Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|104670
Gene name
Location	scaffold_7:1900503..1901891
Strand	-
Gene length (bp)	1388
Transcript length (bp)	945
Coding sequence length (bp)	945
Protein length (aa)	315

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	51.01	28.78	73.24
Initials	Initials knots	29.67	16.00	43.34
Pileal_Stipeal_center	Stage I stipe center	66.78	39.02	94.55
Pileal_Stipeal_shell	Stage I stipe shell	57.01	32.81	81.22
DIF_stipe_center	Stage II stipe center	74.95	44.36	105.54
DIF_stipe_shell	Stage II stipe shell	86.99	51.89	122.10
DIF_stipe_skin	Stage II stipe skin	70.29	41.45	99.13
DIF_cap_skin	Stage II cap skin	75.74	44.86	106.62
DIF_cap_tissue	Stage II cap tissue	77.37	45.90	108.84
DIF_gill_tissue	Stage II gill tissue	64.22	37.59	90.86
YFB_stipe_center	Young fruiting body stipe center	60.93	35.69	86.18
YFB_stipe_shell	Young fruiting body stipe shell	78.22	46.49	109.95
YFB_stipe_skin	Young fruiting body stipe skin	83.17	49.49	116.85
YFB_cap_skin	Young fruiting body cap skin	89.31	53.21	125.42
YFB_cap_tissue	Young fruiting body cap tissue	101.40	60.65	142.15
YFB_gill_tissue	Young fruiting body gill tissue	71.80	41.87	101.73
YFB_veil	Young fruiting body veil	70.55	41.66	99.43

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.539924	no
Casing	YFB_stipe_center	0.669030	no
Casing	YFB_stipe_shell	0.151786	no
Casing	YFB_stipe_skin	0.083669	no
Casing	YFB_cap_skin	0.037593	yes
Casing	YFB_cap_tissue	0.008457	yes
Casing	YFB_gill_tissue	0.303175	no
Casing	YFB_veil	0.323963	no
Casing	Initials	0.073585	no
Casing	Pileal_Stipeal_center	0.449570	no
Casing	Pileal_Stipeal_shell	0.821681	no
Casing	DIF_stipe_center	0.218974	no
Casing	DIF_stipe_shell	0.056170	no
Casing	DIF_stipe_skin	0.333988	no
Casing	DIF_cap_skin	0.200802	no
Casing	DIF_cap_tissue	0.164893	no
DIF_gill_tissue	YFB_stipe_center	0.922691	no
DIF_gill_tissue	YFB_stipe_shell	0.609857	no
DIF_gill_tissue	YFB_stipe_skin	0.454978	no
DIF_gill_tissue	YFB_cap_skin	0.302600	no
DIF_gill_tissue	YFB_cap_tissue	0.106659	no
DIF_gill_tissue	YFB_gill_tissue	0.814343	no
DIF_gill_tissue	YFB_veil	0.845051	no
YFB_stipe_center	YFB_stipe_shell	0.479522	no
YFB_stipe_center	YFB_stipe_skin	0.335056	no
YFB_stipe_center	YFB_cap_skin	0.202921	no
YFB_stipe_center	YFB_cap_tissue	0.063376	no
YFB_stipe_center	YFB_gill_tissue	0.697517	no
YFB_stipe_center	YFB_veil	0.730698	no
YFB_stipe_shell	YFB_stipe_skin	0.904203	no
YFB_stipe_shell	YFB_cap_skin	0.759404	no
YFB_stipe_shell	YFB_cap_tissue	0.445142	no
YFB_stipe_shell	YFB_gill_tissue	0.861100	no
YFB_stipe_shell	YFB_veil	0.823331	no
YFB_stipe_skin	YFB_cap_skin	0.891292	no
YFB_stipe_skin	YFB_cap_tissue	0.598657	no
YFB_stipe_skin	YFB_gill_tissue	0.735099	no
YFB_stipe_skin	YFB_veil	0.683703	no
YFB_cap_skin	YFB_cap_tissue	0.771994	no
YFB_cap_skin	YFB_gill_tissue	0.559149	no
YFB_cap_skin	YFB_veil	0.502497	no
YFB_cap_tissue	YFB_gill_tissue	0.264512	no
YFB_cap_tissue	YFB_veil	0.217760	no
YFB_gill_tissue	YFB_veil	0.975985	no
Initials	DIF_gill_tissue	0.004928	yes
Initials	YFB_stipe_center	0.012880	yes
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.000613	yes
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.000613	yes
Initials	YFB_gill_tissue	0.001140	yes
Initials	YFB_veil	0.001140	yes
Initials	Pileal_Stipeal_center	0.003765	yes
Initials	Pileal_Stipeal_shell	0.022111	yes
Initials	DIF_stipe_center	0.001140	yes
Initials	DIF_stipe_shell	0.000613	yes
Initials	DIF_stipe_skin	0.001140	yes
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.945387	no
Pileal_Stipeal_center	YFB_stipe_center	0.854052	no
Pileal_Stipeal_center	YFB_stipe_shell	0.705361	no
Pileal_Stipeal_center	YFB_stipe_skin	0.549195	no
Pileal_Stipeal_center	YFB_cap_skin	0.385213	no
Pileal_Stipeal_center	YFB_cap_tissue	0.153274	no
Pileal_Stipeal_center	YFB_gill_tissue	0.890544	no
Pileal_Stipeal_center	YFB_veil	0.918284	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.712513	no
Pileal_Stipeal_center	DIF_stipe_center	0.799248	no
Pileal_Stipeal_center	DIF_stipe_shell	0.448926	no
Pileal_Stipeal_center	DIF_stipe_skin	0.926350	no
Pileal_Stipeal_center	DIF_cap_skin	0.778800	no
Pileal_Stipeal_center	DIF_cap_tissue	0.729074	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.799856	no
Pileal_Stipeal_shell	YFB_stipe_center	0.900812	no
Pileal_Stipeal_shell	YFB_stipe_shell	0.340545	no
Pileal_Stipeal_shell	YFB_stipe_skin	0.221819	no
Pileal_Stipeal_shell	YFB_cap_skin	0.129541	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.035309	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.543667	no
Pileal_Stipeal_shell	YFB_veil	0.575999	no
Pileal_Stipeal_shell	DIF_stipe_center	0.434476	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.163697	no
Pileal_Stipeal_shell	DIF_stipe_skin	0.584875	no
Pileal_Stipeal_shell	DIF_cap_skin	0.404742	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.358404	no
DIF_stipe_center	DIF_gill_tissue	0.714283	no
DIF_stipe_center	YFB_stipe_center	0.586451	no
DIF_stipe_center	YFB_stipe_shell	0.937042	no
DIF_stipe_center	YFB_stipe_skin	0.823354	no
DIF_stipe_center	YFB_cap_skin	0.665514	no
DIF_stipe_center	YFB_cap_tissue	0.345735	no
DIF_stipe_center	YFB_gill_tissue	0.939352	no
DIF_stipe_center	YFB_veil	0.908196	no
DIF_stipe_center	DIF_stipe_shell	0.731444	no
DIF_stipe_center	DIF_stipe_skin	0.902139	no
DIF_stipe_center	DIF_cap_skin	0.985165	no
DIF_stipe_center	DIF_cap_tissue	0.954733	no
DIF_stipe_shell	DIF_gill_tissue	0.352257	no
DIF_stipe_shell	YFB_stipe_center	0.251968	no
DIF_stipe_shell	YFB_stipe_shell	0.817367	no
DIF_stipe_shell	YFB_stipe_skin	0.931642	no
DIF_stipe_shell	YFB_cap_skin	0.961017	no
DIF_stipe_shell	YFB_cap_tissue	0.707211	no
DIF_stipe_shell	YFB_gill_tissue	0.621333	no
DIF_stipe_shell	YFB_veil	0.566769	no
DIF_stipe_shell	DIF_stipe_skin	0.557994	no
DIF_stipe_shell	DIF_cap_skin	0.743606	no
DIF_stipe_shell	DIF_cap_tissue	0.790718	no
DIF_stipe_skin	DIF_gill_tissue	0.853594	no
DIF_stipe_skin	YFB_stipe_center	0.738373	no
DIF_stipe_skin	YFB_stipe_shell	0.816463	no
DIF_stipe_skin	YFB_stipe_skin	0.670322	no
DIF_stipe_skin	YFB_cap_skin	0.501599	no
DIF_stipe_skin	YFB_cap_tissue	0.223034	no
DIF_stipe_skin	YFB_gill_tissue	0.970108	no
DIF_stipe_skin	YFB_veil	0.994029	no
DIF_stipe_skin	DIF_cap_skin	0.880284	no
DIF_stipe_skin	DIF_cap_tissue	0.839352	no
DIF_cap_skin	DIF_gill_tissue	0.685970	no
DIF_cap_skin	YFB_stipe_center	0.558421	no
DIF_cap_skin	YFB_stipe_shell	0.953699	no
DIF_cap_skin	YFB_stipe_skin	0.843249	no
DIF_cap_skin	YFB_cap_skin	0.686330	no
DIF_cap_skin	YFB_cap_tissue	0.376462	no
DIF_cap_skin	YFB_gill_tissue	0.921831	no
DIF_cap_skin	YFB_veil	0.888180	no
DIF_cap_skin	DIF_cap_tissue	0.969447	no
DIF_cap_tissue	DIF_gill_tissue	0.633027	no
DIF_cap_tissue	YFB_stipe_center	0.504798	no
DIF_cap_tissue	YFB_stipe_shell	0.984005	no
DIF_cap_tissue	YFB_stipe_skin	0.885247	no
DIF_cap_tissue	YFB_cap_skin	0.735920	no
DIF_cap_tissue	YFB_cap_tissue	0.419342	no
DIF_cap_tissue	YFB_gill_tissue	0.883971	no
DIF_cap_tissue	YFB_veil	0.847249	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|104670 MRSNAFLLPSVVLIASTPSLCDFPACRSCGSEETLVAWVKRSERNVPPLGYGIPTSNGGSMLTKIPVTYPMGQGE PLNIIISGNSDSRVLVDSPSDGGLQNYFQSLGFSGECLGQRESVHQAANLGDGHDFKNETAVIRWNYGDPELGAC KETIQGGNHFRYWIQDGPQVNSGAIFLAASYEKPIAQQHDIIPNGYNLGRDWLVGNITQSSIPTLNLTNGTTYSG STSSEGYTYKTDISYLSGYLEDTNYGINHNISVGVDGINSVDGLVAVFDVDITQVPPNTSAAWRPSLVSLWHLSC YSFLISFFSFELLS*
Coding	>AgabiH97|104670 ATGCGCTCAAATGCTTTTCTACTGCCATCTGTTGTGCTAATAGCCTCTACACCCTCGTTATGTGATTTTCCAGCT TGCCGGAGTTGTGGCTCAGAGGAGACGCTTGTTGCTTGGGTTAAACGCTCAGAGCGCAACGTGCCACCCTTAGGA TATGGGATTCCGACATCTAATGGAGGGAGTATGCTGACGAAAATTCCAGTGACTTATCCAATGGGGCAAGGGGAG CCTCTAAACATCATCATCAGTGGTAACTCGGACTCCCGTGTGCTAGTCGACTCTCCGAGTGACGGTGGACTTCAG AATTATTTTCAGTCACTAGGCTTTTCTGGTGAATGCCTCGGTCAACGTGAAAGTGTGCACCAAGCTGCTAACCTC GGAGATGGGCATGACTTCAAGAATGAAACTGCCGTTATCAGGTGGAATTACGGTGATCCAGAGTTAGGCGCGTGT AAGGAGACCATTCAGGGGGGGAATCATTTCCGGTATTGGATACAGGACGGTCCTCAAGTCAACAGTGGCGCGATA TTTCTGGCCGCATCATATGAAAAACCAATTGCTCAACAACATGACATCATTCCTAATGGATACAATTTGGGCCGG GATTGGCTAGTGGGCAATATCACCCAGTCGTCAATACCTACCCTCAATCTCACAAACGGCACAACATATTCCGGG TCTACCTCATCCGAAGGGTATACATATAAAACCGACATCTCATACCTTTCCGGTTACCTCGAAGACACGAATTAT GGTATCAACCATAATATCAGTGTTGGAGTTGACGGAATCAACTCAGTGGATGGATTAGTTGCAGTGTTCGATGTT GATATAACTCAAGTTCCACCCAACACATCAGCTGCGTGGCGTCCGTCACTAGTTTCGCTATGGCATCTGTCATGT TACAGTTTTCTGATATCCTTCTTTTCATTTGAACTGTTATCGTAG
Transcript	>AgabiH97|104670 ATGCGCTCAAATGCTTTTCTACTGCCATCTGTTGTGCTAATAGCCTCTACACCCTCGTTATGTGATTTTCCAGCT TGCCGGAGTTGTGGCTCAGAGGAGACGCTTGTTGCTTGGGTTAAACGCTCAGAGCGCAACGTGCCACCCTTAGGA TATGGGATTCCGACATCTAATGGAGGGAGTATGCTGACGAAAATTCCAGTGACTTATCCAATGGGGCAAGGGGAG CCTCTAAACATCATCATCAGTGGTAACTCGGACTCCCGTGTGCTAGTCGACTCTCCGAGTGACGGTGGACTTCAG AATTATTTTCAGTCACTAGGCTTTTCTGGTGAATGCCTCGGTCAACGTGAAAGTGTGCACCAAGCTGCTAACCTC GGAGATGGGCATGACTTCAAGAATGAAACTGCCGTTATCAGGTGGAATTACGGTGATCCAGAGTTAGGCGCGTGT AAGGAGACCATTCAGGGGGGGAATCATTTCCGGTATTGGATACAGGACGGTCCTCAAGTCAACAGTGGCGCGATA TTTCTGGCCGCATCATATGAAAAACCAATTGCTCAACAACATGACATCATTCCTAATGGATACAATTTGGGCCGG GATTGGCTAGTGGGCAATATCACCCAGTCGTCAATACCTACCCTCAATCTCACAAACGGCACAACATATTCCGGG TCTACCTCATCCGAAGGGTATACATATAAAACCGACATCTCATACCTTTCCGGTTACCTCGAAGACACGAATTAT GGTATCAACCATAATATCAGTGTTGGAGTTGACGGAATCAACTCAGTGGATGGATTAGTTGCAGTGTTCGATGTT GATATAACTCAAGTTCCACCCAACACATCAGCTGCGTGGCGTCCGTCACTAGTTTCGCTATGGCATCTGTCATGT TACAGTTTTCTGATATCCTTCTTTTCATTTGAACTGTTATCGTAG
Gene	>AgabiH97|104670 ATGCGCTCAAATGCTTTTCTACTGCCATCTGTTGTGCTAATAGCCTCTACACCCTCGTTATGTGATTTTCCAGCT TGCCGGAGTTGTGGCTCAGAGGAGACGCTTGTTGCTTGGGTTAAACGCTCAGAGCGCAACGTGCCACCCTTAGGA TATGGGATTCCGACATCTAATGGAGGGAGTATGCTGACGGTACGTTGCTTGAACCCTGACAAGCGGGAACAGTAC ATTTATGCTACAAGATGCTTAGAAAATTCCAGTGACTTATCCAATGGGGCAAGGGGAGCCTCTAAACATCATCAT CAGTGGTAACTCGGACTCCCGTGTGCTAGTCGACTCTCCGAGTGACGGTGGACTTCAGAATTATTTTCAGTGCGC GCTTCTATCTATCATGTGTATCAATGGATGTCACAACTTATTCATCTCTTTCATCTTCAGGTCACTAGGCTTTTC TGGTGAATGCCTCGGTCAACGTGAAAGTGTGCACCAAGCTGCTAACCTCGGAGATGGGCATGACTTCAGTACGTG TGTTCTCAATACCGTTGAGATTCTTTTTGGGTCTAACGCGATTGACAAGAGAATGAAACTGCCGTTATCAGGTGG AATTACGGTGATCCAGAGTTAGGCGCGTGTAAGGAGACCATTCAGGGGGGGAATCATTTCCGGTATTGGATACAG GACGGTCCTCAAGTCAACAGGTATGTCTACCCCATATGAACTATTAAGCAAGAGAAGCTCACGTCAAAGCGGACG GTAATAGTGGCGCGATATTTCTGGCCGCATCATATGAAAAACCAATTGCTCGTAAGTGCATACTCATTTCACTCA CTACCTGATACCGGATGTGCTTATCCTGACTCTGTGATTGACAATAGAACAACATGACATCATTCCTAATGGATA CAATTTGGGCCGGTAAGTTATAACTTCTATCAACCTTTTTTCTGATGATTCTGATGATGCGACAATCACAGGGAT TGGCTAGTGGGCAATATCACCCAGTCGTCAATACCTACCCTCAATCTCACAAACGGCACAACATATTCCGGGTCT ACCTCATCCGAAGGGTATACATATAAAACCGACATCTCATACCTTTCCGGTTACCTCGAAGACACGAATTATGGT ATCAACCATAATATCAGTGTTGGAGTTGACGGAATCAACTCAGTGGATGGATTAGTTGCAGTGTTCGATGTTGAT ATAACTCAAGTTCCACCCAACACATCGTATGTTCATTTTCGTTCTTTCTTCTCTTTTTCACTGTGAGACTAACTC TGGCTCATTTGTTTGTCTTCAGAGCTGCGTGGCGTCCGTCACTAGTTTCGCTATGGCATCTGTCATGTTACAGTT TTCTGATATCCTTCTTTTCATTTGAACTGTTATCGTAG