© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|101460 |
| Gene name | |
| Location | scaffold_7:1107155..1109365 |
| Strand | - |
| Gene length (bp) | 2210 |
| Transcript length (bp) | 1785 |
| Coding sequence length (bp) | 1785 |
| Protein length (aa) | 595 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18158 | AidB_N | Adaptive response protein AidB N-terminal domain | 9.8E-18 | 9 | 163 |
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 1.8E-16 | 296 | 460 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 1.7E-10 | 173 | 285 |
| PF08028 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain | 8.8E-06 | 312 | 445 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9XWZ2|ACD11_CAEEL | Acyl-CoA dehydrogenase family member 11 OS=Caenorhabditis elegans GN=acdh-11 PE=1 SV=1 | 6 | 590 | 2.0E-94 |
| sp|P33224|AIDB_ECOLI | Putative acyl-CoA dehydrogenase AidB OS=Escherichia coli (strain K12) GN=aidB PE=1 SV=3 | 8 | 458 | 7.0E-29 |
| sp|Q5LLW7|DMDC_RUEPO | 3-methylmercaptopropionyl-CoA dehydrogenase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=dmdC PE=1 SV=1 | 70 | 494 | 4.0E-26 |
| sp|P45857|ACDB_BACSU | Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 | 143 | 463 | 8.0E-14 |
| sp|C3UVB0|ACD_DESML | Glutaryl-CoA dehydrogenase OS=Desulfococcus multivorans GN=Acd PE=1 SV=1 | 138 | 341 | 4.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9XWZ2|ACD11_CAEEL | Acyl-CoA dehydrogenase family member 11 OS=Caenorhabditis elegans GN=acdh-11 PE=1 SV=1 | 6 | 590 | 2.0E-94 |
| sp|P33224|AIDB_ECOLI | Putative acyl-CoA dehydrogenase AidB OS=Escherichia coli (strain K12) GN=aidB PE=1 SV=3 | 8 | 458 | 7.0E-29 |
| sp|Q5LLW7|DMDC_RUEPO | 3-methylmercaptopropionyl-CoA dehydrogenase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=dmdC PE=1 SV=1 | 70 | 494 | 4.0E-26 |
| sp|P45857|ACDB_BACSU | Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 | 143 | 463 | 8.0E-14 |
| sp|C3UVB0|ACD_DESML | Glutaryl-CoA dehydrogenase OS=Desulfococcus multivorans GN=Acd PE=1 SV=1 | 138 | 341 | 4.0E-13 |
| sp|Q8JZN5|ACAD9_MOUSE | Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=1 SV=2 | 141 | 454 | 5.0E-12 |
| sp|Q8HXY7|ACADV_MACFA | Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1 | 141 | 454 | 8.0E-12 |
| sp|G3KIM8|ACRC_CLOPR | Acryloyl-CoA reductase (NADH) OS=Clostridium propionicum GN=acrC PE=1 SV=1 | 139 | 460 | 6.0E-11 |
| sp|P45953|ACADV_RAT | Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1 | 133 | 454 | 1.0E-10 |
| sp|P49748|ACADV_HUMAN | Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1 | 141 | 454 | 2.0E-10 |
| sp|Q06319|ACDS_MEGEL | Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1 | 40 | 451 | 3.0E-10 |
| sp|Q9FS88|MBCD_SOLTU | 2-methylacyl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum GN=2MBCD PE=1 SV=2 | 147 | 460 | 5.0E-10 |
| sp|O34421|ACDC_BACSU | Probable acyl-CoA dehydrogenase YngJ OS=Bacillus subtilis (strain 168) GN=yngJ PE=3 SV=1 | 146 | 460 | 6.0E-10 |
| sp|P48818|ACADV_BOVIN | Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3 | 141 | 454 | 6.0E-10 |
| sp|P50544|ACADV_MOUSE | Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3 | 133 | 454 | 8.0E-10 |
| sp|Q0NXR6|ACAD8_BOVIN | Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1 | 143 | 460 | 9.0E-10 |
| sp|P45867|ACDA_BACSU | Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1 | 146 | 462 | 1.0E-08 |
| sp|Q9FS87|IVD_SOLTU | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum GN=IVD PE=1 SV=2 | 147 | 460 | 1.0E-08 |
| sp|Q2LQN9|CH1CO_SYNAS | Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase OS=Syntrophus aciditrophicus (strain SB) GN=SYN_02587 PE=1 SV=1 | 133 | 460 | 3.0E-08 |
| sp|Q9UKU7|ACAD8_HUMAN | Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1 | 133 | 460 | 3.0E-08 |
| sp|Q5RAS0|ACADS_PONAB | Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1 | 146 | 459 | 5.0E-08 |
| sp|P16219|ACADS_HUMAN | Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1 | 146 | 459 | 8.0E-08 |
| sp|Q75IM9|IVD_ORYSJ | Isovaleryl-CoA dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os05g0125500 PE=2 SV=2 | 147 | 460 | 8.0E-08 |
| sp|Q9H845|ACAD9_HUMAN | Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1 | 141 | 454 | 1.0E-07 |
| sp|Q07417|ACADS_MOUSE | Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=1 SV=2 | 174 | 459 | 1.0E-07 |
| sp|P70584|ACDSB_RAT | Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1 | 147 | 451 | 2.0E-07 |
| sp|P15651|ACADS_RAT | Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2 | 174 | 459 | 2.0E-07 |
| sp|Q9DBL1|ACDSB_MOUSE | Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1 | 148 | 451 | 1.0E-06 |
| sp|P34275|IVD_CAEEL | Probable acyl-CoA dehydrogenase 6 OS=Caenorhabditis elegans GN=acdh-6 PE=3 SV=2 | 116 | 452 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus|Peroxisome | Peroxisomal targeting signal | 0.3892 | 0.5521 | 0.0475 | 0.016 | 0.1373 | 0.0379 | 0.0245 | 0.042 | 0.0731 | 0.9082 |
| Orthofinder run ID | 1 |
| Orthogroup | 732 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|101460 MRIEEGFQQIPFPQQNVYTSDTVLPALLKRLLPKSIFEEIEPDLVRLGNDVINRIRDLGAEAHPPKLVQYDQWGR RVDELHTSEGWRNLKAIAQQEGIPAIFYERKYREHSRIYGFAKAALMAGDTHLVFCPLSMTDGAARTIELIGNQE AKNDILPRLISRDPSVAFTAGQWMTERPGGSDVSLTETTAVSTGQSARYGPEYSLNGLKWFSSATDGDISVALAR TGTVEAGSRGLSLFLIPVRLPLFPSPSEPKPTSTSNNIFLHRLKNKIGTHALPTAELTLEGAEGYLLGNLNQGVK NITPVLNITRIWSSFHSVGNLRKCLGIATSYATVRRIQSGKVLLKDAPIHVAQLAEVNLLYRALCHFAFGAVELL GKAECGSGNKEEQEDVQRRLRILTPVLKGYTTEKACSGMEEAMVALGGAGYMEENGFGLCIRDALVEKIWEGTTT VLALDLVRSVADGKNLLAFISWACSIVASTPGVLTPGFEASFKLLDLAINELSTAYDAPISPLVPRPALLLVGSI ASSIYLLEHAIWSHTHKELEADVDIEVFNRWIVQSGLEGYTEAVKKAKDAGKAGARVKANEKIVFGAKL* |
| Coding | >AgabiH97|101460 ATGCGCATTGAAGAAGGCTTTCAACAGATTCCTTTTCCTCAACAAAATGTGTATACCTCGGACACGGTTCTCCCA GCACTATTGAAGCGCTTGTTGCCCAAGAGTATATTTGAGGAAATCGAACCGGACCTCGTCCGCCTTGGAAACGAC GTCATCAATCGCATTCGCGACCTGGGGGCCGAAGCACATCCACCAAAGCTGGTTCAGTACGACCAATGGGGCCGT CGCGTAGACGAACTACACACGAGTGAGGGATGGCGTAATCTTAAGGCCATTGCTCAACAAGAAGGTATTCCTGCC ATCTTCTACGAGCGTAAATACCGAGAACATAGTCGGATCTACGGTTTTGCGAAAGCTGCTTTGATGGCTGGGGAC ACGCATCTGGTCTTTTGCCCACTTAGCATGACAGATGGGGCTGCTCGCACCATCGAGTTGATTGGAAATCAGGAA GCAAAGAATGACATCCTCCCTCGACTCATCAGTCGGGACCCCTCGGTAGCCTTCACGGCGGGCCAGTGGATGACA GAGCGACCGGGAGGCTCAGACGTTTCCTTGACGGAGACCACCGCAGTTTCAACTGGGCAGTCAGCACGCTATGGT CCCGAGTACTCATTGAACGGTCTCAAGTGGTTTTCCAGTGCCACAGACGGTGACATATCTGTAGCGTTGGCCCGT ACTGGCACCGTCGAAGCTGGTTCTCGAGGCCTCTCACTCTTCTTGATTCCAGTACGACTTCCACTCTTCCCGTCC CCGTCTGAACCAAAACCAACGTCTACGAGCAACAACATTTTCTTGCACAGGCTCAAGAACAAGATTGGTACTCAT GCGTTACCGACTGCTGAACTCACACTTGAAGGTGCCGAAGGCTATTTACTTGGCAACCTAAATCAAGGTGTCAAG AATATAACACCGGTTCTCAATATTACCCGCATTTGGTCGTCCTTTCACAGCGTTGGAAACTTGCGTAAATGTCTT GGAATTGCAACTTCGTACGCCACGGTTCGGCGTATTCAAAGTGGAAAGGTGCTTTTAAAGGATGCGCCTATCCAT GTGGCTCAGCTTGCTGAAGTGAATCTGTTATATCGTGCATTATGCCACTTTGCTTTCGGTGCTGTTGAGCTGTTG GGCAAGGCCGAATGTGGCTCCGGTAATAAGGAAGAGCAAGAGGATGTTCAGAGGCGGTTGAGAATATTAACGCCT GTGTTGAAGGGATATACAACTGAGAAAGCTTGTTCTGGTATGGAGGAAGCTATGGTGGCCCTGGGAGGTGCTGGT TATATGGAAGAAAATGGCTTTGGCTTGTGCATCCGTGATGCTTTGGTCGAAAAGATCTGGGAGGGAACAACAACC GTTCTCGCGCTGGATCTGGTGAGGTCAGTAGCGGATGGTAAGAACTTGCTAGCTTTTATATCATGGGCGTGCTCT ATCGTAGCTTCTACACCTGGTGTTCTCACTCCCGGGTTCGAGGCCTCATTCAAGCTGCTTGATCTTGCCATCAAC GAACTGTCCACTGCATACGATGCTCCCATTTCTCCCTTGGTTCCCCGCCCGGCACTCCTCTTGGTTGGTTCCATC GCGTCAAGTATCTATCTTCTTGAACATGCAATATGGTCTCATACCCACAAAGAACTTGAGGCAGATGTGGACATT GAGGTTTTCAATAGGTGGATTGTACAGAGCGGTTTAGAGGGTTACACTGAAGCGGTGAAGAAGGCGAAGGACGCT GGGAAAGCAGGAGCAAGAGTGAAAGCAAATGAAAAGATAGTATTCGGTGCGAAACTGTGA |
| Transcript | >AgabiH97|101460 ATGCGCATTGAAGAAGGCTTTCAACAGATTCCTTTTCCTCAACAAAATGTGTATACCTCGGACACGGTTCTCCCA GCACTATTGAAGCGCTTGTTGCCCAAGAGTATATTTGAGGAAATCGAACCGGACCTCGTCCGCCTTGGAAACGAC GTCATCAATCGCATTCGCGACCTGGGGGCCGAAGCACATCCACCAAAGCTGGTTCAGTACGACCAATGGGGCCGT CGCGTAGACGAACTACACACGAGTGAGGGATGGCGTAATCTTAAGGCCATTGCTCAACAAGAAGGTATTCCTGCC ATCTTCTACGAGCGTAAATACCGAGAACATAGTCGGATCTACGGTTTTGCGAAAGCTGCTTTGATGGCTGGGGAC ACGCATCTGGTCTTTTGCCCACTTAGCATGACAGATGGGGCTGCTCGCACCATCGAGTTGATTGGAAATCAGGAA GCAAAGAATGACATCCTCCCTCGACTCATCAGTCGGGACCCCTCGGTAGCCTTCACGGCGGGCCAGTGGATGACA GAGCGACCGGGAGGCTCAGACGTTTCCTTGACGGAGACCACCGCAGTTTCAACTGGGCAGTCAGCACGCTATGGT CCCGAGTACTCATTGAACGGTCTCAAGTGGTTTTCCAGTGCCACAGACGGTGACATATCTGTAGCGTTGGCCCGT ACTGGCACCGTCGAAGCTGGTTCTCGAGGCCTCTCACTCTTCTTGATTCCAGTACGACTTCCACTCTTCCCGTCC CCGTCTGAACCAAAACCAACGTCTACGAGCAACAACATTTTCTTGCACAGGCTCAAGAACAAGATTGGTACTCAT GCGTTACCGACTGCTGAACTCACACTTGAAGGTGCCGAAGGCTATTTACTTGGCAACCTAAATCAAGGTGTCAAG AATATAACACCGGTTCTCAATATTACCCGCATTTGGTCGTCCTTTCACAGCGTTGGAAACTTGCGTAAATGTCTT GGAATTGCAACTTCGTACGCCACGGTTCGGCGTATTCAAAGTGGAAAGGTGCTTTTAAAGGATGCGCCTATCCAT GTGGCTCAGCTTGCTGAAGTGAATCTGTTATATCGTGCATTATGCCACTTTGCTTTCGGTGCTGTTGAGCTGTTG GGCAAGGCCGAATGTGGCTCCGGTAATAAGGAAGAGCAAGAGGATGTTCAGAGGCGGTTGAGAATATTAACGCCT GTGTTGAAGGGATATACAACTGAGAAAGCTTGTTCTGGTATGGAGGAAGCTATGGTGGCCCTGGGAGGTGCTGGT TATATGGAAGAAAATGGCTTTGGCTTGTGCATCCGTGATGCTTTGGTCGAAAAGATCTGGGAGGGAACAACAACC GTTCTCGCGCTGGATCTGGTGAGGTCAGTAGCGGATGGTAAGAACTTGCTAGCTTTTATATCATGGGCGTGCTCT ATCGTAGCTTCTACACCTGGTGTTCTCACTCCCGGGTTCGAGGCCTCATTCAAGCTGCTTGATCTTGCCATCAAC GAACTGTCCACTGCATACGATGCTCCCATTTCTCCCTTGGTTCCCCGCCCGGCACTCCTCTTGGTTGGTTCCATC GCGTCAAGTATCTATCTTCTTGAACATGCAATATGGTCTCATACCCACAAAGAACTTGAGGCAGATGTGGACATT GAGGTTTTCAATAGGTGGATTGTACAGAGCGGTTTAGAGGGTTACACTGAAGCGGTGAAGAAGGCGAAGGACGCT GGGAAAGCAGGAGCAAGAGTGAAAGCAAATGAAAAGATAGTATTCGGTGCGAAACTGTGA |
| Gene | >AgabiH97|101460 ATGCGCATTGAAGAAGGCTTTCAACAGGCAAGTCCTATTGTTTCTCTCCTGCAGTCTTCTAAAGTATTGTCCCTA GATTCCTTTTCCTCAACAAAATGTGTATACCTCGGACACGGTTCTCCCAGCACTATTGAAGCGCTTGTTGCCCAA GAGGTGATAGTGATTCGAAATCCACATCCCTCGATACTGAATCCCCGCCGACAGTATATTTGAGGAAATCGAACC GGACCTCGTCCGCCTTGGAAACGACGTCATCAATCGTCAGTATCATTTCACTGCACAAATCTCTGCAGAACACGA ATTTATACCAATGTAGGCATTCGCGACCTGGGGGCCGAAGCACATCCACCAAAGCTGGTTCAGTACGACCAATGG GGCCGTCGCGTAGACGAACTACACACGAGTGAGGGATGGCGTAATCTTAAGGCCATTGCTCAACAAGAAGGTATT CCTGCCATCTTCTACGAGCGTAAATACCGAGAACATAGTCGGATCTACGGTTTTGCGAAAGCTGCTTTGATGGCT GGGGACACGCATCTGGTATGTCATGACTACACCCCTCGCTTCCCTTTCTGAGGTCAGTCGGCTGTTCCAGGTCTT TTGCCCACTTAGCATGACAGATGGGGCTGCTCGCACCATCGAGTTGATTGGAAATCAGGAAGCAAAGAATGACAT CCTCCCTCGACTCATCAGGTAGCGTAATCCCTCGGCTTAACTGCATTGTTATGGCTGACATCACGCAGTCGGGAC CCCTCGGTAGCCTTCACGGCGGGCCAGTGGATGACAGAGGTGCGTTTTATCCTTTTATAAGCAATCTGATTGCTC ATGGTCCCTTCAATAGCGACCGGGAGGCTCAGACGTTTCCTTGACGGAGACCACCGCAGTTTCAACTGGGCAGTC AGCACGCTATGGTCCCGAGTACTCATTGAACGGTCTCAAGTGGTTTTCCAGTGCCACAGACGGTGACATATCTGT AGCGTTGGCCCGTACTGGCACCGTCGAAGCTGGTTCTCGAGGCCTCTCACTCTTCTTGATTCCAGTACGACTTCC ACTCTTCCCGTCCCCGTCTGAACCAAAACCAACGTCTACGAGCAACAACATTTTCTTGCACAGGCTCAAGAACAA GATTGGTACTCATGCGTTACCGACTGCTGAACTCACACTTGAAGGTGCCGAAGGCTATTTACTTGGCAACCTAAA TCAAGGTGTCAAGAATATAACACCGGTTCTCAATATTACCCGCATTTGGTCGTCCTTTCACAGCGTTGGAAACTT GCGTAAATGTCTTGGAATTGCAACTTCGTACGCCACGGTTCGGCGTATTCAAAGTGGAAAGGTGCTTTTAAAGGA TGCGCCTATCCATGTGGCTCAGCTTGCTGAAGTGAATCTGTTATATCGTGCATTATGCCACTTTGCTTTCGGTGC TGTTGAGCTGTTGGGCAAGGCCGAATGTGGCTCCGGTAATAAGGAAGAGCAAGAGGATGTTCAGAGGCGGTTGAG AATATTAACGCCTGTGTTGAAGGGATATACAACTGAGAAAGCTTGTTCTGGTATGGAGGAAGCTATGGTGGCCCT GGGAGGTGCTGGTTATATGGAAGAAAATGGCTTTGGCTTGTGCATCCGTGATGCTTTGGTCGAAAAGTATGTGTT CAAGCTATGGCGAAAAGACTACGGAACTGACCACTATACCAAACGGCAGGATCTGGGAGGGAACAACAACCGTTC TCGCGCTGGATCTGGTGAGGTCAGTAGCGGATGGTAAGAACTTGCTAGCTTTTATATCAGTATGTATCTCTTCAA TGATATGCTTAATGAAGTTGTTCATATATTTCTGGCAGTGGGCGTGCTCTATCGTAGCTTCTACACCTGGTGTTC TCACTCCCGGGTTCGAGGCCTCATTCAAGCTGCTTGATCTTGCCATCAACGAACTGTCCACTGCATACGATGCTC CCATTTCTCCCTTGGTTCCCCGCCCGGCACTCCTCTTGGTTGGTTCCATCGCGTCAAGTATCTATCTTCTTGAAC ATGCAATATGGTCTCATACCCACAAAGAACTTGAGGCAGATGTGGACATTGAGGTTTTCAATAGGTGGATTGTAC AGAGCGGTTTAGAGGGTTACACTGAAGCGGTGAAGAAGGCGAAGGACGCTGGGAAAGCAGGAGCAAGAGTGAAAG CAAATGAAAAGATAGTATTCGGTGCGAAACTGTGA |