Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|103480
Gene name
Locationscaffold_7:1608802..1609579
Strand+
Gene length (bp)777
Transcript length (bp)552
Coding sequence length (bp)552
Protein length (aa) 184

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 9.1E-11 1 58

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.1799 0.0959 0.0816 0.837 0.1518 0.0095 0.0837 0.2564 0.3396 0.075

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|103480
MIDRIIRLTVQTGLVTSVLATTDLIVYLADASGNHLIFNYPLGKVYSNSLMSSLNSRKGWGYSSEANDCDDVVSD
SGVKTTDLPRISAEAESERGKSSTSIASRLRAQSISLSHGAMEITNGLFSRRPKKRTAPEVHVRIDSLESRDFSP
QLHWSTHADPEDTSKTGCDPLKDEKKTIVPARD*
Coding >AgabiH97|103480
ATGATTGACCGCATCATCAGACTCACTGTCCAGACTGGGCTCGTCACCTCGGTCTTAGCCACTACCGACTTGATT
GTTTATCTCGCAGACGCTTCGGGAAATCATCTAATCTTCAATTATCCGCTCGGCAAAGTATATAGCAATTCCCTT
ATGAGTAGCCTTAACTCCCGCAAAGGCTGGGGATATTCATCCGAAGCAAATGATTGTGATGATGTGGTTAGCGAC
TCTGGGGTCAAAACTACGGACTTACCCCGAATTTCGGCGGAGGCTGAAAGTGAACGAGGGAAATCGTCCACCAGC
ATTGCCAGTCGTCTCCGCGCTCAGAGTATAAGTCTTTCTCATGGAGCCATGGAGATCACCAACGGTCTTTTCAGC
AGACGACCCAAGAAAAGGACCGCACCCGAAGTCCATGTTCGCATTGACTCTCTCGAATCACGAGACTTTTCACCT
CAATTGCACTGGTCAACCCACGCTGACCCCGAGGACACCTCTAAAACGGGGTGCGACCCGCTCAAAGACGAAAAA
AAGACTATTGTTCCGGCACGCGATTGA
Transcript >AgabiH97|103480
ATGATTGACCGCATCATCAGACTCACTGTCCAGACTGGGCTCGTCACCTCGGTCTTAGCCACTACCGACTTGATT
GTTTATCTCGCAGACGCTTCGGGAAATCATCTAATCTTCAATTATCCGCTCGGCAAAGTATATAGCAATTCCCTT
ATGAGTAGCCTTAACTCCCGCAAAGGCTGGGGATATTCATCCGAAGCAAATGATTGTGATGATGTGGTTAGCGAC
TCTGGGGTCAAAACTACGGACTTACCCCGAATTTCGGCGGAGGCTGAAAGTGAACGAGGGAAATCGTCCACCAGC
ATTGCCAGTCGTCTCCGCGCTCAGAGTATAAGTCTTTCTCATGGAGCCATGGAGATCACCAACGGTCTTTTCAGC
AGACGACCCAAGAAAAGGACCGCACCCGAAGTCCATGTTCGCATTGACTCTCTCGAATCACGAGACTTTTCACCT
CAATTGCACTGGTCAACCCACGCTGACCCCGAGGACACCTCTAAAACGGGGTGCGACCCGCTCAAAGACGAAAAA
AAGACTATTGTTCCGGCACGCGATTGA
Gene >AgabiH97|103480
ATGATTGACCGCATCATCAGACGTTAGTCGACTCTTTTTTTCTTTTCAAGCTTTCGTTTCTTTTTGCCTGAACTC
GTTTCTTTAGTCACTGTCCAGACTGGGCTCGTCACCTCGGTCTTAGCCACTACCGACTTGATTGTTTATCTCGCA
GACGTAAGCAAATACCAAATTTTCCGATTAAGGCGATCTAATCTTGTATATAGGCTTCGGGAAAGTGGGTATGGT
TGAGCTTCATGAAATGACTTGCTGAAATAATTGTCTAGTCATCTAATCTTCAATTATCCGCTCGGCAAAGTATAT
AGCAATTCCCTTATGAGTAGCCTTAACTCCCGCAAAGGCTGGGGATATTCATCCGAAGCAAATGATTGTGATGAT
GTGGTTAGCGACTCTGGGGTCAAAACTACGGACTTACCCCGAATTTCGGCGGAGGCTGAAAGTGAACGAGGGAAA
TCGTCCACCAGCATTGCCAGTCGTCTCCGCGCTCAGAGTATAAGTCTTTCTCATGGAGCCATGGAGATCACCGTG
AGTGACTTGCTCAGCCACAGTACGCGAGGAAAAGAATCTTACATTCTGTGATTATCGTAGAACGGTCTTTTCAGC
AGACGACCCAAGAAAAGGACCGCACCCGAAGTCCATGTTCGCATTGACTCTCTCGAATCACGAGACTTTTCACCT
CAATTGCACTGGTCAACCCACGCTGACCCCGAGGACACCTCTAAAACGGGGTGCGACCCGCTCAAAGACGAAAAA
AAGACTATTGTTCCGGCACGCGATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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