Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|101830
Gene name
Locationscaffold_7:1184548..1186089
Strand+
Gene length (bp)1541
Transcript length (bp)1161
Coding sequence length (bp)1161
Protein length (aa) 387

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02492 cobW CobW/HypB/UreG, nucleotide-binding domain 3.9E-46 19 217
PF07683 CobW_C Cobalamin synthesis protein cobW C-terminal domain 3.1E-07 317 381

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 17 376 2.0E-73
sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 17 378 3.0E-73
sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=1 SV=1 16 378 3.0E-73
sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 17 376 3.0E-72
sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 17 376 7.0E-71
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Swissprot ID Swissprot Description Start End E-value
sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1 17 376 2.0E-73
sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2 17 378 3.0E-73
sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=1 SV=1 16 378 3.0E-73
sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1 17 376 3.0E-72
sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1 17 376 7.0E-71
sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1 17 376 3.0E-70
sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=3 SV=1 17 376 2.0E-68
sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1 12 370 3.0E-63
sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1 14 382 1.0E-46
sp|P94400|YCIC_BACSU Putative metal chaperone YciC OS=Bacillus subtilis (strain 168) GN=yciC PE=2 SV=1 17 278 7.0E-36
sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3 18 343 1.0E-31
sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1 17 235 1.0E-30
sp|Q9HZQ2|COBW_PSEAE Protein CobW OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cobW PE=3 SV=1 16 237 1.0E-28
sp|P31521|P47K_PSECL 47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1 13 293 1.0E-27
sp|P29937|COBW_PSEDE Protein CobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3 17 262 4.0E-22
sp|A6NM15|CBWD7_HUMAN Putative COBW domain-containing protein 7 OS=Homo sapiens GN=CBWD7 PE=5 SV=3 130 371 3.0E-21
sp|P33030|YEIR_ECOLI Zinc-binding GTPase YeiR OS=Escherichia coli (strain K12) GN=yeiR PE=1 SV=2 22 254 3.0E-11
sp|P22042|YTR2_SPIAU Uncharacterized protein in trpE 3'region (Fragment) OS=Spirochaeta aurantia PE=4 SV=1 19 58 9.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 33 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|101830
MASDDEVPTLIDSQPTRVPLTIICGFLGAGKSTLLKYILTERHGYRIAVIMNEFGDTADIEAKAINISSGDDPTA
EQSEEFLELPNGCLCCSIKDTGAAAIEKLMQRKGAFDYILLETTGLADPGPIAAIFWHNEEFAMGLGRDIGLDGV
VCVVDAVFGQQQMTEDHATDPMNVGESLRQIAGSDVVILNKTDLATPEALAHTENLIRQVNPAAPIHRTIKGQID
LKHIIGISAYSKPPQSDATNPSLAPHVHECDDTHTHDTKPNTNHYEFRGISSLRVECPPLSPQAFDNFDRWIRTV
LWENHLPEEESSQNRDLLVLRCKGLLSTTSGQRYVLQGVRNLYEIEEIKETDDDLGIPDEGKIVLIGKGLDDVVR
HSLEAVLNSRG*
Coding >AgabiH97|101830
ATGGCCTCAGACGACGAAGTCCCGACCCTCATCGATTCTCAACCGACCCGCGTTCCTCTGACTATCATCTGCGGC
TTCCTCGGCGCCGGCAAATCCACTCTCCTCAAATATATTCTCACGGAGCGTCATGGATATCGGATAGCCGTCATC
ATGAACGAATTTGGCGATACTGCTGATATCGAAGCGAAAGCCATCAATATCTCTTCCGGAGACGACCCAACCGCG
GAACAATCAGAAGAATTTTTAGAACTTCCAAATGGTTGTTTATGCTGTAGCATTAAAGACACCGGCGCGGCAGCA
ATTGAAAAGCTTATGCAGCGTAAGGGCGCTTTTGATTATATTCTTTTGGAAACAACTGGGCTCGCGGATCCTGGT
CCCATCGCTGCCATATTTTGGCACAATGAGGAATTCGCTATGGGTCTTGGTCGCGATATAGGACTTGATGGAGTG
GTTTGTGTTGTTGACGCTGTCTTCGGACAACAGCAAATGACAGAAGATCATGCCACTGACCCAATGAACGTCGGC
GAGAGCCTTCGACAAATTGCTGGCTCAGACGTAGTGATCTTGAACAAAACTGATCTCGCAACACCCGAAGCTCTC
GCTCATACAGAAAACTTAATCCGACAAGTTAATCCCGCCGCACCAATTCATCGGACCATTAAAGGTCAAATCGAT
CTGAAGCATATCATTGGAATATCCGCATATTCGAAACCGCCACAATCAGACGCCACAAACCCGTCCTTGGCACCC
CATGTCCACGAATGTGATGATACCCACACTCATGACACGAAACCCAATACCAATCATTACGAGTTCCGCGGAATT
TCAAGTTTACGGGTGGAATGTCCTCCATTGTCCCCTCAAGCATTCGATAACTTTGATCGATGGATTCGCACGGTT
CTCTGGGAGAATCATCTACCAGAGGAAGAGTCATCGCAGAATCGTGATTTGTTGGTACTCCGATGTAAAGGCTTG
CTATCAACCACGTCTGGACAACGATATGTCTTGCAGGGTGTACGGAATCTATACGAGATAGAGGAGATTAAGGAG
ACGGACGACGATTTAGGGATACCCGATGAAGGCAAGATTGTACTCATAGGTAAAGGCTTGGACGATGTCGTACGA
CATAGTCTCGAGGCTGTATTGAATTCACGAGGATAG
Transcript >AgabiH97|101830
ATGGCCTCAGACGACGAAGTCCCGACCCTCATCGATTCTCAACCGACCCGCGTTCCTCTGACTATCATCTGCGGC
TTCCTCGGCGCCGGCAAATCCACTCTCCTCAAATATATTCTCACGGAGCGTCATGGATATCGGATAGCCGTCATC
ATGAACGAATTTGGCGATACTGCTGATATCGAAGCGAAAGCCATCAATATCTCTTCCGGAGACGACCCAACCGCG
GAACAATCAGAAGAATTTTTAGAACTTCCAAATGGTTGTTTATGCTGTAGCATTAAAGACACCGGCGCGGCAGCA
ATTGAAAAGCTTATGCAGCGTAAGGGCGCTTTTGATTATATTCTTTTGGAAACAACTGGGCTCGCGGATCCTGGT
CCCATCGCTGCCATATTTTGGCACAATGAGGAATTCGCTATGGGTCTTGGTCGCGATATAGGACTTGATGGAGTG
GTTTGTGTTGTTGACGCTGTCTTCGGACAACAGCAAATGACAGAAGATCATGCCACTGACCCAATGAACGTCGGC
GAGAGCCTTCGACAAATTGCTGGCTCAGACGTAGTGATCTTGAACAAAACTGATCTCGCAACACCCGAAGCTCTC
GCTCATACAGAAAACTTAATCCGACAAGTTAATCCCGCCGCACCAATTCATCGGACCATTAAAGGTCAAATCGAT
CTGAAGCATATCATTGGAATATCCGCATATTCGAAACCGCCACAATCAGACGCCACAAACCCGTCCTTGGCACCC
CATGTCCACGAATGTGATGATACCCACACTCATGACACGAAACCCAATACCAATCATTACGAGTTCCGCGGAATT
TCAAGTTTACGGGTGGAATGTCCTCCATTGTCCCCTCAAGCATTCGATAACTTTGATCGATGGATTCGCACGGTT
CTCTGGGAGAATCATCTACCAGAGGAAGAGTCATCGCAGAATCGTGATTTGTTGGTACTCCGATGTAAAGGCTTG
CTATCAACCACGTCTGGACAACGATATGTCTTGCAGGGTGTACGGAATCTATACGAGATAGAGGAGATTAAGGAG
ACGGACGACGATTTAGGGATACCCGATGAAGGCAAGATTGTACTCATAGGTAAAGGCTTGGACGATGTCGTACGA
CATAGTCTCGAGGCTGTATTGAATTCACGAGGATAG
Gene >AgabiH97|101830
ATGGCCTCAGACGACGAAGTCCCGTACTACCTCTTTCCTTCTCCTCCTTACCACGAGCTCATGTCTCTCCTAGGA
CCCTCATCGATTCTCAACCGACCCGCGTTCCTCTGACTATCATCTGCGGCTTCCTCGGCGCCGGCAAATCCACTC
TCCTCAAGTGCGCACCTTTCTCACTTCACAGAGCGCATCCATCTCATCATTCAAAGATATATTCTCACGGAGCGT
CATGGATATCGGATAGCCGTCATCATGAACGAATTTGGCGATACTGCTGTGAGCAAAGCCTAGAGCGTACCGACG
CCACCCAGCTGATATATTGAATACCCAGGATATCGAAGGTATGCGGCCTTCCTCACGAGAATAACAAAATCTAAG
GCGCTTCTCGAACACAATAGCGAAAGCCATCAATATCTCTTCCGGAGACGACCCAACCGCGGAACAATCAGAAGA
ATTTTTAGAACTTCCAAATGGTTGTTTATGCTGTAGCATTAAAGACACCGGCGCGGCAGCAATTGAAAAGCTTAT
GCAGCGTAAGGGCGCTTTTGATTATATTCTTTTGGAAACAACTGGGCTCGCGGATCCTGGTCAGTCATCCATCCA
TCAACAATGGAGGGATCATCTTGACATTTTCGTTTGCAGGTCCCATCGCTGCCATATTTTGGCACAATGAGGAAT
TCGCTATGGGTCTTGGTCGCGATATAGGACTTGATGGAGTGGTTTGTGTTGTTGACGCTGTCTTCGGACAACAGG
TATTTTTTTTTTCATCAGCGCCCGGCTCGTTGCTCCTCGCTGACGCCGCAAAATAGCAAATGACAGAAGATCATG
CCACTGACCCAATGAACGTCGGCGAGAGCCTTCGGTACGTGATTGACATTCATTTATCATCTTCAAAATAAATTG
TCAAACCCGAAATCAGACAAATTGCTGGCTCAGACGTAGTGATCTTGAACAAAACTGATCTCGCAACACCCGAAG
CTCTCGCTCATACAGAAAACTTAATCCGACAAGTTAATCCCGCCGCACCAATTCATCGGACCATTAAAGGTCAAA
TCGATCTGAAGCATATCATTGGAATATCCGCATATTCGAAACCGCCACAATCAGACGCCACAAACCCGTCCTTGG
CACCCCATGTCCACGAATGTGATGATACCCACACTCATGACACGAAACCCAATACCAATCATTACGAGTTCCGCG
GAATTTCAAGTTTACGGGTGGAATGTCCTCCATTGTCCCCTCAAGCATTCGATAACTTTGATCGATGGATTCGCA
CGGTTCTCTGGGAGAATCATCTACCAGAGGAAGAGTCATCGCAGAATCGTGATTTGTTGGTACTCCGATGTAAAG
GCTTGCTATCAACCACGTCTGGACAACGATATGTCTTGCAGGGTGTACGGAATCTATACGAGATAGAGGAGATTA
AGGAGACGGACGACGATTTAGGGATACCCGATGAAGGCAAGATTGTACTCATAGGTAAAGGCTTGGACGATGTCG
TACGACATAGTCTCGAGGCTGTATTGAATTCACGAGGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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