© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|108540 |
| Gene name | |
| Location | scaffold_8:581289..583277 |
| Strand | + |
| Gene length (bp) | 1988 |
| Transcript length (bp) | 1353 |
| Coding sequence length (bp) | 1353 |
| Protein length (aa) | 451 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 3.1E-15 | 66 | 315 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q08280|BSC6_YEAST | Bypass of stop codon protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BSC6 PE=1 SV=1 | 41 | 443 | 2.0E-28 |
| sp|O07563|GLCP_BACSU | Glucose/mannose transporter GlcP OS=Bacillus subtilis (strain 168) GN=glcP PE=1 SV=1 | 79 | 413 | 7.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 79 | 18 |
| 2 | 94 | 116 | 22 |
| 3 | 123 | 142 | 19 |
| 4 | 152 | 174 | 22 |
| 5 | 187 | 209 | 22 |
| 6 | 214 | 236 | 22 |
| 7 | 272 | 294 | 22 |
| 8 | 304 | 326 | 22 |
| 9 | 333 | 355 | 22 |
| 10 | 360 | 382 | 22 |
| 11 | 389 | 411 | 22 |
| 12 | 421 | 443 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|108540 MSEERDNVGKIEVISKTAGSNGMIVTNHAMTVDDGKIEELEIADTSKLDIRTKKQKSTERIHCSALCLGNFIFGW NDGSTGPLLPRIQETYDVGFTVVSLIFIFACVGIICGALVNVYLTDRLGFGRIIALGAALQVIAYALESSGSPFP VFVMAFAINGCGNGLQGAQANAFIASLKHNSEAKMGLLHAAYGAGALTAPLIATQFAQLPRWSFHYLVSVGIAFC NVILLLVVFRFKTREECFSMFGQKATESGEDEQSSLKRILRAKSVHFLAFFVLAYVGVEVTIGGWIVTFMLNVRG GGPSAGYISSGFFGGLMLGRVLLLWVNKKLGERLAIYLYTLLCIGLEIVVWLAPSLIGGAVAVSFVGLFLGPMFP IAMIHAGRILPKWLLTGSIGWIAGFGSAGSAAVPFLTGAISSKHGIQSLQPLLIAMMGCMLVLWYIVPSNSKRSD * |
| Coding | >AgabiH97|108540 ATGTCTGAAGAGCGCGACAATGTCGGAAAAATTGAAGTCATTTCAAAGACAGCCGGTTCAAACGGGATGATTGTC ACCAATCATGCGATGACCGTGGACGACGGGAAAATAGAAGAACTAGAGATAGCAGATACAAGTAAGCTGGATATC AGGACCAAGAAGCAGAAATCAACAGAAAGGATTCACTGCTCGGCGTTGTGTTTGGGCAACTTCATATTCGGATGG AATGATGGTTCTACTGGGCCTTTGCTACCTCGTATACAGGAAACCTATGACGTTGGTTTTACTGTTGTATCTCTG ATTTTCATTTTCGCCTGCGTTGGAATCATTTGCGGTGCTCTCGTCAACGTTTATCTAACAGATCGTCTTGGATTC GGCAGGATTATCGCGCTTGGCGCTGCTCTACAAGTCATAGCGTATGCTCTTGAATCATCGGGATCTCCCTTTCCT GTATTCGTCATGGCTTTCGCTATCAATGGCTGTGGCAACGGCCTTCAGGGAGCACAAGCTAACGCTTTCATTGCG AGCCTTAAACATAACTCAGAAGCGAAAATGGGTCTTCTTCACGCTGCTTATGGTGCTGGAGCTCTCACTGCACCA CTCATCGCTACACAGTTTGCGCAACTTCCACGCTGGTCTTTTCATTACTTGGTATCTGTCGGAATTGCCTTTTGC AATGTGATTCTCCTCCTAGTTGTGTTCAGGTTTAAAACTCGAGAAGAATGTTTTAGCATGTTTGGACAAAAAGCC ACGGAAAGCGGCGAGGACGAACAATCTTCCTTGAAACGGATCCTTCGTGCCAAATCTGTCCACTTCCTGGCCTTC TTTGTTCTTGCCTATGTTGGCGTTGAGGTTACGATTGGAGGCTGGATCGTCACCTTTATGCTTAACGTTCGCGGT GGTGGGCCATCCGCCGGTTATATTTCGTCAGGTTTCTTCGGCGGTCTTATGCTCGGCCGTGTTCTCCTACTCTGG GTTAACAAAAAGCTTGGTGAACGCCTCGCAATCTATCTCTACACTTTGCTCTGTATAGGGCTCGAAATCGTCGTT TGGCTTGCCCCTTCGCTCATTGGCGGAGCTGTAGCAGTGTCCTTCGTCGGTTTATTCCTTGGACCCATGTTCCCA ATCGCAATGATACACGCTGGGCGAATTCTTCCGAAATGGTTACTCACTGGATCAATTGGTTGGATAGCTGGATTT GGTTCAGCGGGGAGCGCTGCGGTTCCTTTCCTCACCGGTGCGATCTCTTCTAAGCATGGGATACAGAGTCTGCAA CCTTTATTGATTGCGATGATGGGTTGTATGTTGGTTTTGTGGTACATTGTACCCTCAAACTCCAAACGAAGTGAT TAG |
| Transcript | >AgabiH97|108540 ATGTCTGAAGAGCGCGACAATGTCGGAAAAATTGAAGTCATTTCAAAGACAGCCGGTTCAAACGGGATGATTGTC ACCAATCATGCGATGACCGTGGACGACGGGAAAATAGAAGAACTAGAGATAGCAGATACAAGTAAGCTGGATATC AGGACCAAGAAGCAGAAATCAACAGAAAGGATTCACTGCTCGGCGTTGTGTTTGGGCAACTTCATATTCGGATGG AATGATGGTTCTACTGGGCCTTTGCTACCTCGTATACAGGAAACCTATGACGTTGGTTTTACTGTTGTATCTCTG ATTTTCATTTTCGCCTGCGTTGGAATCATTTGCGGTGCTCTCGTCAACGTTTATCTAACAGATCGTCTTGGATTC GGCAGGATTATCGCGCTTGGCGCTGCTCTACAAGTCATAGCGTATGCTCTTGAATCATCGGGATCTCCCTTTCCT GTATTCGTCATGGCTTTCGCTATCAATGGCTGTGGCAACGGCCTTCAGGGAGCACAAGCTAACGCTTTCATTGCG AGCCTTAAACATAACTCAGAAGCGAAAATGGGTCTTCTTCACGCTGCTTATGGTGCTGGAGCTCTCACTGCACCA CTCATCGCTACACAGTTTGCGCAACTTCCACGCTGGTCTTTTCATTACTTGGTATCTGTCGGAATTGCCTTTTGC AATGTGATTCTCCTCCTAGTTGTGTTCAGGTTTAAAACTCGAGAAGAATGTTTTAGCATGTTTGGACAAAAAGCC ACGGAAAGCGGCGAGGACGAACAATCTTCCTTGAAACGGATCCTTCGTGCCAAATCTGTCCACTTCCTGGCCTTC TTTGTTCTTGCCTATGTTGGCGTTGAGGTTACGATTGGAGGCTGGATCGTCACCTTTATGCTTAACGTTCGCGGT GGTGGGCCATCCGCCGGTTATATTTCGTCAGGTTTCTTCGGCGGTCTTATGCTCGGCCGTGTTCTCCTACTCTGG GTTAACAAAAAGCTTGGTGAACGCCTCGCAATCTATCTCTACACTTTGCTCTGTATAGGGCTCGAAATCGTCGTT TGGCTTGCCCCTTCGCTCATTGGCGGAGCTGTAGCAGTGTCCTTCGTCGGTTTATTCCTTGGACCCATGTTCCCA ATCGCAATGATACACGCTGGGCGAATTCTTCCGAAATGGTTACTCACTGGATCAATTGGTTGGATAGCTGGATTT GGTTCAGCGGGGAGCGCTGCGGTTCCTTTCCTCACCGGTGCGATCTCTTCTAAGCATGGGATACAGAGTCTGCAA CCTTTATTGATTGCGATGATGGGTTGTATGTTGGTTTTGTGGTACATTGTACCCTCAAACTCCAAACGAAGTGAT TAG |
| Gene | >AgabiH97|108540 ATGTCTGAAGAGCGCGACAATGTCGGAAAAATTGAAGTCATTTCAAAGACAGCCGGTTCAAACGGGATGATTGTC ACCAATCATGCGATGACCGTGGACGACGGGAAAATAGAAGAACTAGAGATAGCAGATACAAGTAAGCTGGATATC AGGACCAAGAAGCAGAAATCAACAGAAAGGATTCACTGCTCGGCGTTGTGTTTGGGCAACTTCATATTCGGATGG AATGATGGTTCTACTGGGCCTTTGCTACCTCGTATACAGGAAACCTATGACGTACATTTTATTCCGCTTTACCAT CGGCTTTCAATTCAGGAATACTTATAATCAGGTTGGTTTTACTGTTGTATCTCTGATTTTCATTTTCGCCTGCGT TGTAAGTCCCCTGTTGGCCTTGTTTCGTTTCCATGACTGACACTGCACATTTTCAACAAAGGGAATCATTTGCGG TGCTCTCGTCAACGTTTATCTAACAGATCGTCTTGGATTCGGCAGGGCATGTATATTCTAGAATATTCGTCCAAC AAGAGTTACTTACAATTGCATGGCGGCTAGATTATCGCGCTTGGTACATGACATTGTTTCTCTTTTCATCCCTGT GACTAACATCAAGAAACCCAGGCGCTGCTCTACAAGTCATAGCGTATGCTCTTGAATCATCGGGATCTCCCTTTC CTGTATTCGTCATGGCTTTCGCTATCAATGGCTGTGGCAACGGCCTTCAGGTTCGCCGCATATCCTTGTCCATCC TATATCGATGATCACGACATTACAGGGAGCACAAGCTAACGCTTTCATTGCGAGCCTTAAACATAACTCAGAAGC GAAAATGGGTCTTCTTCACGCTGCTTATGGTTGCGTTACACTCGTTCTTTCATCGCTCTAGCTAATTCTTCCCAG GTGCTGGAGCTCTCACTGCACCACTCATCGCTACACAGTTTGCGCAACTTCCACGCTGGTCTTTTCATTACTTGG TATCTGTCGGAATTGCCTTTTGCAATGTGATTCTCCTCCTAGTTGTGTTCAGGTTTAAAACTCGAGAAGGTCAGA TTCGAATCATTCCCAGACCTTGTCTTATTCATACATTTCATCAGAATGTTTTAGCATGTTTGGACAAAAAGCCAC GGAAAGCGGCGAGGACGAACAATCTTCCTTGAAACGGATCCTTCGTGCCAAATCTGTCCACTTCCTGGCCTTCTT TGTTCTTGCCTATGTTGGCGTTGAGGTTACGATTGGAGGTTAGTTTCTATTTCCACGAAGGAAAGCTCAATATTG ATATTACTAGGCTGGATCGTCACCTTTATGCTTAACGTTCGCGGTGGTGGGCCATCCGCCGGTTATATTTCGTCA GGTTTCTTCGGCGGTAGGTTATATCTCATCTAGTGAAATAATGAGAGACATCTAATGCAAATTACAAGGTCTTAT GCTCGGCCGTGTTCTCCTACTCTGGGTTAACAAAAAGGTGCCACGCTTCCACACCGAGTCTTGCGCCATCCTAAT CAAATACCTAGCTTGGTGAACGCCTCGCAATCTATCTCTACACTTTGCTCTGTATAGGGTAAGTTTCTTCTCTCT GATATAGTCTAAATTCCTAGAATTATATAGGCTCGAAATCGTCGTTTGGCTTGCCCCTTCGCTCATTGGCGGAGC TGTAGCAGTGTCCTTCGTCGGTTTATTCCTTGGACCCATGTTCCCAATCGCAATGATACACGCTGGGCGAATTCT TCCGAAATGGTTACTCACTGGATCAATTGGTTGGATAGCTGGATTTGGTTCAGCGGGGAGCGCTGCGGTTCCTTT CCTCACCGGTGCGATCTCTTCTAAGCATGGGATACAGAGTCTGCAACCTTTGTGAGTGTACTTTATTTTCCACTA GTGGAATAAGCAAGCCGCTTAATTTTTCGTTTTATTCTAGATTGATTGCGATGATGGGTTGTATGTTGGTTTTGT GGTACATTGTACCCTCAAACTCCAAACGAAGTGATTAG |