© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|107440 |
| Gene name | |
| Location | scaffold_8:289456..291500 |
| Strand | - |
| Gene length (bp) | 2044 |
| Transcript length (bp) | 1932 |
| Coding sequence length (bp) | 1932 |
| Protein length (aa) | 644 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 4.0E-21 | 298 | 633 |
| PF00155 | Aminotran_1_2 | Aminotransferase class I and II | 2.4E-05 | 354 | 466 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 5 | 637 | 1.0E-161 |
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 5 | 632 | 1.0E-160 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 1 | 635 | 8.0E-132 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 1 | 632 | 3.0E-120 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 281 | 641 | 8.0E-71 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38675|MET7_NEUCR | Cystathionine gamma-synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-7 PE=3 SV=3 | 5 | 637 | 1.0E-161 |
| sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 5 | 632 | 1.0E-160 |
| sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 1 | 635 | 8.0E-132 |
| sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 1 | 632 | 3.0E-120 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 281 | 641 | 8.0E-71 |
| sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 298 | 633 | 3.0E-17 |
| sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 372 | 626 | 5.0E-16 |
| sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 372 | 626 | 1.0E-14 |
| sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 372 | 626 | 2.0E-14 |
| sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 354 | 633 | 1.0E-13 |
| sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 354 | 633 | 1.0E-13 |
| sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 372 | 633 | 1.0E-13 |
| sp|Q12198|METW_YEAST | Putative cystathionine gamma-synthase YLL058W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLL058W PE=1 SV=1 | 3 | 166 | 3.0E-12 |
| sp|P13254|MEGL_PSEPU | Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | 303 | 635 | 2.0E-09 |
| sp|P55216|CGL2_CAEEL | Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=3 SV=1 | 324 | 635 | 1.0E-08 |
| sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 316 | 635 | 3.0E-07 |
| sp|O31631|METI_BACSU | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase OS=Bacillus subtilis (strain 168) GN=metI PE=1 SV=1 | 373 | 640 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009058 | biosynthetic process | Yes |
| GO:0019346 | transsulfuration | Yes |
| GO:0030170 | pyridoxal phosphate binding | Yes |
| GO:0070279 | vitamin B6 binding | No |
| GO:0043168 | anion binding | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0009069 | serine family amino acid metabolic process | No |
| GO:0005488 | binding | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0036094 | small molecule binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009092 | homoserine metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0000096 | sulfur amino acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0050667 | homocysteine metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0006534 | cysteine metabolic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|107440 MSVALGLGVPPHTPHAISVSLPTWKDNVGYEEGEKRVVNSMVNGYPRFFIHLSIRKLADICQHKYAVGNEECMLF PTRRIAEECRDFVRRRTLQLGRQPVQPRLVHLFICPQTSGSQPSAPLATTNTADLHIVLYPSDESSIAREFWQHT GFGISSRLAERCLSLLPHETKPLDVHTSPAPIARFPMKGGYNNRYSVKGLKTVGASPPQEFSPMETPASAEDLSS DHSTYVEERYGRNLPIAAAALAKRALRRRVAGTLIKDNWSDTDCGGVPCAGQESVKTGPSSRGVASVTEDDVYLF PCGMTAIWSAHQLARQVRPEGKSVCFGFPYTDTLKVLRKWGPGAHFLGNGLDEDIDALEKLLESESKSDPSKPPV LALFAEFPSNPLLRSANLPRLRALADKYDFLIVVDETIGNFVNVDVLKYTDIVVSSLTKVFSGSSNVMGGSLVLN PQSQHYTALKSQLSETYEDTYFDGDAVYIERNSRDFKRRIKIIDDNTTAVCDFLRSRSIVGGSTSSQTAIKNVFY PKYITRENYDVCRVKPSPSLPSGGGFGGLFALTFTSPSASEAFFDALQVQKGPSLGTNFTLACPYTILAHYAELD WAEEFGVERGIVRVSVGMEERDTLLDVFGNALKVAEEAVAKGL* |
| Coding | >AgabiH97|107440 ATGTCTGTTGCTCTTGGACTTGGTGTGCCTCCGCACACCCCCCATGCAATTTCCGTCTCTCTGCCTACCTGGAAG GACAATGTTGGTTATGAAGAGGGCGAGAAACGGGTAGTCAACAGCATGGTCAATGGCTATCCCCGCTTTTTCATT CATCTCTCCATCAGGAAACTCGCAGATATCTGCCAACACAAGTATGCCGTGGGCAACGAAGAATGCATGCTCTTT CCTACCCGAAGGATCGCAGAAGAATGCAGAGACTTTGTCAGACGCCGTACTCTTCAGCTCGGTCGTCAGCCCGTC CAGCCCCGGCTCGTTCATCTTTTCATCTGTCCTCAAACTTCCGGCTCACAACCATCTGCACCGCTTGCTACGACC AATACGGCCGATTTGCATATTGTGCTGTATCCAAGTGACGAGTCGTCCATCGCGAGAGAGTTCTGGCAGCATACT GGCTTTGGAATCTCCTCACGCCTCGCAGAGAGATGTCTCTCGCTCCTCCCTCATGAAACAAAACCGTTGGACGTT CATACTTCACCAGCTCCGATTGCTCGCTTTCCGATGAAAGGAGGTTATAACAACCGTTATTCCGTCAAAGGTCTG AAGACTGTCGGCGCATCTCCACCGCAAGAATTCTCGCCAATGGAAACCCCAGCTTCAGCTGAAGACCTCTCCTCT GATCACTCGACATACGTTGAAGAACGTTACGGCCGCAATCTACCTATCGCGGCTGCTGCATTGGCTAAAAGAGCG TTACGTCGTCGCGTCGCGGGGACGCTGATCAAAGATAATTGGAGTGATACGGATTGCGGTGGTGTACCGTGTGCG GGGCAAGAAAGTGTCAAAACCGGTCCTAGCTCAAGAGGCGTGGCCAGTGTGACGGAAGATGATGTATACCTATTT CCCTGTGGAATGACGGCGATCTGGAGTGCACATCAACTTGCGAGACAGGTTAGGCCTGAAGGCAAGAGTGTCTGC TTCGGGTTCCCGTACACTGACACTCTGAAAGTTTTGCGAAAGTGGGGACCTGGGGCTCATTTTCTTGGAAATGGA CTCGATGAGGATATTGATGCACTCGAGAAACTCCTTGAATCCGAATCTAAAAGCGACCCTTCCAAGCCGCCTGTC CTTGCTCTCTTTGCAGAGTTCCCGTCCAACCCATTGCTCAGATCAGCCAATCTGCCGAGACTCAGGGCGCTTGCT GATAAATACGACTTCTTGATTGTCGTGGATGAGACCATTGGTAACTTTGTCAACGTTGACGTCTTGAAGTACACG GATATCGTTGTGAGTAGTTTGACTAAAGTATTCAGTGGATCGAGCAACGTGATGGGTGGAAGCCTTGTACTCAAT CCTCAAAGTCAACATTATACTGCTCTCAAATCTCAGCTTTCCGAGACCTACGAAGATACCTACTTTGACGGAGAT GCGGTTTACATAGAACGTAATTCTCGCGATTTCAAACGTCGTATCAAGATCATCGACGACAATACCACTGCTGTC TGCGATTTTCTCCGCTCACGCTCTATTGTTGGAGGATCGACTTCCTCGCAGACTGCCATCAAAAACGTCTTTTAC CCAAAATATATCACGCGCGAAAACTACGACGTTTGTCGCGTCAAACCTTCACCCTCACTTCCTTCAGGTGGCGGT TTCGGCGGTCTATTTGCCCTCACATTTACATCTCCTTCGGCATCCGAGGCGTTCTTCGATGCCTTACAAGTGCAA AAGGGACCGAGTTTGGGAACGAACTTTACGTTGGCGTGTCCATATACGATTTTGGCGCACTATGCAGAGTTGGAT TGGGCGGAGGAGTTTGGAGTAGAGAGGGGGATTGTGAGAGTGAGTGTTGGGATGGAGGAGAGAGATACGTTGCTT GATGTGTTTGGGAACGCTCTCAAGGTTGCTGAAGAGGCTGTTGCAAAGGGTTTGTGA |
| Transcript | >AgabiH97|107440 ATGTCTGTTGCTCTTGGACTTGGTGTGCCTCCGCACACCCCCCATGCAATTTCCGTCTCTCTGCCTACCTGGAAG GACAATGTTGGTTATGAAGAGGGCGAGAAACGGGTAGTCAACAGCATGGTCAATGGCTATCCCCGCTTTTTCATT CATCTCTCCATCAGGAAACTCGCAGATATCTGCCAACACAAGTATGCCGTGGGCAACGAAGAATGCATGCTCTTT CCTACCCGAAGGATCGCAGAAGAATGCAGAGACTTTGTCAGACGCCGTACTCTTCAGCTCGGTCGTCAGCCCGTC CAGCCCCGGCTCGTTCATCTTTTCATCTGTCCTCAAACTTCCGGCTCACAACCATCTGCACCGCTTGCTACGACC AATACGGCCGATTTGCATATTGTGCTGTATCCAAGTGACGAGTCGTCCATCGCGAGAGAGTTCTGGCAGCATACT GGCTTTGGAATCTCCTCACGCCTCGCAGAGAGATGTCTCTCGCTCCTCCCTCATGAAACAAAACCGTTGGACGTT CATACTTCACCAGCTCCGATTGCTCGCTTTCCGATGAAAGGAGGTTATAACAACCGTTATTCCGTCAAAGGTCTG AAGACTGTCGGCGCATCTCCACCGCAAGAATTCTCGCCAATGGAAACCCCAGCTTCAGCTGAAGACCTCTCCTCT GATCACTCGACATACGTTGAAGAACGTTACGGCCGCAATCTACCTATCGCGGCTGCTGCATTGGCTAAAAGAGCG TTACGTCGTCGCGTCGCGGGGACGCTGATCAAAGATAATTGGAGTGATACGGATTGCGGTGGTGTACCGTGTGCG GGGCAAGAAAGTGTCAAAACCGGTCCTAGCTCAAGAGGCGTGGCCAGTGTGACGGAAGATGATGTATACCTATTT CCCTGTGGAATGACGGCGATCTGGAGTGCACATCAACTTGCGAGACAGGTTAGGCCTGAAGGCAAGAGTGTCTGC TTCGGGTTCCCGTACACTGACACTCTGAAAGTTTTGCGAAAGTGGGGACCTGGGGCTCATTTTCTTGGAAATGGA CTCGATGAGGATATTGATGCACTCGAGAAACTCCTTGAATCCGAATCTAAAAGCGACCCTTCCAAGCCGCCTGTC CTTGCTCTCTTTGCAGAGTTCCCGTCCAACCCATTGCTCAGATCAGCCAATCTGCCGAGACTCAGGGCGCTTGCT GATAAATACGACTTCTTGATTGTCGTGGATGAGACCATTGGTAACTTTGTCAACGTTGACGTCTTGAAGTACACG GATATCGTTGTGAGTAGTTTGACTAAAGTATTCAGTGGATCGAGCAACGTGATGGGTGGAAGCCTTGTACTCAAT CCTCAAAGTCAACATTATACTGCTCTCAAATCTCAGCTTTCCGAGACCTACGAAGATACCTACTTTGACGGAGAT GCGGTTTACATAGAACGTAATTCTCGCGATTTCAAACGTCGTATCAAGATCATCGACGACAATACCACTGCTGTC TGCGATTTTCTCCGCTCACGCTCTATTGTTGGAGGATCGACTTCCTCGCAGACTGCCATCAAAAACGTCTTTTAC CCAAAATATATCACGCGCGAAAACTACGACGTTTGTCGCGTCAAACCTTCACCCTCACTTCCTTCAGGTGGCGGT TTCGGCGGTCTATTTGCCCTCACATTTACATCTCCTTCGGCATCCGAGGCGTTCTTCGATGCCTTACAAGTGCAA AAGGGACCGAGTTTGGGAACGAACTTTACGTTGGCGTGTCCATATACGATTTTGGCGCACTATGCAGAGTTGGAT TGGGCGGAGGAGTTTGGAGTAGAGAGGGGGATTGTGAGAGTGAGTGTTGGGATGGAGGAGAGAGATACGTTGCTT GATGTGTTTGGGAACGCTCTCAAGGTTGCTGAAGAGGCTGTTGCAAAGGGTTTGTGA |
| Gene | >AgabiH97|107440 ATGTCTGTTGCTCTTGGACTTGGTGTGCCTCCGCACACCCCCCATGCAATTTCCGTCTCTCTGCCTACCTGGAAG GACAATGTTGGTTATGAAGAGGGCGAGAAACGGGTAGTCAACAGCATGGTCAATGGCTATCCCCGCTTTTTCATT CATCTCTCCATCAGGAAACTCGCAGATATCTGCCAACACAAGTATGCCGTGGGCAACGAAGAATGCATGCTCTTT CCTACCCGAAGGATCGCAGAAGAATGCAGAGACTTTGTCAGACGCCGTACTCTTCAGCTCGGTCGTCAGCCCGTC CAGCCCCGGCTCGTTCATCTTTTCATCTGTCCTCAAACTTCCGGCTCACAACCATCTGCACCGCTTGCTACGACC AATACGGCCGATTTGCATATTGTGCTGTATCCAAGTGACGAGTCGTCCATCGCGAGAGAGTTCTGGCAGCATACT GGCTTTGGAATCTCCTCACGCCTCGCAGAGAGATGTCTCTCGCTCCTCCCTCATGAAACAAAACCGTTGGACGTT CATACTTCACCAGCTCCGATTGCTCGCTTTCCGATGAAAGGAGGTTATAACAACCGTTATTCCGTCAAAGGTCTG AAGACTGTCGGCGCATCTCCACCGCAAGAATTCTCGCCAATGGAAACCCCAGCTTCAGCTGAAGACCTCTCCTCT GATCACTCGACATACGTTGAAGAACGTTACGGCCGCAATCTACCTATCGCGGCTGCTGCATTGGCTAAAAGAGCG TTACGTCGTCGCGTCGCGGGGACGCTGATCAAAGATAATTGGAGTGATACGGATTGCGGTGGTGTACCGTGTGCG GGGCAAGAAAGTGTCAAAACCGGTCCTAGCTCAAGAGGCGTGGCCAGTGTGACGGAAGATGATGTATACCTATTT CCCTGTGGAATGACGGCGATCTGGAGTGCACATCAACTTGCGAGACAGGTTAGGCCTGAAGGCAAGAGTGTCTGC TTCGGGTGAGCATCTCATTTTTTTGACTTGGAAGAATACCTATATGACATTTCTTTGTACAAGGTTCCCGTACAC TGACACTCTGAAAGTTTTGCGAAAGTGGGGACCTGGGGCTCATTTTCTTGGAAATGGACTCGATGAGGATATTGA TGCACTCGAGAAACTCCTTGAATCCGAATCTAAAAGCGACCCTTCCAAGCCGCCTGTCCTTGCTCTCTTTGCAGA GTTCCCGTCCAACCCATTGCTCAGATCAGCCAATCTGCCGAGACTCAGGGCGCTTGCTGATAAATACGACTTCTT GATTGTCGTGGATGAGACCATTGGTAACTTTGTCAACGTTGACGTCTTGAAGTACACGGATATCGTTGTGAGTAG TTTGACTAAAGTATTCAGTGGATCGAGCAACGTGATGGGTGGAAGGTTCGTTCGTCACTTCCTTTTTGAAGATGA CCAAAAGCTAACCCACATTCTTAGCCTTGTACTCAATCCTCAAAGTCAACATTATACTGCTCTCAAATCTCAGCT TTCCGAGACCTACGAAGATACCTACTTTGACGGAGATGCGGTTTACATAGAACGTAATTCTCGCGATTTCAAACG TCGTATCAAGATCATCGACGACAATACCACTGCTGTCTGCGATTTTCTCCGCTCACGCTCTATTGTTGGAGGATC GACTTCCTCGCAGACTGCCATCAAAAACGTCTTTTACCCAAAATATATCACGCGCGAAAACTACGACGTTTGTCG CGTCAAACCTTCACCCTCACTTCCTTCAGGTGGCGGTTTCGGCGGTCTATTTGCCCTCACATTTACATCTCCTTC GGCATCCGAGGCGTTCTTCGATGCCTTACAAGTGCAAAAGGGACCGAGTTTGGGAACGAACTTTACGTTGGCGTG TCCATATACGATTTTGGCGCACTATGCAGAGTTGGATTGGGCGGAGGAGTTTGGAGTAGAGAGGGGGATTGTGAG AGTGAGTGTTGGGATGGAGGAGAGAGATACGTTGCTTGATGTGTTTGGGAACGCTCTCAAGGTTGCTGAAGAGGC TGTTGCAAAGGGTTTGTGA |