Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|109590
Gene name
Locationscaffold_8:845629..846406
Strand-
Gene length (bp)777
Transcript length (bp)330
Coding sequence length (bp)330
Protein length (aa) 110

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13656 RNA_pol_L_2 RNA polymerase Rpb3/Rpb11 dimerisation domain 2.2E-29 22 94
PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain 2.7E-10 23 89

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 8 105 8.0E-30
sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc19 PE=2 SV=1 8 90 1.0E-28
sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1 1 93 1.0E-23
sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1 3 93 3.0E-22
sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1 3 93 7.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1 8 105 8.0E-30
sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc19 PE=2 SV=1 8 90 1.0E-28
sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1 1 93 1.0E-23
sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1 3 93 3.0E-22
sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1 3 93 7.0E-22
sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=1 SV=1 9 94 1.0E-21
sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1 9 93 4.0E-21
sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19 OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1 22 91 1.0E-19
sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1 20 94 6.0E-15
sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Caenorhabditis briggsae GN=rpac-19 PE=3 SV=1 5 91 1.0E-14
sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=3 SV=1 20 102 3.0E-14
sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1 20 108 4.0E-14
sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2 OS=Caenorhabditis elegans GN=rpac-19 PE=3 SV=1 5 91 2.0E-13
sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=1 SV=1 20 102 2.0E-13
sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1 20 108 2.0E-13
sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1 20 102 4.0E-13
sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1 20 102 4.0E-13
sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2 20 102 6.0E-13
sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=2 20 107 6.0E-13
sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1 20 107 2.0E-12
sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1 24 83 4.0E-11
sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1 20 85 7.0E-09
sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1 19 86 9.0E-09
sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpoL PE=3 SV=1 24 83 1.0E-08
sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1 24 67 1.0E-06
sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb11 PE=1 SV=1 6 105 1.0E-06
sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium chabaudi GN=PC000833.03.0 PE=3 SV=1 24 82 3.0E-06
sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL PE=1 SV=1 24 85 4.0E-06
sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1 24 67 5.0E-06
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GO

GO Term Description Terminal node
GO:0006351 transcription, DNA-templated Yes
GO:0046983 protein dimerization activity Yes
GO:0003899 DNA-directed 5'-3' RNA polymerase activity Yes
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008152 metabolic process No
GO:0019438 aromatic compound biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0008150 biological_process No
GO:0016779 nucleotidyltransferase activity No
GO:0071704 organic substance metabolic process No
GO:0140098 catalytic activity, acting on RNA No
GO:1901360 organic cyclic compound metabolic process No
GO:0005488 binding No
GO:0009058 biosynthetic process No
GO:0016070 RNA metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0034062 5'-3' RNA polymerase activity No
GO:0044249 cellular biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0003824 catalytic activity No
GO:0009987 cellular process No
GO:0032774 RNA biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0097747 RNA polymerase activity No
GO:0003674 molecular_function No
GO:0009059 macromolecule biosynthetic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0016740 transferase activity No
GO:0018130 heterocycle biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005515 protein binding No
GO:0043170 macromolecule metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|109590
MAAESVPKIKLLEGASADLSAATFQIHDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENVINVRIQMYDNISSF
DALISALDNLDHLCETTLMARRWHHGIYSLTISR*
Coding >AgabiH97|109590
ATGGCGGCGGAGTCAGTCCCAAAAATCAAATTGCTTGAAGGCGCTAGTGCGGACCTCTCGGCAGCGACCTTCCAG
ATTCACGATGAATCCCACACAATGGGTAATGCTCTCAGATGGATGCTTATGAAAAATCCTAAAGTGGAATTCTGC
GGATACAGTGTTCCCCATCCTTCGGAAAACGTCATCAATGTTCGGATTCAGATGTACGATAATATATCATCCTTT
GATGCTCTCATATCTGCTCTTGACAATCTGGACCACCTTTGCGAAACAACACTGATGGCTCGTCGCTGGCATCAT
GGTATCTATTCATTAACCATCTCTCGCTGA
Transcript >AgabiH97|109590
ATGGCGGCGGAGTCAGTCCCAAAAATCAAATTGCTTGAAGGCGCTAGTGCGGACCTCTCGGCAGCGACCTTCCAG
ATTCACGATGAATCCCACACAATGGGTAATGCTCTCAGATGGATGCTTATGAAAAATCCTAAAGTGGAATTCTGC
GGATACAGTGTTCCCCATCCTTCGGAAAACGTCATCAATGTTCGGATTCAGATGTACGATAATATATCATCCTTT
GATGCTCTCATATCTGCTCTTGACAATCTGGACCACCTTTGCGAAACAACACTGATGGCTCGTCGCTGGCATCAT
GGTATCTATTCATTAACCATCTCTCGCTGA
Gene >AgabiH97|109590
ATGGCGGCGGAGTCAGTCCCAAAAATCAAATTGGTGAGCTCTCCTCTTGCTCTCCTCTTGCTTACTGTCTGAGCT
TTAAGTGTCTACGTTTCGACTTTAGCTTGAAGGCGCTAGTGCGGACCTCTCGGCAGCGACCTTCCAGATTCACGA
TGAATCCCACACAATGGGTAATGCTCTCAGATGGATGCTTATGAAAAAGTGCGCCACTACTTGTCTTTGACAACT
TTTTATGGTGTACTGACAAGAAGTGAAGTCCTAAAGTGGAATTCTGCGGATACAGGTGATTTATTGGTTTATTAT
GGCCCCATTGTTTTCCGTGGAACCATTTTTACTCCATTGAAGCTTCCATGCGACAACTGCGGAAATCTCACTGTG
TATCTTGTTCCATTACCGGAAATCTGACTCATGTCGTTTTTGTTCACAGTGTTCCCCATCCTTCGGAAAACGTCA
TCAATGTTCGGATTCAGATGTACGGTGAGTCCCTTCCATCGTCACTCCACAATTCCTCGCGGCCTGATTGGAAGT
AACAATTTTTAGATAATATATCATCCTTTGATGCTCTCATATCTGCTCTTGACAATCTGGACCACCTTTGCGAGT
CTATCGAGGATGCATATCTGGAGAGTCTACGGGCTGGCCGGTTTGAACGCTGGGAAGAACAACACTGATGGCTCG
TCGCTGGCATCATGGTATCTATTCATTGTATGTATACAATATTTTTCGTATCTTATCGAATGATACATGTGTTCT
TTCCTCTGCAGAACCATCTCTCGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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