© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|100930 |
| Gene name | |
| Location | scaffold_7:986103..986675 |
| Strand | - |
| Gene length (bp) | 572 |
| Transcript length (bp) | 408 |
| Coding sequence length (bp) | 408 |
| Protein length (aa) | 136 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12597 | Cox20 | Cytochrome c oxidase assembly protein COX20 | 1.2E-20 | 38 | 116 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005743 | mitochondrial inner membrane | Yes |
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | Yes |
| GO:0008150 | biological_process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0031966 | mitochondrial membrane | No |
| GO:0017004 | cytochrome complex assembly | No |
| GO:0019866 | organelle inner membrane | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0009987 | cellular process | No |
| GO:0031090 | organelle membrane | No |
| GO:0033108 | mitochondrial respiratory chain complex assembly | No |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016043 | cellular component organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0005575 | cellular_component | No |
| GO:0008535 | respiratory chain complex IV assembly | No |
| GO:0065003 | protein-containing complex assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|100930 MASSDPQRNPTTEEEQNAINLPSSLPQPTGNLAYDSVQSALNVTSIPCSRESLLAGIAAGVGIGVVRGLTLPPIK AGNWAVATFALTSLISWQICQNKIKREREQVATVLEQAPRRRAVASGNDNDSSSSATTNS* |
| Coding | >AgabiH97|100930 ATGGCGTCGTCCGATCCACAACGAAACCCAACAACTGAAGAAGAGCAAAATGCAATTAATCTTCCATCTAGTCTA CCCCAACCAACCGGAAATCTCGCTTACGACTCTGTTCAAAGCGCGTTAAATGTTACTTCTATCCCATGTTCACGT GAAAGTCTACTTGCTGGGATTGCTGCTGGAGTGGGTATAGGTGTCGTTCGTGGTCTAACGCTTCCACCTATAAAG GCTGGAAATTGGGCTGTGGCGACATTTGCACTTACTTCATTGATATCATGGCAGATATGTCAGAATAAAATCAAG CGAGAGCGTGAACAAGTTGCTACTGTATTAGAACAAGCCCCTCGACGACGAGCAGTTGCTAGTGGAAATGACAAT GATTCATCATCATCCGCCACTACAAATTCTTGA |
| Transcript | >AgabiH97|100930 ATGGCGTCGTCCGATCCACAACGAAACCCAACAACTGAAGAAGAGCAAAATGCAATTAATCTTCCATCTAGTCTA CCCCAACCAACCGGAAATCTCGCTTACGACTCTGTTCAAAGCGCGTTAAATGTTACTTCTATCCCATGTTCACGT GAAAGTCTACTTGCTGGGATTGCTGCTGGAGTGGGTATAGGTGTCGTTCGTGGTCTAACGCTTCCACCTATAAAG GCTGGAAATTGGGCTGTGGCGACATTTGCACTTACTTCATTGATATCATGGCAGATATGTCAGAATAAAATCAAG CGAGAGCGTGAACAAGTTGCTACTGTATTAGAACAAGCCCCTCGACGACGAGCAGTTGCTAGTGGAAATGACAAT GATTCATCATCATCCGCCACTACAAATTCTTGA |
| Gene | >AgabiH97|100930 ATGGCGTCGTCCGATCCACAACGAAACCCAACAACTGAAGAAGAGCAAAATGCAATTAATCTTCCATCTAGTCTA CCCCAACCAACCGGAAATCTCGCTTACGACTCTGTTCAAGTGAGTTTCAAATTCGTTATTCTATATGCTTGACCA TAGCTTTTGATCGTTCAGAGCGCGTTAAATGTTACTTCTATCCCATGTTCACGTGAAAGTCTACTTGCTGGGATT GCTGCTGGAGTGGGTATAGGTGTCGTTCGTGGTCTAACGCTTCGTATGTCCCTCAAAGTTTCGAAAAAACCATTT TCCTTACAAACATGTATCAGCACCTATAAAGGCTGGAAATTGGGCTGTGGCGACATTTGCACTTACTTCATTGAT ATCATGGTAAAACACTTCTCTTTCATTCAATCTATATACTTCGAAACTAATCACTATAAAACAGGCAGATATGTC AGAATAAAATCAAGCGAGAGCGTGAACAAGTTGCTACTGTATTAGAACAAGCCCCTCGACGACGAGCAGTTGCTA GTGGAAATGACAATGATTCATCATCATCCGCCACTACAAATTCTTGA |