Protein ID | AgabiH97|100120 |
Gene name | |
Location | scaffold_7:795694..796543 |
Strand | - |
Gene length (bp) | 849 |
Transcript length (bp) | 798 |
Coding sequence length (bp) | 798 |
Protein length (aa) | 266 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00959 | Phage_lysozyme | Phage lysozyme | 4.2E-13 | 133 | 247 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ATA2|A7466_ARTBC | Uncharacterized secreted protein ARB_07466 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07466 PE=1 SV=1 | 4 | 97 | 2.0E-22 |
sp|P11187|LYS_BPPH2 | Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 | 107 | 253 | 3.0E-18 |
sp|P07540|LYS_BPPZA | Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 | 107 | 253 | 5.0E-18 |
sp|Q37896|LYS_BPB03 | Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 | 107 | 258 | 4.0E-17 |
sp|Q9T1T5|LYS_BPAPS | Probable lysozyme OS=Acyrthosiphon pisum secondary endosymbiont phage 1 GN=13 PE=3 SV=1 | 114 | 256 | 1.0E-12 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4ATA2|A7466_ARTBC | Uncharacterized secreted protein ARB_07466 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_07466 PE=1 SV=1 | 4 | 97 | 2.0E-22 |
sp|P11187|LYS_BPPH2 | Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1 | 107 | 253 | 3.0E-18 |
sp|P07540|LYS_BPPZA | Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1 | 107 | 253 | 5.0E-18 |
sp|Q37896|LYS_BPB03 | Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1 | 107 | 258 | 4.0E-17 |
sp|Q9T1T5|LYS_BPAPS | Probable lysozyme OS=Acyrthosiphon pisum secondary endosymbiont phage 1 GN=13 PE=3 SV=1 | 114 | 256 | 1.0E-12 |
sp|O80292|LYS_BPPS1 | Lysozyme OS=Bacteriophage PS119 GN=19 PE=3 SV=1 | 118 | 249 | 5.0E-11 |
sp|P62693|LYS_BPPHV | Lysozyme OS=Lactococcus phage phivML3 GN=L3 PE=3 SV=1 | 112 | 253 | 1.0E-09 |
sp|P62692|LYS_BPLC2 | Lysozyme OS=Lactococcus phage c2 GN=L3 PE=3 SV=1 | 112 | 253 | 1.0E-09 |
sp|P78285|LYSD_ECOLI | Lysozyme RrrD OS=Escherichia coli (strain K12) GN=rrrD PE=1 SV=1 | 118 | 249 | 2.0E-09 |
sp|P27359|LYS_BPP21 | Lysozyme OS=Enterobacteria phage P21 GN=R PE=1 SV=1 | 118 | 249 | 5.0E-09 |
sp|P09963|ENLYS_BPP22 | Endolysin OS=Enterobacteria phage P22 GN=19 PE=1 SV=1 | 112 | 253 | 1.0E-08 |
sp|P10439|LYS_BPPA2 | Lysozyme OS=Enterobacteria phage PA-2 GN=15 PE=3 SV=1 | 118 | 249 | 2.0E-08 |
sp|O80288|LYS_BPPS3 | Lysozyme OS=Bacteriophage PS34 GN=19 PE=3 SV=1 | 118 | 249 | 3.0E-08 |
sp|Q9T1X2|ENLYS_BPMU | Endolysin OS=Enterobacteria phage Mu GN=lys PE=2 SV=1 | 117 | 253 | 3.0E-07 |
sp|P51728|LYS_BPHC1 | Lysozyme OS=Haemophilus phage HP1 (strain HP1c1) GN=lys PE=3 SV=1 | 105 | 252 | 1.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016998 | cell wall macromolecule catabolic process | Yes |
GO:0009253 | peptidoglycan catabolic process | Yes |
GO:0003796 | lysozyme activity | Yes |
GO:1901575 | organic substance catabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0030203 | glycosaminoglycan metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0009056 | catabolic process | No |
GO:0008150 | biological_process | No |
GO:0071704 | organic substance metabolic process | No |
GO:1901565 | organonitrogen compound catabolic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0044248 | cellular catabolic process | No |
GO:0061783 | peptidoglycan muralytic activity | No |
GO:0006026 | aminoglycan catabolic process | No |
GO:0016787 | hydrolase activity | No |
GO:0006022 | aminoglycan metabolic process | No |
GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:1901135 | carbohydrate derivative metabolic process | No |
GO:0000270 | peptidoglycan metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0044036 | cell wall macromolecule metabolic process | No |
GO:1901136 | carbohydrate derivative catabolic process | No |
GO:0009987 | cellular process | No |
GO:0006027 | glycosaminoglycan catabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044265 | cellular macromolecule catabolic process | No |
GO:0009057 | macromolecule catabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 18 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 11.56 | 3.94 | 19.18 |
Initials | Initials knots | 4.89 | 1.80 | 7.99 |
Pileal_Stipeal_center | Stage I stipe center | 4.38 | 1.59 | 7.16 |
Pileal_Stipeal_shell | Stage I stipe shell | 7.08 | 2.96 | 11.21 |
DIF_stipe_center | Stage II stipe center | 3.94 | 1.40 | 6.47 |
DIF_stipe_shell | Stage II stipe shell | 3.87 | 1.33 | 6.41 |
DIF_stipe_skin | Stage II stipe skin | 2.82 | 0.86 | 4.79 |
DIF_cap_skin | Stage II cap skin | 5.86 | 2.32 | 9.41 |
DIF_cap_tissue | Stage II cap tissue | 5.87 | 2.36 | 9.38 |
DIF_gill_tissue | Stage II gill tissue | 6.24 | 2.54 | 9.93 |
YFB_stipe_center | Young fruiting body stipe center | 4.48 | 1.62 | 7.34 |
YFB_stipe_shell | Young fruiting body stipe shell | 3.76 | 1.34 | 6.17 |
YFB_stipe_skin | Young fruiting body stipe skin | 4.56 | 1.66 | 7.46 |
YFB_cap_skin | Young fruiting body cap skin | 4.51 | 1.63 | 7.40 |
YFB_cap_tissue | Young fruiting body cap tissue | 6.05 | 2.42 | 9.68 |
YFB_gill_tissue | Young fruiting body gill tissue | 4.77 | 1.67 | 7.88 |
YFB_veil | Young fruiting body veil | 5.55 | 2.15 | 8.94 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.170359 | no |
Casing | YFB_stipe_center | 0.019442 | yes |
Casing | YFB_stipe_shell | 0.006032 | yes |
Casing | YFB_stipe_skin | 0.023415 | yes |
Casing | YFB_cap_skin | 0.022111 | yes |
Casing | YFB_cap_tissue | 0.148373 | no |
Casing | YFB_gill_tissue | 0.041603 | yes |
Casing | YFB_veil | 0.087416 | no |
Casing | Initials | 0.043339 | yes |
Casing | Pileal_Stipeal_center | 0.020790 | yes |
Casing | Pileal_Stipeal_shell | 0.296701 | no |
Casing | DIF_stipe_center | 0.009123 | yes |
Casing | DIF_stipe_shell | 0.006742 | yes |
Casing | DIF_stipe_skin | 0.001625 | yes |
Casing | DIF_cap_skin | 0.116571 | no |
Casing | DIF_cap_tissue | 0.120821 | no |
DIF_gill_tissue | YFB_stipe_center | 0.562644 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.294143 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.584608 | no |
DIF_gill_tissue | YFB_cap_skin | 0.571885 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.970950 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.671264 | no |
DIF_gill_tissue | YFB_veil | 0.873854 | no |
YFB_stipe_center | YFB_stipe_shell | 0.807607 | no |
YFB_stipe_center | YFB_stipe_skin | 0.984605 | no |
YFB_stipe_center | YFB_cap_skin | 0.992129 | no |
YFB_stipe_center | YFB_cap_tissue | 0.607681 | no |
YFB_stipe_center | YFB_gill_tissue | 0.943135 | no |
YFB_stipe_center | YFB_veil | 0.746751 | no |
YFB_stipe_shell | YFB_stipe_skin | 0.780903 | no |
YFB_stipe_shell | YFB_cap_skin | 0.794256 | no |
YFB_stipe_shell | YFB_cap_tissue | 0.330386 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.721456 | no |
YFB_stipe_shell | YFB_veil | 0.463813 | no |
YFB_stipe_skin | YFB_cap_skin | 0.990086 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.633834 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.959769 | no |
YFB_stipe_skin | YFB_veil | 0.769622 | no |
YFB_cap_skin | YFB_cap_tissue | 0.621727 | no |
YFB_cap_skin | YFB_gill_tissue | 0.951460 | no |
YFB_cap_skin | YFB_veil | 0.760901 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.714508 | no |
YFB_cap_tissue | YFB_veil | 0.910430 | no |
YFB_gill_tissue | YFB_veil | 0.842619 | no |
Initials | DIF_gill_tissue | 0.702845 | no |
Initials | YFB_stipe_center | 0.917576 | no |
Initials | YFB_stipe_shell | 0.678270 | no |
Initials | YFB_stipe_skin | 0.935680 | no |
Initials | YFB_cap_skin | 0.924048 | no |
Initials | YFB_cap_tissue | 0.752354 | no |
Initials | YFB_gill_tissue | 0.978597 | no |
Initials | YFB_veil | 0.870218 | no |
Initials | Pileal_Stipeal_center | 0.892176 | no |
Initials | Pileal_Stipeal_shell | 0.484405 | no |
Initials | DIF_stipe_center | 0.752092 | no |
Initials | DIF_stipe_shell | 0.726970 | no |
Initials | DIF_stipe_skin | 0.290256 | no |
Initials | DIF_cap_skin | 0.795954 | no |
Initials | DIF_cap_tissue | 0.795220 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.517682 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.979616 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.838159 | no |
Pileal_Stipeal_center | YFB_stipe_skin | 0.963114 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.971675 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.569651 | no |
Pileal_Stipeal_center | YFB_gill_tissue | 0.919692 | no |
Pileal_Stipeal_center | YFB_veil | 0.710508 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.309634 | no |
Pileal_Stipeal_center | DIF_stipe_center | 0.895323 | no |
Pileal_Stipeal_center | DIF_stipe_shell | 0.873766 | no |
Pileal_Stipeal_center | DIF_stipe_skin | 0.431979 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.619957 | no |
Pileal_Stipeal_center | DIF_cap_tissue | 0.621124 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.856656 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.346713 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.141124 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.370347 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.361031 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.816567 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.455042 | no |
Pileal_Stipeal_shell | YFB_veil | 0.681117 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.188282 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.161831 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.035765 | yes |
Pileal_Stipeal_shell | DIF_cap_skin | 0.766629 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.770809 | no |
DIF_stipe_center | DIF_gill_tissue | 0.361539 | no |
DIF_stipe_center | YFB_stipe_center | 0.872062 | no |
DIF_stipe_center | YFB_stipe_shell | 0.956653 | no |
DIF_stipe_center | YFB_stipe_skin | 0.849214 | no |
DIF_stipe_center | YFB_cap_skin | 0.858905 | no |
DIF_stipe_center | YFB_cap_tissue | 0.404519 | no |
DIF_stipe_center | YFB_gill_tissue | 0.790718 | no |
DIF_stipe_center | YFB_veil | 0.545080 | no |
DIF_stipe_center | DIF_stipe_shell | 0.983934 | no |
DIF_stipe_center | DIF_stipe_skin | 0.594591 | no |
DIF_stipe_center | DIF_cap_skin | 0.454283 | no |
DIF_stipe_center | DIF_cap_tissue | 0.455910 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.324416 | no |
DIF_stipe_shell | YFB_stipe_center | 0.848329 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.972656 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.823100 | no |
DIF_stipe_shell | YFB_cap_skin | 0.833635 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.369030 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.764433 | no |
DIF_stipe_shell | YFB_veil | 0.508032 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.614639 | no |
DIF_stipe_shell | DIF_cap_skin | 0.415001 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.416582 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.078590 | no |
DIF_stipe_skin | YFB_stipe_center | 0.399688 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.660730 | no |
DIF_stipe_skin | YFB_stipe_skin | 0.374726 | no |
DIF_stipe_skin | YFB_cap_skin | 0.390721 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.094162 | no |
DIF_stipe_skin | YFB_gill_tissue | 0.329583 | no |
DIF_stipe_skin | YFB_veil | 0.147817 | no |
DIF_stipe_skin | DIF_cap_skin | 0.106349 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.106812 | no |
DIF_cap_skin | DIF_gill_tissue | 0.938417 | no |
DIF_cap_skin | YFB_stipe_center | 0.661113 | no |
DIF_cap_skin | YFB_stipe_shell | 0.374244 | no |
DIF_cap_skin | YFB_stipe_skin | 0.684104 | no |
DIF_cap_skin | YFB_cap_skin | 0.667525 | no |
DIF_cap_skin | YFB_cap_tissue | 0.968647 | no |
DIF_cap_skin | YFB_gill_tissue | 0.763178 | no |
DIF_cap_skin | YFB_veil | 0.946641 | no |
DIF_cap_skin | DIF_cap_tissue | 0.996550 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.938259 | no |
DIF_cap_tissue | YFB_stipe_center | 0.658135 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.377188 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.682658 | no |
DIF_cap_tissue | YFB_cap_skin | 0.665704 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.970292 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.760394 | no |
DIF_cap_tissue | YFB_veil | 0.943093 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|100120 MLKTLSILFVSVGLAQAAVNGVCSVNGTPGVCIDTSICSSGGGTSASGFCPNDPSNIRCCTKTSCSTGGNCRWTS QCASGNTVSGFCPGPADFKCCLGSSGCAAHAVNTATINLIKEFEGFVPSPAPDPIGLPTVGYGHLCRNSGCSEVP FSFPLSTTTATTLLHSDLVTFQNCITADVNDNIRLNANQYGALVSWAFNEGCGAAGSSTLIARLNNGEDPNTVAA QELPKWVFAGGQVLPGLVRRRDAEIALFRTASSVIANPPC* |
Coding | >AgabiH97|100120 ATGTTGAAAACTCTTTCTATTCTGTTCGTCTCTGTTGGTCTTGCCCAGGCTGCTGTGAATGGAGTTTGCTCCGTT AACGGCACCCCAGGAGTTTGCATCGACACTTCTATTTGCAGCTCAGGTGGCGGTACATCCGCCTCTGGCTTTTGT CCCAATGATCCTAGCAATATCAGGTGCTGCACTAAAACTTCATGCAGCACTGGCGGTAACTGCCGCTGGACTAGC CAGTGCGCCAGTGGTAACACCGTATCAGGCTTTTGCCCTGGTCCCGCCGACTTCAAGTGCTGTCTAGGCAGCTCA GGCTGTGCAGCCCACGCGGTCAACACTGCTACAATCAACCTCATTAAGGAATTCGAGGGCTTTGTACCCAGTCCC GCTCCTGATCCAATCGGCCTTCCCACTGTCGGTTACGGTCATCTCTGTCGCAACTCTGGCTGTAGCGAAGTACCC TTCTCCTTCCCTCTCTCCACCACCACTGCCACCACTCTCTTGCATTCGGACTTGGTGACCTTCCAAAACTGTATC ACCGCCGACGTCAATGATAACATCCGACTCAACGCAAATCAATACGGAGCTCTCGTGTCTTGGGCCTTCAATGAA GGATGCGGTGCTGCAGGCAGTTCCACTTTGATTGCCAGACTCAATAACGGGGAAGACCCAAATACCGTTGCTGCG CAGGAGTTGCCGAAATGGGTGTTCGCTGGTGGACAAGTATTACCCGGACTGGTCAGGCGTAGGGACGCTGAAATT GCTTTGTTCAGGACTGCTTCGAGTGTTATTGCTAACCCACCTTGCTAG |
Transcript | >AgabiH97|100120 ATGTTGAAAACTCTTTCTATTCTGTTCGTCTCTGTTGGTCTTGCCCAGGCTGCTGTGAATGGAGTTTGCTCCGTT AACGGCACCCCAGGAGTTTGCATCGACACTTCTATTTGCAGCTCAGGTGGCGGTACATCCGCCTCTGGCTTTTGT CCCAATGATCCTAGCAATATCAGGTGCTGCACTAAAACTTCATGCAGCACTGGCGGTAACTGCCGCTGGACTAGC CAGTGCGCCAGTGGTAACACCGTATCAGGCTTTTGCCCTGGTCCCGCCGACTTCAAGTGCTGTCTAGGCAGCTCA GGCTGTGCAGCCCACGCGGTCAACACTGCTACAATCAACCTCATTAAGGAATTCGAGGGCTTTGTACCCAGTCCC GCTCCTGATCCAATCGGCCTTCCCACTGTCGGTTACGGTCATCTCTGTCGCAACTCTGGCTGTAGCGAAGTACCC TTCTCCTTCCCTCTCTCCACCACCACTGCCACCACTCTCTTGCATTCGGACTTGGTGACCTTCCAAAACTGTATC ACCGCCGACGTCAATGATAACATCCGACTCAACGCAAATCAATACGGAGCTCTCGTGTCTTGGGCCTTCAATGAA GGATGCGGTGCTGCAGGCAGTTCCACTTTGATTGCCAGACTCAATAACGGGGAAGACCCAAATACCGTTGCTGCG CAGGAGTTGCCGAAATGGGTGTTCGCTGGTGGACAAGTATTACCCGGACTGGTCAGGCGTAGGGACGCTGAAATT GCTTTGTTCAGGACTGCTTCGAGTGTTATTGCTAACCCACCTTGCTAG |
Gene | >AgabiH97|100120 ATGTTGAAAACTCTTTCTATTCTGTTCGTCTCTGTTGGTCTTGCCCAGGCTGCTGTGAATGGAGTTTGCTCCGTT AACGGCACCCCAGGAGTTTGCATCGACACTTCTATTTGCAGCTCAGGTGGCGGTACATCCGCCTCTGGCTTTTGT CCCAATGATCCTAGCAATATCAGGTGCTGCACTAAAACTTCATGCAGCACTGGCGGTAACTGCCGCTGGACTAGC CAGTGCGCCAGTGGTAACACCGTATCAGGTTTGTCCATTTTTTATACACTTTTATAATAATGATTGAATATATTG GTAGGCTTTTGCCCTGGTCCCGCCGACTTCAAGTGCTGTCTAGGCAGCTCAGGCTGTGCAGCCCACGCGGTCAAC ACTGCTACAATCAACCTCATTAAGGAATTCGAGGGCTTTGTACCCAGTCCCGCTCCTGATCCAATCGGCCTTCCC ACTGTCGGTTACGGTCATCTCTGTCGCAACTCTGGCTGTAGCGAAGTACCCTTCTCCTTCCCTCTCTCCACCACC ACTGCCACCACTCTCTTGCATTCGGACTTGGTGACCTTCCAAAACTGTATCACCGCCGACGTCAATGATAACATC CGACTCAACGCAAATCAATACGGAGCTCTCGTGTCTTGGGCCTTCAATGAAGGATGCGGTGCTGCAGGCAGTTCC ACTTTGATTGCCAGACTCAATAACGGGGAAGACCCAAATACCGTTGCTGCGCAGGAGTTGCCGAAATGGGTGTTC GCTGGTGGACAAGTATTACCCGGACTGGTCAGGCGTAGGGACGCTGAAATTGCTTTGTTCAGGACTGCTTCGAGT GTTATTGCTAACCCACCTTGCTAG |