Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|100170
Gene name
Locationscaffold_7:812825..813278
Strand+
Gene length (bp)453
Transcript length (bp)348
Coding sequence length (bp)348
Protein length (aa) 116

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 42 62 20

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|100170
MSSLYILFIVSGFVLFQLSNGVPIDHPTSSQGMSFYLDISKLFDLQVLFDLGVFIAILLYTVKHWGNIKARISSL
LPQFPIVSASMGWRWITAMRDSDHVVESREGDEEATSGEA*
Coding >AgabiH97|100170
ATGTCCTCATTATACATTCTCTTCATCGTGTCGGGCTTCGTGCTTTTTCAGCTCAGCAATGGTGTACCAATCGAC
CACCCCACCTCCAGTCAAGGCATGTCATTTTACCTGGACATCTCAAAATTGTTTGACTTGCAAGTACTTTTTGAT
CTGGGAGTGTTCATTGCTATTCTACTATACACCGTCAAGCACTGGGGAAACATTAAGGCGAGGATTTCTAGTCTG
TTGCCTCAATTTCCTATAGTCTCAGCGTCAATGGGATGGCGTTGGATCACTGCTATGCGCGACAGTGACCATGTC
GTGGAGTCGCGGGAAGGAGACGAAGAGGCTACATCTGGGGAAGCTTGA
Transcript >AgabiH97|100170
ATGTCCTCATTATACATTCTCTTCATCGTGTCGGGCTTCGTGCTTTTTCAGCTCAGCAATGGTGTACCAATCGAC
CACCCCACCTCCAGTCAAGGCATGTCATTTTACCTGGACATCTCAAAATTGTTTGACTTGCAAGTACTTTTTGAT
CTGGGAGTGTTCATTGCTATTCTACTATACACCGTCAAGCACTGGGGAAACATTAAGGCGAGGATTTCTAGTCTG
TTGCCTCAATTTCCTATAGTCTCAGCGTCAATGGGATGGCGTTGGATCACTGCTATGCGCGACAGTGACCATGTC
GTGGAGTCGCGGGAAGGAGACGAAGAGGCTACATCTGGGGAAGCTTGA
Gene >AgabiH97|100170
ATGTCCTCATTATACATTCTCTTCATCGTGTCGGGCTTCGTGCTTTTTCAGCTCAGCAATGGTGTACCAATCGAC
CACCCCACCTCCAGTCAAGGTAAATCCATTCTTTGTCGGACGTCGTCTCTCTGATCACATCCCACAGGCATGTCA
TTTTACCTGGACATCTCAAAATTGTTTGACTTGCAAGTACTTTTTGATCTGGGAGGTACGCCGCACATCATACCG
ACCTTTGCCCTTCCATGTTATTAAGTTTACCCCCAAGTGTTCATTGCTATTCTACTATACACCGTCAAGCACTGG
GGAAACATTAAGGCGAGGATTTCTAGTCTGTTGCCTCAATTTCCTATAGTCTCAGCGTCAATGGGATGGCGTTGG
ATCACTGCTATGCGCGACAGTGACCATGTCGTGGAGTCGCGGGAAGGAGACGAAGAGGCTACATCTGGGGAAGCT
TGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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