Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|107580
Gene name
Location	scaffold_8:337667..338998
Strand	-
Gene length (bp)	1331
Transcript length (bp)	1122
Coding sequence length (bp)	1122
Protein length (aa)	374

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01328	Peroxidase_2	Peroxidase, family 2	8.3E-50	67	280

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|B9W4V6|APO1_AGRAE	Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1	1	373	4.0E-136
sp|B9W4V8|APO1_COPRA	Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2	49	278	2.0E-81
sp|Q00668|STCC_EMENI	Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2	58	273	2.0E-17
sp|P04963|PRXC_LEPFU	Chloroperoxidase OS=Leptoxyphium fumago GN=CPO PE=1 SV=3	68	216	7.0E-08

GO

GO Term	Description	Terminal node
GO:0004601	peroxidase activity	Yes
GO:0003674	molecular_function	No
GO:0016491	oxidoreductase activity	No
GO:0016209	antioxidant activity	No
GO:0003824	catalytic activity	No
GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	1.11	0.28	1.95
Initials	Initials knots	1.45	0.43	2.47
Pileal_Stipeal_center	Stage I stipe center	1.65	0.50	2.80
Pileal_Stipeal_shell	Stage I stipe shell	2.13	0.68	3.57
DIF_stipe_center	Stage II stipe center	1.89	0.60	3.19
DIF_stipe_shell	Stage II stipe shell	1.52	0.44	2.60
DIF_stipe_skin	Stage II stipe skin	1.71	0.53	2.89
DIF_cap_skin	Stage II cap skin	1.95	0.65	3.24
DIF_cap_tissue	Stage II cap tissue	1.95	0.65	3.24
DIF_gill_tissue	Stage II gill tissue	1.95	0.65	3.25
YFB_stipe_center	Young fruiting body stipe center	2.69	0.99	4.39
YFB_stipe_shell	Young fruiting body stipe shell	1.63	0.46	2.81
YFB_stipe_skin	Young fruiting body stipe skin	1.26	0.32	2.19
YFB_cap_skin	Young fruiting body cap skin	1.85	0.59	3.10
YFB_cap_tissue	Young fruiting body cap tissue	2.89	1.10	4.67
YFB_gill_tissue	Young fruiting body gill tissue	1.84	0.56	3.11
YFB_veil	Young fruiting body veil	2.47	0.89	4.05

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.295714	no
Casing	YFB_stipe_center	0.066395	no
Casing	YFB_stipe_shell	0.565812	no
Casing	YFB_stipe_skin	0.901376	no
Casing	YFB_cap_skin	0.383882	no
Casing	YFB_cap_tissue	0.042041	yes
Casing	YFB_gill_tissue	0.382526	no
Casing	YFB_veil	0.103317	no
Casing	Initials	0.724823	no
Casing	Pileal_Stipeal_center	0.541657	no
Casing	Pileal_Stipeal_shell	0.226490	no
Casing	DIF_stipe_center	0.358145	no
Casing	DIF_stipe_shell	0.653731	no
Casing	DIF_stipe_skin	0.494252	no
Casing	DIF_cap_skin	0.299170	no
Casing	DIF_cap_tissue	0.303729	no
DIF_gill_tissue	YFB_stipe_center	0.585339	no
DIF_gill_tissue	YFB_stipe_shell	0.822107	no
DIF_gill_tissue	YFB_stipe_skin	0.461866	no
DIF_gill_tissue	YFB_cap_skin	0.952359	no
DIF_gill_tissue	YFB_cap_tissue	0.467414	no
DIF_gill_tissue	YFB_gill_tissue	0.944518	no
DIF_gill_tissue	YFB_veil	0.717778	no
YFB_stipe_center	YFB_stipe_shell	0.363455	no
YFB_stipe_center	YFB_stipe_skin	0.126752	no
YFB_stipe_center	YFB_cap_skin	0.519221	no
YFB_stipe_center	YFB_cap_tissue	0.933183	no
YFB_stipe_center	YFB_gill_tissue	0.499546	no
YFB_stipe_center	YFB_veil	0.918318	no
YFB_stipe_shell	YFB_stipe_skin	0.731202	no
YFB_stipe_shell	YFB_cap_skin	0.889487	no
YFB_stipe_shell	YFB_cap_tissue	0.271557	no
YFB_stipe_shell	YFB_gill_tissue	0.893224	no
YFB_stipe_shell	YFB_veil	0.490356	no
YFB_stipe_skin	YFB_cap_skin	0.551227	no
YFB_stipe_skin	YFB_cap_tissue	0.085220	no
YFB_stipe_skin	YFB_gill_tissue	0.550986	no
YFB_stipe_skin	YFB_veil	0.184591	no
YFB_cap_skin	YFB_cap_tissue	0.409764	no
YFB_cap_skin	YFB_gill_tissue	0.994991	no
YFB_cap_skin	YFB_veil	0.649730	no
YFB_cap_tissue	YFB_gill_tissue	0.380708	no
YFB_cap_tissue	YFB_veil	0.826734	no
YFB_gill_tissue	YFB_veil	0.634566	no
Initials	DIF_gill_tissue	0.650384	no
Initials	YFB_stipe_center	0.196757	no
Initials	YFB_stipe_shell	0.892161	no
Initials	YFB_stipe_skin	0.871294	no
Initials	YFB_cap_skin	0.735374	no
Initials	YFB_cap_tissue	0.134148	no
Initials	YFB_gill_tissue	0.737639	no
Initials	YFB_veil	0.298885	no
Initials	Pileal_Stipeal_center	0.880582	no
Initials	Pileal_Stipeal_shell	0.532801	no
Initials	DIF_stipe_center	0.703132	no
Initials	DIF_stipe_shell	0.959147	no
Initials	DIF_stipe_skin	0.842397	no
Initials	DIF_cap_skin	0.643971	no
Initials	DIF_cap_tissue	0.649350	no
Pileal_Stipeal_center	DIF_gill_tissue	0.825138	no
Pileal_Stipeal_center	YFB_stipe_center	0.350076	no
Pileal_Stipeal_center	YFB_stipe_shell	0.994536	no
Pileal_Stipeal_center	YFB_stipe_skin	0.711846	no
Pileal_Stipeal_center	YFB_cap_skin	0.894002	no
Pileal_Stipeal_center	YFB_cap_tissue	0.254541	no
Pileal_Stipeal_center	YFB_gill_tissue	0.897215	no
Pileal_Stipeal_center	YFB_veil	0.469759	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.717354	no
Pileal_Stipeal_center	DIF_stipe_center	0.866425	no
Pileal_Stipeal_center	DIF_stipe_shell	0.929002	no
Pileal_Stipeal_center	DIF_stipe_skin	0.968595	no
Pileal_Stipeal_center	DIF_cap_skin	0.824584	no
Pileal_Stipeal_center	DIF_cap_tissue	0.825214	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.920519	no
Pileal_Stipeal_shell	YFB_stipe_center	0.730275	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.716416	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.365313	no
Pileal_Stipeal_shell	YFB_cap_skin	0.867346	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.620596	no
Pileal_Stipeal_shell	YFB_gill_tissue	0.854241	no
Pileal_Stipeal_shell	YFB_veil	0.846327	no
Pileal_Stipeal_shell	DIF_stipe_center	0.894461	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.597567	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.772059	no
Pileal_Stipeal_shell	DIF_cap_skin	0.919147	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.918236	no
DIF_stipe_center	DIF_gill_tissue	0.973313	no
DIF_stipe_center	YFB_stipe_center	0.553376	no
DIF_stipe_center	YFB_stipe_shell	0.863175	no
DIF_stipe_center	YFB_stipe_skin	0.520903	no
DIF_stipe_center	YFB_cap_skin	0.979160	no
DIF_stipe_center	YFB_cap_tissue	0.440174	no
DIF_stipe_center	YFB_gill_tissue	0.973865	no
DIF_stipe_center	YFB_veil	0.682788	no
DIF_stipe_center	DIF_stipe_shell	0.764177	no
DIF_stipe_center	DIF_stipe_skin	0.907938	no
DIF_stipe_center	DIF_cap_skin	0.976291	no
DIF_stipe_center	DIF_cap_tissue	0.975878	no
DIF_stipe_shell	DIF_gill_tissue	0.720022	no
DIF_stipe_shell	YFB_stipe_center	0.255586	no
DIF_stipe_shell	YFB_stipe_shell	0.938526	no
DIF_stipe_shell	YFB_stipe_skin	0.813752	no
DIF_stipe_shell	YFB_cap_skin	0.799856	no
DIF_stipe_shell	YFB_cap_tissue	0.183689	no
DIF_stipe_shell	YFB_gill_tissue	0.802656	no
DIF_stipe_shell	YFB_veil	0.361854	no
DIF_stipe_shell	DIF_stipe_skin	0.893250	no
DIF_stipe_shell	DIF_cap_skin	0.714238	no
DIF_stipe_shell	DIF_cap_tissue	0.718257	no
DIF_stipe_skin	DIF_gill_tissue	0.868745	no
DIF_stipe_skin	YFB_stipe_center	0.403305	no
DIF_stipe_skin	YFB_stipe_shell	0.962942	no
DIF_stipe_skin	YFB_stipe_skin	0.663349	no
DIF_stipe_skin	YFB_cap_skin	0.932759	no
DIF_stipe_skin	YFB_cap_tissue	0.297581	no
DIF_stipe_skin	YFB_gill_tissue	0.936784	no
DIF_stipe_skin	YFB_veil	0.531015	no
DIF_stipe_skin	DIF_cap_skin	0.871309	no
DIF_stipe_skin	DIF_cap_tissue	0.870950	no
DIF_cap_skin	DIF_gill_tissue	0.994825	no
DIF_cap_skin	YFB_stipe_center	0.579591	no
DIF_cap_skin	YFB_stipe_shell	0.824041	no
DIF_cap_skin	YFB_stipe_skin	0.464218	no
DIF_cap_skin	YFB_cap_skin	0.953884	no
DIF_cap_skin	YFB_cap_tissue	0.461469	no
DIF_cap_skin	YFB_gill_tissue	0.945912	no
DIF_cap_skin	YFB_veil	0.713713	no
DIF_cap_skin	DIF_cap_tissue	0.994697	no
DIF_cap_tissue	DIF_gill_tissue	0.994951	no
DIF_cap_tissue	YFB_stipe_center	0.579041	no
DIF_cap_tissue	YFB_stipe_shell	0.826072	no
DIF_cap_tissue	YFB_stipe_skin	0.468009	no
DIF_cap_tissue	YFB_cap_skin	0.955885	no
DIF_cap_tissue	YFB_cap_tissue	0.461995	no
DIF_cap_tissue	YFB_gill_tissue	0.948214	no
DIF_cap_tissue	YFB_veil	0.713353	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|107580 MVCFTYFVTLALAYAGVVSAFPAHASLAGLSRDEVDRVLASLEQATPSPPPGPLSDSGTKLVNDDLHPYKAPGEN DIRGPCPALNALASHGYINRNGIANPAEIITAVMEGFNMDHGVAVYTTYAAFIVDGNLITNLLSIGEKTSLTGRS SSGTTAGGLNTHNTFEGDSSITRMDAYFGDNHNFNEKLFQEFIEYSNKYGGGKYNLSVACEFRRKRFEDSIATNP EFTIVAPRFYTAYADAVLPINLWVDGRQDDGQLDIEAARTFFEEGRFPPDFHRAARPMGANNEMVVFEAHPIEAG SNVKGVNTYTPDHSTPQKLDDLCVQYTFHVENTVRKMYPNPEGPLLESLKINLGYLFSAVKDKGCEELFPYGR*
Coding	>AgabiH97|107580 ATGGTCTGCTTCACCTACTTCGTCACTCTTGCACTTGCTTACGCTGGAGTTGTCTCCGCGTTTCCGGCACATGCA TCTTTGGCTGGCTTGTCTAGAGACGAGGTAGACCGAGTATTGGCCAGTCTCGAGCAAGCCACTCCGTCACCGCCC CCTGGACCATTGTCGGACAGTGGCACCAAGCTTGTCAACGACGACCTTCATCCTTATAAGGCCCCGGGGGAAAAT GACATTCGGGGACCATGCCCAGCATTGAATGCACTTGCCTCCCATGGATATATCAATCGCAACGGTATTGCTAAC CCTGCAGAGATCATCACTGCGGTGATGGAAGGCTTTAACATGGACCACGGCGTGGCAGTATATACTACCTATGCT GCCTTCATCGTCGATGGCAACCTTATTACCAACCTGCTTAGCATTGGCGAGAAGACCTCTTTGACTGGTCGCTCG TCATCCGGGACTACTGCAGGCGGTTTGAACACACACAATACATTTGAGGGAGATTCAAGTATAACCCGAATGGAT GCCTACTTCGGTGACAACCATAACTTCAATGAGAAGCTATTCCAAGAGTTCATTGAATACAGCAACAAGTACGGT GGTGGAAAATACAACCTCTCCGTCGCATGCGAGTTCCGAAGGAAACGATTCGAAGATTCGATCGCCACAAATCCC GAATTCACCATCGTCGCTCCCCGGTTCTATACTGCTTATGCGGACGCCGTACTCCCTATCAATCTATGGGTAGAT GGACGTCAAGACGATGGTCAGCTTGACATCGAAGCTGCTCGTACCTTCTTCGAAGAGGGCCGTTTCCCGCCCGAT TTTCACAGAGCTGCTCGCCCCATGGGTGCCAATAATGAGATGGTGGTGTTTGAAGCTCATCCAATCGAAGCGGGA AGTAATGTGAAAGGAGTCAATACTTATACCCCCGACCATTCTACACCACAGAAGTTGGACGATCTGTGTGTGCAG TACACATTCCATGTGGAGAATACCGTGCGCAAAATGTACCCAAACCCAGAAGGTCCTTTGCTGGAATCTCTGAAG ATCAATTTGGGGTACCTGTTTAGCGCAGTTAAAGATAAGGGATGCGAAGAACTTTTCCCATATGGCAGATGA
Transcript	>AgabiH97|107580 ATGGTCTGCTTCACCTACTTCGTCACTCTTGCACTTGCTTACGCTGGAGTTGTCTCCGCGTTTCCGGCACATGCA TCTTTGGCTGGCTTGTCTAGAGACGAGGTAGACCGAGTATTGGCCAGTCTCGAGCAAGCCACTCCGTCACCGCCC CCTGGACCATTGTCGGACAGTGGCACCAAGCTTGTCAACGACGACCTTCATCCTTATAAGGCCCCGGGGGAAAAT GACATTCGGGGACCATGCCCAGCATTGAATGCACTTGCCTCCCATGGATATATCAATCGCAACGGTATTGCTAAC CCTGCAGAGATCATCACTGCGGTGATGGAAGGCTTTAACATGGACCACGGCGTGGCAGTATATACTACCTATGCT GCCTTCATCGTCGATGGCAACCTTATTACCAACCTGCTTAGCATTGGCGAGAAGACCTCTTTGACTGGTCGCTCG TCATCCGGGACTACTGCAGGCGGTTTGAACACACACAATACATTTGAGGGAGATTCAAGTATAACCCGAATGGAT GCCTACTTCGGTGACAACCATAACTTCAATGAGAAGCTATTCCAAGAGTTCATTGAATACAGCAACAAGTACGGT GGTGGAAAATACAACCTCTCCGTCGCATGCGAGTTCCGAAGGAAACGATTCGAAGATTCGATCGCCACAAATCCC GAATTCACCATCGTCGCTCCCCGGTTCTATACTGCTTATGCGGACGCCGTACTCCCTATCAATCTATGGGTAGAT GGACGTCAAGACGATGGTCAGCTTGACATCGAAGCTGCTCGTACCTTCTTCGAAGAGGGCCGTTTCCCGCCCGAT TTTCACAGAGCTGCTCGCCCCATGGGTGCCAATAATGAGATGGTGGTGTTTGAAGCTCATCCAATCGAAGCGGGA AGTAATGTGAAAGGAGTCAATACTTATACCCCCGACCATTCTACACCACAGAAGTTGGACGATCTGTGTGTGCAG TACACATTCCATGTGGAGAATACCGTGCGCAAAATGTACCCAAACCCAGAAGGTCCTTTGCTGGAATCTCTGAAG ATCAATTTGGGGTACCTGTTTAGCGCAGTTAAAGATAAGGGATGCGAAGAACTTTTCCCATATGGCAGATGA
Gene	>AgabiH97|107580 ATGGTCTGCTTCACCTACTTCGTCACTCTTGCACTTGCTTACGCTGGAGTTGTCTCCGCGTTTCCGGCACATGCA TCTTTGGCTGGCTTGTCTAGAGACGAGGTAGACCGAGTATTGGCCAGTCTCGAGCAAGCCACTCCGTCACCGCCC CCTGGACCATTGTCGGACAGTGGCACCAAGCTTGTCAACGACGACCTTCATCCTTATAAGGCCCCGGGGGAAAAT GACATTCGGGGACCATGCCCAGCATTGAATGCACTTGCCTCCCATGGAGTTCGTATAATTTTTCGAGAGATGTTC TTTGACTTACAATTTAATTATCGCAGTATATCAATCGCAACGGTATTGCTAACCCTGCAGAGATCATCACTGCGG TGATGGAAGGTATGTCTTTTTCAATCAATATTTCCAACGAGATTAATTCAACTTTCGGGCAGGCTTTAACATGGA CCACGGCGTGGCAGTATATACTACCTATGCTGCCTTCATCGTCGATGGCAACCTTATTACCAACCTGCTTAGCAT TGGCGAGAAGACCTCTTTGACTGGTCGCTCGTCATCCGGGACTACTGCAGGCGGTTTGAACACACACAATACATT TGAGGGAGATTCAAGTATAACCCGAAGTCAGTTTCACGGACTCGAGTGATTATCTTGAGACTGACTTATCTCGCC TTCAGTGGATGCCTACTTCGGTGACAACCATAACTTCAATGAGAAGCTATTCCAAGAGGTATGTTGTCCTATATA TTTTCAAGTCGCGGTGGTTGACGGCTTGGCAGTTCATTGAATACAGCAACAAGTACGGTGGTGGAAAATACAACC TCTCCGTCGCATGCGAGTTCCGAAGGAAACGATTCGAAGATTCGATCGCCACAAATCCCGAATTCACCATCGTCG CTCCCCGGTTCTATACTGCTTATGCGGACGCCGTACTCCCTATCAATCTATGGGTAGATGGACGTCAAGACGATG GTCAGCTTGACATCGAAGCTGCTCGTACCTTCTTCGAAGAGGGCCGTTTCCCGCCCGATTTTCACAGAGCTGCTC GCCCCATGGGTGCCAATAATGAGATGGTGGTGTTTGAAGCTCATCCAATCGAAGCGGGAAGTAATGTGAAAGGAG TCAATACTTATACCCCCGACCATTCTACACCACAGAAGTTGGACGATCTGTGTGTGCAGTACACATTCCATGTGG AGAATACCGTGCGCAAAATGTACCCAAACCCAGAAGGTCCTTTGCTGGAATCTCTGAAGATCAATTTGGGGTACC TGTTTAGCGCAGTTAAAGATAAGGGATGCGAAGAACTTTTCCCATATGGCAGATGA