGACGGC GAGGAGGACGAACCTGGTGACGTGTCCATGGCCGACGGCGCTGACGATGACGGCGACTCGGCGGACGACAACGAC GACGAAGACCCTGCCCAGCTCGAGGCTACCCGTCTGCGTCTCGAAGAGCAGGCGCGCAAGTATCTGGCCGCCCAG ACCCACGAAATCATCATCCCAAGCTATTCCAATTGGTTTGACATGTCCAAAATCCACCCCGTCGAAAGACGAGCC GTCCCCGAATTTTTCAACTCGCGCAACCGTTCAAAGACTCCGTCCATATACAAGGACTACCGCGACTTTATGATC AACACCTACCGTCTCCGCCCCACAGAGTATCTCACTGTCACCGCCTGCCGTAGAAATCTGGCCGGCGACGTCTGT GCTATCATGCGCGTACACGCCTTTCTCGAGCAATGGGGCCTGATCAACTACCAGATCGACCCCGAGCAACGCCCA GCAGCCCTTTCTCCTCCCTTCACTGGCCACTTCCGCGTCATCCTCGACACCCCACGCGGCCTCCAGTCCCTCCAC CCCGGCACGCGACCTTCCGTTCCAAACGCCACCGCTGGTGGGGCACCTGCCAATGTAAAAGCGCCTTCAGCCACC CCAGCCTCTCTCGAACTTCGTTCCTCCATCTACCAAACCACATCCAAATCCTCCAAGGCCCTCTCTTCCGCCGAA GCCACGACTCTCGCAAATGGCGCTTCCAACGGCACTTCGCATACTCCACAGCACACACATACGTGTGACGTTTGT GGTGCAGATTGTTCTCAAGTCCGTTATCACTGCCTAAAAGACAAAAAACTTGAAGTTTGCGCCCCTTGTTATCTT GATGGTCGCTTCCCATCGACGCTTTTCTCTGGGGATTTCGTCAAATTAACGACAGCGCCACCTGGTATCGCTGGT GCTTCTTCCGCGAACAACGATTGGTCCGACCAAGAAACCCTTCTTCTACTGGAAGGTGTCGAAATGTACGATGAC GATTGGTCAAAAGTTGAAGAACATGTCGGCACTCGTACCGCACAACAGTGTATTCGCAGATTCTTGGAATTACCG ATCGAGGATCCGTATCTACAAACGGAAGGAAATATGGGTCCTCTTCGATTCGGCAGAATACCTTTTGACCAGGCA GATAATCCTATTATGAGCGTTGTGGCTTTCCTTGCGGGCGTCGTCAACTCGAGCGTGGCTGCTGAAGCTGCCAAG ACGGCCTTGAAAGAATTGACGGATGGAGAAAGTGGGAAGAAGTCGGAGAAAGGTGAAGGGGAGAAGAAAGACGAG GATAAGATGGACGAGGATGTACCTTCATCTCGTCAGAGTCCTCCCGAATCTGCTTCCTCTTCTGATCCCACAAAA ATCAGCACAACCACGACGACGACAATGACATCCACGACAACGACAACCCACACCCTCCCTCACTCTCAAGTTCAA AGAGCGGCTCATCTCGCTCTCAGCGCTTCAGCTAAAGCAGCCCAAAATCTCGCCACAGCCGAAGATCAACAAATC CGGGGCACACTGTCCAACCTCATCAAACTGACTTTGACAAAGTTGGAAATTAAAATGTCGCAATTTGAGGAATTG GAGGAGATATTGGAGGAGGAGAGGAGGAATTTGGAGAGTGCGAGGGTTGCGTTGGTGAATGAGAGGTTGGGGTTG AAGAAGATGTTGGATACGGTTAGAGGGGAGGTTGTTCGACATCAACAACAGCAGCAGCAGCAGCAATTGGCTGTG GCTACTGGTGGACCGTCGTCGTCAGCATCTCAACAACAACAACAACCGGGGTTTTCGCAAGGCGTGATTAATGCT GCGACGAATCCGGGTATGGCGTTGGGGATGAGTGGACAAGGACCGATTGTGAATGAAGTACAATCTTCGGCTATG AATGTAGAAGGTGGTGAGGGTCCTGTACAGGATGGGCAGACGTTACAGTTGAGTTGA |
Transcript | >AgabiH97|110530 ATGGACTCGCCAAAACGCGCTGGCTCTGCAACTCCCCAGAACGACCCCAAGCGCATCAAGCTCGCCGTCAACCAC GGCGCTACCCCCGTCGACCCCGACAACGCCCCCGGGAAGCGCAACGAGCAGGACCCCATCCAGTCCACCGACATC GCAAACCTCCACCCCGAAAATGCCCCGACCCACGACCCCCCGCCGTCTGTCCGCGTCAGGCAGCTCAAAGACGGC GAGGAGGACGAACCTGGTGACGTGTCCATGGCCGACGGCGCTGACGATGACGGCGACTCGGCGGACGACAACGAC GACGAAGACCCTGCCCAGCTCGAGGCTACCCGTCTGCGTCTCGAAGAGCAGGCGCGCAAGTATCTGGCCGCCCAG ACCCACGAAATCATCATCCCAAGCTATTCCAATTGGTTTGACATGTCCAAAATCCACCCCGTCGAAAGACGAGCC GTCCCCGAATTTTTCAACTCGCGCAACCGTTCAAAGACTCCGTCCATATACAAGGACTACCGCGACTTTATGATC AACACCTACCGTCTCCGCCCCACAGAGTATCTCACTGTCACCGCCTGCCGTAGAAATCTGGCCGGCGACGTCTGT GCTATCATGCGCGTACACGCCTTTCTCGAGCAATGGGGCCTGATCAACTACCAGATCGACCCCGAGCAACGCCCA GCAGCCCTTTCTCCTCCCTTCACTGGCCACTTCCGCGTCATCCTCGACACCCCACGCGGCCTCCAGTCCCTCCAC CCCGGCACGCGACCTTCCGTTCCAAACGCCACCGCTGGTGGGGCACCTGCCAATGTAAAAGCGCCTTCAGCCACC CCAGCCTCTCTCGAACTTCGTTCCTCCATCTACCAAACCACATCCAAATCCTCCAAGGCCCTCTCTTCCGCCGAA GCCACGACTCTCGCAAATGGCGCTTCCAACGGCACTTCGCATACTCCACAGCACACACATACGTGTGACGTTTGT GGTGCAGATTGTTCTCAAGTCCGTTATCACTGCCTAAAAGACAAAAAACTTGAAGTTTGCGCCCCTTGTTATCTT GATGGTCGCTTCCCATCGACGCTTTTCTCTGGGGATTTCGTCAAATTAACGACAGCGCCACCTGGTATCGCTGGT GCTTCTTCCGCGAACAACGATTGGTCCGACCAAGAAACCCTTCTTCTACTGGAAGGTGTCGAAATGTACGATGAC GATTGGTCAAAAGTTGAAGAACATGTCGGCACTCGTACCGCACAACAGTGTATTCGCAGATTCTTGGAATTACCG ATCGAGGATCCGTATCTACAAACGGAAGGAAATATGGGTCCTCTTCGATTCGGCAGAATACCTTTTGACCAGGCA GATAATCCTATTATGAGCGTTGTGGCTTTCCTTGCGGGCGTCGTCAACTCGAGCGTGGCTGCTGAAGCTGCCAAG ACGGCCTTGAAAGAATTGACGGATGGAGAAAGTGGGAAGAAGTCGGAGAAAGGTGAAGGGGAGAAGAAAGACGAG GATAAGATGGACGAGGATGTACCTTCATCTCGTCAGAGTCCTCCCGAATCTGCTTCCTCTTCTGATCCCACAAAA ATCAGCACAACCACGACGACGACAATGACATCCACGACAACGACAACCCACACCCTCCCTCACTCTCAAGTTCAA AGAGCGGCTCATCTCGCTCTCAGCGCTTCAGCTAAAGCAGCCCAAAATCTCGCCACAGCCGAAGATCAACAAATC CGGGGCACACTGTCCAACCTCATCAAACTGACTTTGACAAAGTTGGAAATTAAAATGTCGCAATTTGAGGAATTG GAGGAGATATTGGAGGAGGAGAGGAGGAATTTGGAGAGTGCGAGGGTTGCGTTGGTGAATGAGAGGTTGGGGTTG AAGAAGATGTTGGATACGGTTAGAGGGGAGGTTGTTCGACATCAACAACAGCAGCAGCAGCAGCAATTGGCTGTG GCTACTGGTGGACCGTCGTCGTCAGCATCTCAACAACAACAACAACCGGGGTTTTCGCAAGGCGTGATTAATGCT GCGACGAATCCGGGTATGGCGTTGGGGATGAGTGGACAAGGACCGATTGTGAATGAAGTACAATCTTCGGCTATG AATGTAGAAGGTGGTGAGGGTCCTGTACAGGATGGGCAGACGTTACAGTTGAGTTGA |
Gene | >AgabiH97|110530 ATGGACTCGCCAAAACGCGCTGGCTCTGCAACTCCCCAGAACGACCCCAAGCGCATCAAGCTCGCCGTCAACCAC GGCGCTACCCCCGTCGACCCCGACAACGCCCCCGGGAAGCGCAACGAGCAGGACCCCATCCAGTCCACCGACATC GCAAACCTCCACCCCGAAAATGCCCCGACCCACGACCCCCCGCCGTCTGTCCGCGTCAGGCAGCTCAAAGACGGC GAGGAGGACGAACCTGGTGACGTGTCCATGGCCGACGGCGCTGACGATGACGGCGACTCGGCGGACGACAACGAC GACGAAGACCCTGCCCAGCTCGAGGCTACCCGTCTGCGTCTCGAAGAGCAGGCGCGCAAGTATCTGGCCGCCCAG ACCCACGAAATCATCATCCCAAGCTATTCCAATTGGTTTGACATGTCCAAAATCCACCCCGTCGAAAGACGAGCC GTCCCCGAATTTTTCAACTCGCGCAACCGTTCAAAGACTCCGTCCATATACAAGGACTACCGCGACTTTATGATC AACACCTACCGTCTCCGCCCCACAGAGTATCTCACTGTCACCGCCTGCCGTAGAAATCTGGCCGGCGACGTCTGT GCTATCATGCGCGTACACGCCTTTCTCGAGCAATGGGGCCTGATCAACTACCAGGTTAGATTCATGTTCTTCATC TCTCACATTAGACCTTATTTTTCATTCATTAGATCGACCCCGAGCAACGCCCAGCAGCCCTTTCTCCTCCCTTCA CTGGCCACTTCCGCGTCATCCTCGACACCCCACGCGGCCTCCAGTCCCTCCACCCCGGCACGCGACCTTCCGTTC CAAACGCCACCGCTGGTGGGGCACCTGCCAATGTAAAAGCGCCTTCAGCCACCCCAGCCTCTCTCGAACTTCGTT CCTCCATCTACCAAACCACATCCAAATCCTCCAAGGCCCTCTCTTCCGCCGAAGCCACGACTCTCGCAAATGGCG CTTCCAACGGCACTTCGCATACTCCACAGCACACACATACGTGTGACGTTTGTGGTGCAGATTGTTCTCAAGTCC GTTATCACTGCCTAAAAGACAAAAAACTTGAAGTTTGCGCCCCTTGTTATCTTGATGGTCGCTTCCCATCGACGC TTTTCTCTGGGGATTTCGTCAAATTAACGACAGCGCCACCTGGTATCGCTGGTGCTTCTTCCGCGAACAACGATT GGTCCGACCAAGAAACCCTTCTTCTACTGGAAGGTGTCGAAATGTACGATGACGATTGGTCAAAAGTTGAAGAAC ATGTCGGCACTCGTACCGCACAACAGTGTATTCGCAGATTCTTGGAATTACCGATCGAGGATCCGTATCTACAAA CGGAAGGAAATATGGGTCCTCTTCGATTCGGCAGAATACCTTTTGACCAGGCAGATAATCCTATTATGAGCGTTG TGGCTTTCCTTGCGGGCGTCGTCAACTCGAGCGTGGCTGCTGAAGCTGCCAAGACGGCCTTGAAAGAATTGACGG ATGGAGAAAGTGGGAAGAAGTCGGAGAAAGGTGAAGGGGAGAAGAAAGACGAGGATAAGATGGACGAGGATGTAC CTTCATCTCGTCAGAGTCCTCCCGAATCTGCTTCCTCTTCTGATCCCACAAAAATCAGCACAACCACGACGACGA CAATGACATCCACGACAACGACAACCCACACCCTCCCTCACTCTCAAGTTCAAAGAGCGGCTCATCTCGCTCTCA GCGCTTCAGCTAAAGCAGCCCAAAATCTCGCCACAGCCGAAGATCAACAAATCCGGGGCACACTGTCCAACCTCA TCAAACTGACTTTGACAAAGTTGGAAATTAAAATGTCGCAATTTGAGGAATTGGAGGAGATATTGGAGGAGGAGA GGAGGAATTTGGAGAGTGCGAGGGTTGCGTTGGTGAATGAGAGGTTGGGGTTGAAGAAGATGTTGGATACGGTTA GAGGGGAGGTTGTTCGACATCAACAACAGCAGCAGCAGCAGCAATTGGCTGTGGCTACTGGTGGACCGTCGTCGT CAGCATCTCAACAACAACAACAACCGGGGTTTTCGCAAGGCGTGATTAATGCTGCGACGAATCCGGGTATGGCGT TGGGGATGAGTGGACAAGGACCGATTGTGAATGAAGTACAATCTTCGGCTATGAATGTAGAAGGTGGTGAGGGTC CTGTACAGGATGGGCAGACGTTACAGTTGAGTTGA |