Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|104030
Gene name
Locationscaffold_7:1738143..1740246
Strand+
Gene length (bp)2103
Transcript length (bp)1671
Coding sequence length (bp)1671
Protein length (aa) 557

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07250 Glyoxal_oxid_N Glyoxal oxidase N-terminus 7.4E-29 68 278
PF09118 GO-like_E_set Galactose oxidase-like, Early set domain 2.6E-19 442 541

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|D4AUF1|WSCD1_ARTBC WSC domain-containing protein ARB_07867 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07867 PE=1 SV=1 82 542 1.0E-48

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 14.20 7.63 20.77
Initials Initials knots 17.00 9.37 24.63
Pileal_Stipeal_center Stage I stipe center 12.83 6.82 18.85
Pileal_Stipeal_shell Stage I stipe shell 14.75 7.98 21.53
DIF_stipe_center Stage II stipe center 10.99 5.73 16.25
DIF_stipe_shell Stage II stipe shell 11.66 6.12 17.21
DIF_stipe_skin Stage II stipe skin 12.09 6.33 17.85
DIF_cap_skin Stage II cap skin 12.78 6.79 18.76
DIF_cap_tissue Stage II cap tissue 12.49 6.62 18.36
DIF_gill_tissue Stage II gill tissue 13.10 6.95 19.25
YFB_stipe_center Young fruiting body stipe center 10.55 5.45 15.65
YFB_stipe_shell Young fruiting body stipe shell 10.00 5.14 14.87
YFB_stipe_skin Young fruiting body stipe skin 12.42 6.59 18.24
YFB_cap_skin Young fruiting body cap skin 12.72 6.76 18.68
YFB_cap_tissue Young fruiting body cap tissue 15.23 8.32 22.14
YFB_gill_tissue Young fruiting body gill tissue 12.54 6.63 18.46
YFB_veil Young fruiting body veil 12.25 6.50 18.00

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.888534 no
Casing YFB_stipe_center 0.463742 no
Casing YFB_stipe_shell 0.359520 no
Casing YFB_stipe_skin 0.795220 no
Casing YFB_cap_skin 0.840240 no
Casing YFB_cap_tissue 0.906475 no
Casing YFB_gill_tissue 0.815158 no
Casing YFB_veil 0.770622 no
Casing Initials 0.691281 no
Casing Pileal_Stipeal_center 0.855567 no
Casing Pileal_Stipeal_shell 0.951715 no
Casing DIF_stipe_center 0.537639 no
Casing DIF_stipe_shell 0.664198 no
Casing DIF_stipe_skin 0.740714 no
Casing DIF_cap_skin 0.849148 no
Casing DIF_cap_tissue 0.807183 no
DIF_gill_tissue YFB_stipe_center 0.642396 no
DIF_gill_tissue YFB_stipe_shell 0.538457 no
DIF_gill_tissue YFB_stipe_skin 0.932620 no
DIF_gill_tissue YFB_cap_skin 0.963467 no
DIF_gill_tissue YFB_cap_tissue 0.766328 no
DIF_gill_tissue YFB_gill_tissue 0.946455 no
DIF_gill_tissue YFB_veil 0.913413 no
YFB_stipe_center YFB_stipe_shell 0.936865 no
YFB_stipe_center YFB_stipe_skin 0.751088 no
YFB_stipe_center YFB_cap_skin 0.701425 no
YFB_stipe_center YFB_cap_tissue 0.328878 no
YFB_stipe_center YFB_gill_tissue 0.727895 no
YFB_stipe_center YFB_veil 0.776430 no
YFB_stipe_shell YFB_stipe_skin 0.647397 no
YFB_stipe_shell YFB_cap_skin 0.591974 no
YFB_stipe_shell YFB_cap_tissue 0.231107 no
YFB_stipe_shell YFB_gill_tissue 0.623113 no
YFB_stipe_shell YFB_veil 0.674228 no
YFB_stipe_skin YFB_cap_skin 0.970020 no
YFB_stipe_skin YFB_cap_tissue 0.655960 no
YFB_stipe_skin YFB_gill_tissue 0.987947 no
YFB_stipe_skin YFB_veil 0.983895 no
YFB_cap_skin YFB_cap_tissue 0.704018 no
YFB_cap_skin YFB_gill_tissue 0.982888 no
YFB_cap_skin YFB_veil 0.952812 no
YFB_cap_tissue YFB_gill_tissue 0.670818 no
YFB_cap_tissue YFB_veil 0.622277 no
YFB_gill_tissue YFB_veil 0.970355 no
Initials DIF_gill_tissue 0.519036 no
Initials YFB_stipe_center 0.154255 no
Initials YFB_stipe_shell 0.104906 no
Initials YFB_stipe_skin 0.408755 no
Initials YFB_cap_skin 0.449293 no
Initials YFB_cap_tissue 0.832100 no
Initials YFB_gill_tissue 0.426345 no
Initials YFB_veil 0.382526 no
Initials Pileal_Stipeal_center 0.476848 no
Initials Pileal_Stipeal_shell 0.770660 no
Initials DIF_stipe_center 0.198297 no
Initials DIF_stipe_shell 0.284650 no
Initials DIF_stipe_skin 0.355606 no
Initials DIF_cap_skin 0.472518 no
Initials DIF_cap_tissue 0.420849 no
Pileal_Stipeal_center DIF_gill_tissue 0.975594 no
Pileal_Stipeal_center YFB_stipe_center 0.683627 no
Pileal_Stipeal_center YFB_stipe_shell 0.570491 no
Pileal_Stipeal_center YFB_stipe_skin 0.959277 no
Pileal_Stipeal_center YFB_cap_skin 0.988776 no
Pileal_Stipeal_center YFB_cap_tissue 0.723016 no
Pileal_Stipeal_center YFB_gill_tissue 0.972335 no
Pileal_Stipeal_center YFB_veil 0.942194 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.784425 no
Pileal_Stipeal_center DIF_stipe_center 0.758062 no
Pileal_Stipeal_center DIF_stipe_shell 0.866076 no
Pileal_Stipeal_center DIF_stipe_skin 0.920133 no
Pileal_Stipeal_center DIF_cap_skin 0.994004 no
Pileal_Stipeal_center DIF_cap_tissue 0.968023 no
Pileal_Stipeal_shell DIF_gill_tissue 0.823354 no
Pileal_Stipeal_shell YFB_stipe_center 0.383711 no
Pileal_Stipeal_shell YFB_stipe_shell 0.286119 no
Pileal_Stipeal_shell YFB_stipe_skin 0.723103 no
Pileal_Stipeal_shell YFB_cap_skin 0.772091 no
Pileal_Stipeal_shell YFB_cap_tissue 0.960410 no
Pileal_Stipeal_shell YFB_gill_tissue 0.740714 no
Pileal_Stipeal_shell YFB_veil 0.694846 no
Pileal_Stipeal_shell DIF_stipe_center 0.457058 no
Pileal_Stipeal_shell DIF_stipe_shell 0.582750 no
Pileal_Stipeal_shell DIF_stipe_skin 0.662490 no
Pileal_Stipeal_shell DIF_cap_skin 0.778735 no
Pileal_Stipeal_shell DIF_cap_tissue 0.732490 no
DIF_stipe_center DIF_gill_tissue 0.716816 no
DIF_stipe_center YFB_stipe_center 0.949707 no
DIF_stipe_center YFB_stipe_shell 0.869723 no
DIF_stipe_center YFB_stipe_skin 0.818701 no
DIF_stipe_center YFB_cap_skin 0.775862 no
DIF_stipe_center YFB_cap_tissue 0.391271 no
DIF_stipe_center YFB_gill_tissue 0.800525 no
DIF_stipe_center YFB_veil 0.844986 no
DIF_stipe_center DIF_stipe_shell 0.920963 no
DIF_stipe_center DIF_stipe_skin 0.862075 no
DIF_stipe_center DIF_cap_skin 0.765177 no
DIF_stipe_center DIF_cap_tissue 0.809022 no
DIF_stipe_shell DIF_gill_tissue 0.830475 no
DIF_stipe_shell YFB_stipe_center 0.862075 no
DIF_stipe_shell YFB_stipe_shell 0.764295 no
DIF_stipe_shell YFB_stipe_skin 0.916871 no
DIF_stipe_shell YFB_cap_skin 0.880651 no
DIF_stipe_shell YFB_cap_tissue 0.517429 no
DIF_stipe_shell YFB_gill_tissue 0.902540 no
DIF_stipe_shell YFB_veil 0.937256 no
DIF_stipe_shell DIF_stipe_skin 0.954432 no
DIF_stipe_shell DIF_cap_skin 0.874658 no
DIF_stipe_shell DIF_cap_tissue 0.909899 no
DIF_stipe_skin DIF_gill_tissue 0.890970 no
DIF_stipe_skin YFB_stipe_center 0.802047 no
DIF_stipe_skin YFB_stipe_shell 0.699220 no
DIF_stipe_skin YFB_stipe_skin 0.967720 no
DIF_stipe_skin YFB_cap_skin 0.935756 no
DIF_stipe_skin YFB_cap_tissue 0.600995 no
DIF_stipe_skin YFB_gill_tissue 0.955580 no
DIF_stipe_skin YFB_veil 0.983990 no
DIF_stipe_skin DIF_cap_skin 0.930202 no
DIF_stipe_skin DIF_cap_tissue 0.962561 no
DIF_cap_skin DIF_gill_tissue 0.970161 no
DIF_cap_skin YFB_stipe_center 0.693912 no
DIF_cap_skin YFB_stipe_shell 0.584487 no
DIF_cap_skin YFB_stipe_skin 0.965501 no
DIF_cap_skin YFB_cap_skin 0.993452 no
DIF_cap_skin YFB_cap_tissue 0.712726 no
DIF_cap_skin YFB_gill_tissue 0.977679 no
DIF_cap_skin YFB_veil 0.948247 no
DIF_cap_skin DIF_cap_tissue 0.973808 no
DIF_cap_tissue DIF_gill_tissue 0.940333 no
DIF_cap_tissue YFB_stipe_center 0.739626 no
DIF_cap_tissue YFB_stipe_shell 0.629667 no
DIF_cap_tissue YFB_stipe_skin 0.991873 no
DIF_cap_tissue YFB_cap_skin 0.977538 no
DIF_cap_tissue YFB_cap_tissue 0.665887 no
DIF_cap_tissue YFB_gill_tissue 0.994067 no
DIF_cap_tissue YFB_veil 0.976772 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|104030
MIGNVLLAFLAVPLTARAAPTEGKGWHFVQNGTTGIVALESIIVSDTLALLFDRATNNPLQIDGHPAWGALWNLE
TNTASPLNVTTDAFCATGSFLSNGTMVSIGGHRPAIPEAEDGRNGLRIWEPCDDPNGEGCILFEDPETLHMAETR
WYATSLRIFDGSIMIIGGVHQRTPFNNDDPVNNLEFFPPKDGGIPRPLDLLERTLPANLFPRSFALPDGKIFMAA
ANQTIIYDFEANTETRLPDIPNNVRITNPLDGTATLLPLHPPDYIPEILICGGTNTSDQLPVEELSSQTPASDQC
SRMTLTPEGIERGWEIERMLEPRMMPEMILMPNGEIVIINGAQSGYAAFAGVKDPVGNSNADHPAFTPSIYTPDA
PLGQRISNAGMPTTDIARVYHSTVTLTQKGNLLIAGSSPNPVVVNDTQYPSEFRVEYLNPPYMTVERPQLSNVPK
QIAFNSQFSVDVSIPSRLTQGDLKVALMDLGFSSHAFHSSSRLVFMDAQLSEDGKTLSIKSPPNNRVYPPGPAYI
FLTVGDVSSPGARVMVGNGATPPVEDQGVPI*
Coding >AgabiH97|104030
ATGATTGGAAATGTTCTTCTAGCATTTCTGGCGGTTCCCCTCACTGCTCGAGCTGCCCCTACGGAAGGCAAGGGA
TGGCACTTTGTACAAAACGGAACTACTGGAATTGTTGCGCTGGAGTCAATCATTGTCTCCGATACTTTGGCTTTA
CTCTTTGATCGGGCGACAAACAATCCACTGCAAATCGATGGACATCCTGCTTGGGGTGCATTGTGGAATCTGGAA
ACAAATACTGCAAGCCCCTTGAACGTTACTACCGACGCATTCTGCGCCACCGGAAGTTTCTTGTCCAACGGAACA
ATGGTCAGTATTGGCGGACATAGACCTGCGATTCCTGAAGCCGAAGATGGACGTAACGGGCTCAGGATCTGGGAG
CCTTGTGATGATCCTAACGGCGAAGGCTGCATCTTGTTTGAAGACCCGGAAACTCTCCATATGGCCGAGACCAGG
TGGTATGCAACGAGTTTGCGGATTTTCGACGGATCTATTATGATCATCGGTGGTGTTCACCAAAGAACTCCTTTT
AATAATGATGATCCTGTAAACAACCTCGAGTTTTTCCCACCCAAAGACGGCGGAATCCCAAGGCCATTGGATCTT
CTGGAGCGGACTCTTCCTGCAAATCTTTTCCCTCGGTCTTTTGCGTTACCGGATGGCAAAATCTTCATGGCGGCC
GCAAACCAAACCATAATCTACGACTTCGAAGCCAACACAGAGACAAGGCTCCCAGACATACCTAACAACGTCCGT
ATCACGAATCCTCTCGACGGGACGGCTACCCTTCTTCCTCTTCACCCACCCGACTACATTCCAGAAATTCTTATT
TGCGGTGGGACAAACACAAGTGACCAACTGCCTGTGGAAGAACTATCGTCGCAGACACCTGCGTCAGATCAATGC
AGCCGTATGACGCTGACACCTGAAGGTATTGAACGCGGGTGGGAAATCGAAAGAATGCTGGAGCCCAGGATGATG
CCAGAGATGATCTTGATGCCGAACGGAGAAATTGTTATCATTAATGGTGCGCAGTCAGGTTATGCTGCGTTTGCT
GGCGTGAAAGATCCGGTCGGCAACTCGAATGCGGATCACCCAGCGTTCACACCATCTATCTATACGCCTGATGCT
CCTCTCGGGCAACGTATCAGTAACGCGGGAATGCCAACGACTGACATAGCACGTGTATATCATTCGACCGTGACT
CTCACACAGAAAGGTAATCTTCTGATCGCCGGCTCCAGTCCTAACCCTGTCGTCGTTAATGACACTCAATATCCG
AGTGAATTCCGGGTGGAGTACTTGAATCCCCCATACATGACTGTAGAGAGACCCCAGCTATCCAATGTCCCGAAG
CAGATAGCTTTCAACTCCCAATTCAGCGTGGATGTGTCAATTCCTTCACGTCTCACCCAAGGGGATCTAAAAGTT
GCGTTGATGGATCTTGGATTCTCATCGCACGCTTTCCATTCGAGTTCCCGCCTTGTATTTATGGATGCTCAGCTG
TCTGAGGATGGGAAAACATTGAGTATCAAGAGTCCGCCTAATAACCGTGTTTACCCTCCCGGTCCGGCCTATATC
TTCTTGACGGTTGGCGACGTCAGTAGTCCAGGAGCCAGAGTCATGGTTGGGAATGGTGCTACCCCACCGGTTGAG
GACCAAGGCGTTCCAATTTAG
Transcript >AgabiH97|104030
ATGATTGGAAATGTTCTTCTAGCATTTCTGGCGGTTCCCCTCACTGCTCGAGCTGCCCCTACGGAAGGCAAGGGA
TGGCACTTTGTACAAAACGGAACTACTGGAATTGTTGCGCTGGAGTCAATCATTGTCTCCGATACTTTGGCTTTA
CTCTTTGATCGGGCGACAAACAATCCACTGCAAATCGATGGACATCCTGCTTGGGGTGCATTGTGGAATCTGGAA
ACAAATACTGCAAGCCCCTTGAACGTTACTACCGACGCATTCTGCGCCACCGGAAGTTTCTTGTCCAACGGAACA
ATGGTCAGTATTGGCGGACATAGACCTGCGATTCCTGAAGCCGAAGATGGACGTAACGGGCTCAGGATCTGGGAG
CCTTGTGATGATCCTAACGGCGAAGGCTGCATCTTGTTTGAAGACCCGGAAACTCTCCATATGGCCGAGACCAGG
TGGTATGCAACGAGTTTGCGGATTTTCGACGGATCTATTATGATCATCGGTGGTGTTCACCAAAGAACTCCTTTT
AATAATGATGATCCTGTAAACAACCTCGAGTTTTTCCCACCCAAAGACGGCGGAATCCCAAGGCCATTGGATCTT
CTGGAGCGGACTCTTCCTGCAAATCTTTTCCCTCGGTCTTTTGCGTTACCGGATGGCAAAATCTTCATGGCGGCC
GCAAACCAAACCATAATCTACGACTTCGAAGCCAACACAGAGACAAGGCTCCCAGACATACCTAACAACGTCCGT
ATCACGAATCCTCTCGACGGGACGGCTACCCTTCTTCCTCTTCACCCACCCGACTACATTCCAGAAATTCTTATT
TGCGGTGGGACAAACACAAGTGACCAACTGCCTGTGGAAGAACTATCGTCGCAGACACCTGCGTCAGATCAATGC
AGCCGTATGACGCTGACACCTGAAGGTATTGAACGCGGGTGGGAAATCGAAAGAATGCTGGAGCCCAGGATGATG
CCAGAGATGATCTTGATGCCGAACGGAGAAATTGTTATCATTAATGGTGCGCAGTCAGGTTATGCTGCGTTTGCT
GGCGTGAAAGATCCGGTCGGCAACTCGAATGCGGATCACCCAGCGTTCACACCATCTATCTATACGCCTGATGCT
CCTCTCGGGCAACGTATCAGTAACGCGGGAATGCCAACGACTGACATAGCACGTGTATATCATTCGACCGTGACT
CTCACACAGAAAGGTAATCTTCTGATCGCCGGCTCCAGTCCTAACCCTGTCGTCGTTAATGACACTCAATATCCG
AGTGAATTCCGGGTGGAGTACTTGAATCCCCCATACATGACTGTAGAGAGACCCCAGCTATCCAATGTCCCGAAG
CAGATAGCTTTCAACTCCCAATTCAGCGTGGATGTGTCAATTCCTTCACGTCTCACCCAAGGGGATCTAAAAGTT
GCGTTGATGGATCTTGGATTCTCATCGCACGCTTTCCATTCGAGTTCCCGCCTTGTATTTATGGATGCTCAGCTG
TCTGAGGATGGGAAAACATTGAGTATCAAGAGTCCGCCTAATAACCGTGTTTACCCTCCCGGTCCGGCCTATATC
TTCTTGACGGTTGGCGACGTCAGTAGTCCAGGAGCCAGAGTCATGGTTGGGAATGGTGCTACCCCACCGGTTGAG
GACCAAGGCGTTCCAATTTAG
Gene >AgabiH97|104030
ATGATTGGAAATGTTCTTCTAGCATTTCTGGCGGTTCCCCTCACTGCTCGAGCTGCCCCTACGGAAGGCAAGGGA
TGGCACTTTGTACAAAACGGAACTACTGGAATTGTTGCGCTGGAGTCAATCATTGTCTCCGATACTTTGGCTTTA
CTCTTTGATCGGGCGACAAACAATCCACTGCAAATCGATGGACATCCTGCTTGGGGTGCATTGTGGAATCTGGAA
ACAAATACTGCAAGCCCCTTGAACGTTACTACCGACGCATTCTGCGCCACCGGAAGTTTCTTGTCCAACGGAACA
ATGGTATGTACTTATGGTTATGATAATATTCAGCTGTGACAAGTCCACTTCAACAGGTCAGTATTGGCGGACATA
GACCTGCGATTCCTGAAGCCGAAGATGGACGTAACGGGCTCAGGATCTGGGAGCCTTGTGATGATCCTAACGGCG
AAGGCTGCATCTTGTTTGAAGACCCGGAAACTCTCCATATGGCCGAGACCAGGTGGTATGCAACGAGTTTGCGGA
TTTTCGACGGATCTATTGTGAGTATTTACTCAGCAACAGCACACTTGAACTTCATCAGATACCCCGTCTAGATGA
TCATCGGTGGTGTTCACCAAAGAACTCCTTTTAATAATGATGATCCTGTAAACAACCTCGAGTTTTTCCCACCCA
AAGACGGCGGAATCCCAAGGCCATTGGATCTTCTGGAGCGGACTCTTCCTGCAAATCTTTTCCCTCGGTATGTAT
ATATTTAACTTAAGGTTCACGATACTAAGCCACCGTCATCGTCATCAGGTCTTTTGCGTTACCGGATGGCAAAAT
CTTCATGGCGGCCGCAAACCAAACCATAATCTACGACTTCGAAGCCAACACAGAGACAAGGCTCCCAGACATACC
TAACAACGTCCGTATCACGAATCCTCTCGACGGGACGGCTACCCTTCTTCCTCTTCACCCACCCGACTACATTCC
AGAAATTCTTATTTGCGGTGGGACAAACACAAGTGACCAACTGCCTGTGGAAGAACTATCGTCGCAGACACCTGC
GTCAGATCAATGCAGCCGTATGACGCTGACACCTGAAGGTATTGAACGCGGGTGGGAAATCGAAAGAATGCTGGA
GCCCAGGATGATGCCAGAGATGATCTTGATGCCGAACGGAGAAATTGTTATCATTAATGGTGCGCAGTCAGGTTA
TGCTGCGTTTGCTGGCGTGAAAGATCCGGTCGGCAACTCGAATGCGGATCACCCAGCGTAAGTTGATAAATCCAT
GACTTTTGAGTGTTGGTTCCACAGTGTACTAAACTCCTGAAACTCGTAGGTTCACACCATCTATCTATACGCCTG
ATGCTCCTCTCGGGCAACGTATCAGTAACGCGGGAATGCCAACGACTGACATAGCACGTGTATATCATTCGACCG
TGACTCTCACACAGAAAGGGTGAGCCATATAATAACATGAAATTGTATAGCTAACGTTCCTCTTCAGTAATCTTC
TGATCGCCGGCTCCAGTCCTAACCCTGTCGTCGTTAATGACACTCAATATCCGAGGTAAATAATCCATCGTTGCA
TATAACTTAATTCACATCCTTTACTTCATGATCCCAGTGAATTCCGGGTGGAGTACTTGAATCCCCCATACATGA
CTGTAGAGAGACCCCAGCTATCCAATGTCCCGAAGCAGATAGCTTTCAACTCCCAATTCAGCGTGGATGTGTCAA
TTCCTTCACGTCTCACCCAAGGGGATCTAAAAGGTAAGTAGAATTTATTTATAGACAGATAGACACTCATACTCA
GACAGTTGCGTTGATGGATCTTGGATTCTCATCGCACGCTTTCCATTCGAGTTCCCGCCTTGTATTTATGGATGC
TCAGCTGTCTGAGGATGGGAAAACATTGAGTATCAAGAGTCCGCCTAATAACCGTGTTTACCCTCCCGGTCCGGG
TATGTAATGAGCCTGTGATGCATTTTTGTGGTTGCTGACAAAATTATAGCCTATATCTTCTTGACGGTTGGCGAC
GTCAGTAGTCCAGGAGCCAGAGTCATGGTTGGGAATGGTGCTACCCCACCGGTTGAGGACCAAGGCGTTCCAATT
TAG

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