Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|103470
Gene name
Locationscaffold_7:1607646..1608766
Strand+
Gene length (bp)1120
Transcript length (bp)540
Coding sequence length (bp)540
Protein length (aa) 180

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide|Transmembrane domain 0.125 0.1045 0.695 0.4422 0.266 0.0103 0.1588 0.5146 0.4202 0.0248

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 12 34 22
2 46 68 22
3 83 105 22
4 118 140 22
5 155 177 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|103470
MANPAQIAHGPMFIGFMFNIFLFGVMTTQVYIYYTNFPRDRWWMKFFVLLIFILDAINSVFNAIYLYDTLILRFG
DMEVIRTANWLFATEPAFVGVIAALVQLFFSWRVKVLTKNYILSAIVASGAVIGGVCGVVTAWEVMQTPHFIEFR
NFKVVVIIWLYGIWYAKPPTLLAGFPILP*
Coding >AgabiH97|103470
ATGGCAAATCCGGCACAAATCGCACATGGACCTATGTTCATCGGATTTATGTTCAATATCTTCCTCTTCGGCGTG
ATGACGACTCAGGTTTACATCTATTATACAAATTTTCCCAGGGACCGCTGGTGGATGAAGTTTTTCGTACTCCTT
ATCTTCATCCTTGACGCAATCAATTCCGTATTTAACGCCATATATCTATACGACACTCTCATCCTTCGGTTCGGT
GATATGGAAGTTATCAGGACGGCCAACTGGTTATTTGCTACAGAACCTGCCTTCGTCGGGGTAATAGCTGCTCTA
GTTCAGCTATTTTTTTCATGGCGTGTTAAAGTCTTGACCAAAAATTACATCTTGAGCGCAATTGTAGCTTCGGGT
GCTGTGATTGGTGGAGTCTGCGGTGTCGTCACTGCATGGGAGGTTATGCAAACTCCCCACTTCATAGAATTCCGA
AACTTCAAAGTAGTTGTTATCATTTGGCTGTATGGTATCTGGTACGCGAAACCTCCTACGCTCCTCGCAGGCTTC
CCCATTCTCCCTTAG
Transcript >AgabiH97|103470
ATGGCAAATCCGGCACAAATCGCACATGGACCTATGTTCATCGGATTTATGTTCAATATCTTCCTCTTCGGCGTG
ATGACGACTCAGGTTTACATCTATTATACAAATTTTCCCAGGGACCGCTGGTGGATGAAGTTTTTCGTACTCCTT
ATCTTCATCCTTGACGCAATCAATTCCGTATTTAACGCCATATATCTATACGACACTCTCATCCTTCGGTTCGGT
GATATGGAAGTTATCAGGACGGCCAACTGGTTATTTGCTACAGAACCTGCCTTCGTCGGGGTAATAGCTGCTCTA
GTTCAGCTATTTTTTTCATGGCGTGTTAAAGTCTTGACCAAAAATTACATCTTGAGCGCAATTGTAGCTTCGGGT
GCTGTGATTGGTGGAGTCTGCGGTGTCGTCACTGCATGGGAGGTTATGCAAACTCCCCACTTCATAGAATTCCGA
AACTTCAAAGTAGTTGTTATCATTTGGCTGTATGGTATCTGGTACGCGAAACCTCCTACGCTCCTCGCAGGCTTC
CCCATTCTCCCTTAG
Gene >AgabiH97|103470
ATGGCAAATCCGGCACAAATCGCGTAGGTCGCCGTCCCCCTCGACATCAAGCGGATAGTTTTCTGACTGCTAGAA
ATAGACATGGACCTATGTTCATCGGATTTATGTTCAATATCTTCCTCTTCGGCGTGATGACGACTCAGGTTTACA
TCTATTATACAAATTTTCCCAGGTACGTCGTCACCGTGTCAATCATCACTTTCCAGACTCACGCGTATTATAGGG
ACCGCTGGTGGATGAAGTTTTTCGTAAGGTCTTGCAAAGGTTACAATATGAAACAAACTGACTTCGTATGGACAG
GTACTCCTTATCTTCATCCTTGACGCAATCAATTCCGTATTTAACGCCATATATCTATACGACACTCTCATCCTT
CGGTTCGGTAAATGCGGTGTAATACATATTTTGTTCCATTTCAAGCTGACAGGATACCTAGGTGATATGGAAGTT
ATCAGGACGGCCAACTGGTGTTAGTTATCTCATTCTTTTCTTTCTGCTGCTCTCTCAATCTAGTTGAAGTATTTG
CTACAGGTTTCGCGCGTCCTGTTCACACCTGGTATATGTGACTGATTTGTCTCCTCTGTATCAGAACCTGCCTTC
GTCGTGAGTCCTGTGTCCACCTTTATGCGATTATCAATTTCAAGTATCTCTCATGATAGGGGGTAATAGCTGCTC
TAGTTCAGCTATTTTTTTCATGGCGTGTTAAAGTCTTGACCAAAAATTACATCTTGAGCGCAATTGTAGCTTCGG
GTGCTGTGATTGGTGGAGGTAAGCAAGAGTTTGCTATCCTCTTTTGTCTTTCTGATTTTCATTTTCAGTCTGCGG
TGTCGTCACTGCATGGGAGGTTATGCAAACTCCCCACTTCATAGAATTCCGAAACTTCAAAGTTAGTTGTAGACA
TAACTTATGCATTTCCTTTTATTGACTAACGTCCTGATAGGTAGTTGTTATCATTTGGCTGGTCACAGCAAGCTT
GGTCGATGTGCTTATCACCTCGGCTTTAGTATGGTATCTGTGCGTTTTCTTTTCAACGTGTATATGACAGTTCCA
TCCTCATCTTATATAACAAGGGTACGCGAAACCTCCTACGCTCCTCGCAGGCTTCCCCATTCTCCCTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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