Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|099490
Gene name
Locationscaffold_7:651302..652868
Strand+
Gene length (bp)1566
Transcript length (bp)1269
Coding sequence length (bp)1269
Protein length (aa) 423

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 4.3E-06 12 53
PF00646 F-box F-box domain 1.9E-04 13 51

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6498 0.484 0.0459 0.0547 0.1454 0.0106 0.1307 0.179 0.1847 0.0015

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1593
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016750
Agaricus bisporus var bisporus H39 AgabiH39|049060
Agaricus bisporus var bisporus H39 AgabiH39|099480
Agaricus bisporus var bisporus H39 AgabiH39|099490
Agaricus bisporus var bisporus H39 AgabiH39|099500
Agaricus bisporus var bisporus H39 AgabiH39|400700
Agaricus bisporus var bisporus H39 AgabiH39|400800
Agaricus bisporus var bisporus H97 AgabiH97|016680
Agaricus bisporus var bisporus H97 AgabiH97|016750
Agaricus bisporus var bisporus H97 AgabiH97|049060
Agaricus bisporus var bisporus H97 AgabiH97|099480
Agaricus bisporus var bisporus H97 AgabiH97|099490 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|099500
Agaricus bisporus var bisporus H97 AgabiH97|099810
Agaricus bisporus var bisporus H97 AgabiH97|099830

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|099490
MEDTYQTVQGLTSLPTEVLSLILIHVDGSDISALQQTCQTLHSVTMTRQFWYNRIHRLCEKHASPPEEELEEYST
AELKQWTMRRIHARSTSPVKLQIRTGRDPSMLRFHENTFLIPGGRWLLKPHSNLTIYFVDLDSSNLKLHPLTAIN
VPLSRLPCRLKEIRATLVAQIIATFRCRERDTGFTHAFNNRYFAQGRGDYLLTEPAVEIFDYRQALGCFNYPTLM
DSHTLPLSEDCSTHLEFINEDVLAIYCDVTDTYHIFNIESPTSFKLLHEIKLPVLPFDFSRTYWTPEASLMTFTS
PTFSTLIQRNMERIYGLVIPHDSKLRPWTVEIGRFIGSKKGYFTFKPGIFISLLYNSETGTNSRLVHEWDYTCES
SCSEPTPLSPLEQEVDQFWLPSAFDEDTGRSVSFQSHKLRVADFASL*
Coding >AgabiH97|099490
ATGGAAGACACTTATCAAACTGTTCAAGGACTCACATCACTTCCCACTGAGGTGCTCTCTCTAATCCTTATACAT
GTGGATGGCTCAGACATATCCGCTCTCCAGCAAACGTGCCAAACTTTGCATTCTGTTACAATGACGCGGCAATTC
TGGTATAATCGTATACATCGGCTCTGTGAAAAACACGCCTCCCCACCTGAAGAAGAGTTAGAAGAATATTCTACA
GCTGAACTCAAGCAATGGACCATGCGACGAATCCATGCTAGGAGTACTTCCCCTGTGAAGTTACAGATTCGCACT
GGTCGAGATCCCTCCATGCTTAGATTTCACGAGAATACATTTCTCATTCCAGGTGGTCGATGGCTTCTAAAACCT
CATAGCAATCTGACCATATACTTCGTCGACTTGGACAGCAGTAATCTAAAACTACACCCACTCACCGCGATTAAC
GTTCCGCTTTCAAGGCTCCCTTGTCGACTCAAGGAGATCCGTGCGACTCTCGTGGCGCAGATTATTGCTACGTTT
CGTTGTAGGGAGCGCGATACTGGTTTTACACATGCCTTTAATAATCGTTATTTTGCTCAAGGCCGAGGAGATTAC
TTGTTGACGGAACCGGCGGTGGAGATTTTCGATTATAGGCAAGCCTTGGGATGCTTTAATTATCCGACTTTGATG
GACAGCCATACCCTTCCCCTCAGTGAAGATTGCTCTACCCATTTGGAGTTCATCAACGAGGACGTTCTTGCTATC
TACTGCGACGTAACAGATACCTATCATATCTTCAACATAGAGTCACCAACGTCGTTCAAGCTTTTGCATGAAATC
AAACTGCCCGTGTTACCATTTGACTTTTCCAGGACCTATTGGACACCTGAAGCCTCGCTGATGACATTCACCTCG
CCCACATTTTCCACTCTCATCCAAAGAAATATGGAAAGAATTTATGGGCTCGTTATACCTCATGACAGCAAGCTT
CGTCCATGGACAGTCGAGATAGGAAGATTCATAGGAAGCAAGAAGGGGTACTTCACCTTCAAGCCTGGTATTTTC
ATCTCACTGTTGTATAACTCCGAGACAGGCACAAATTCACGCCTTGTTCACGAATGGGACTACACATGTGAATCA
TCCTGTAGTGAACCGACTCCTCTATCGCCTCTGGAGCAGGAGGTTGATCAGTTTTGGTTACCCAGTGCCTTTGAT
GAAGATACAGGGCGCTCAGTATCTTTTCAGAGTCATAAATTGCGAGTGGCCGACTTTGCATCGTTGTAG
Transcript >AgabiH97|099490
ATGGAAGACACTTATCAAACTGTTCAAGGACTCACATCACTTCCCACTGAGGTGCTCTCTCTAATCCTTATACAT
GTGGATGGCTCAGACATATCCGCTCTCCAGCAAACGTGCCAAACTTTGCATTCTGTTACAATGACGCGGCAATTC
TGGTATAATCGTATACATCGGCTCTGTGAAAAACACGCCTCCCCACCTGAAGAAGAGTTAGAAGAATATTCTACA
GCTGAACTCAAGCAATGGACCATGCGACGAATCCATGCTAGGAGTACTTCCCCTGTGAAGTTACAGATTCGCACT
GGTCGAGATCCCTCCATGCTTAGATTTCACGAGAATACATTTCTCATTCCAGGTGGTCGATGGCTTCTAAAACCT
CATAGCAATCTGACCATATACTTCGTCGACTTGGACAGCAGTAATCTAAAACTACACCCACTCACCGCGATTAAC
GTTCCGCTTTCAAGGCTCCCTTGTCGACTCAAGGAGATCCGTGCGACTCTCGTGGCGCAGATTATTGCTACGTTT
CGTTGTAGGGAGCGCGATACTGGTTTTACACATGCCTTTAATAATCGTTATTTTGCTCAAGGCCGAGGAGATTAC
TTGTTGACGGAACCGGCGGTGGAGATTTTCGATTATAGGCAAGCCTTGGGATGCTTTAATTATCCGACTTTGATG
GACAGCCATACCCTTCCCCTCAGTGAAGATTGCTCTACCCATTTGGAGTTCATCAACGAGGACGTTCTTGCTATC
TACTGCGACGTAACAGATACCTATCATATCTTCAACATAGAGTCACCAACGTCGTTCAAGCTTTTGCATGAAATC
AAACTGCCCGTGTTACCATTTGACTTTTCCAGGACCTATTGGACACCTGAAGCCTCGCTGATGACATTCACCTCG
CCCACATTTTCCACTCTCATCCAAAGAAATATGGAAAGAATTTATGGGCTCGTTATACCTCATGACAGCAAGCTT
CGTCCATGGACAGTCGAGATAGGAAGATTCATAGGAAGCAAGAAGGGGTACTTCACCTTCAAGCCTGGTATTTTC
ATCTCACTGTTGTATAACTCCGAGACAGGCACAAATTCACGCCTTGTTCACGAATGGGACTACACATGTGAATCA
TCCTGTAGTGAACCGACTCCTCTATCGCCTCTGGAGCAGGAGGTTGATCAGTTTTGGTTACCCAGTGCCTTTGAT
GAAGATACAGGGCGCTCAGTATCTTTTCAGAGTCATAAATTGCGAGTGGCCGACTTTGCATCGTTGTAG
Gene >AgabiH97|099490
ATGGAAGACACTTATCAAACTGTTCAAGGACTCACATCACTTCCCACTGAGGTGCTCTCTCTAATCCTTATACAT
GTGGATGGCTCAGACATATCCGCTCTCCAGCAAGTGCGTTTTGTCTCCCCTTCTTGTTGCAAACGAGTGGATATC
TGATATTTAGAAGACGTGCCAAACTTTGCATTCTGTTACAATGACGCGGCAATTCTGGTATAATCGTATACATCG
GCTCTGTGAAAAACACGCCTCCCCACCTGAAGAAGAGTTAGAAGAATATTCTACAGCTGAACTCAAGCAATGGAC
CATGCGACGAATCCATGCTAGGAGTACTTCCCCTGTGAAGTTACAGATTCGCACTGGTCGAGATCCCTCCATGCT
TAGATTTCACGAGAATACATTTCTCATTCCAGGTGGTCGATGGCTTCTAAAACCTCATAGCAATCTGACCATATA
CTTCGTCGACTTGGACAGCAGTAATCTAAAACTACACCCACTGTTAGATCCCAAGAAGGATAACCCATGCGTCAG
CAATCATAAAACTGTCGGATATCGCATATTGATAGACCATAAAGCACCGCGATTAACGTTCCGCTTTCAAGGCTC
CCTTGTCGACTCAAGTGCGTCAGTCAAGTGTCATATCCAGCGGGACTTACTGCCTCTCAGGGAGATCCGGTGATC
TACCGTTTACCTATGCGTATATCTATCAGGTCGATCTGATTGGTCATGGTGCCAGTGCGACTCTCGTGGCGCAGA
TTATTGCTACGTTTCGTTGTAGGGAGCGCGATACTGGTTTTACACATGCCTTTAATAATCGTTATTTTGCTCAAG
GCCGAGGAGATTACTTGTTGACGGAACCGGCGGTGGAGATTTTCGATTATAGGCAAGCCTTGGGATGCTTTAATT
ATCCGACTTTGATGGACAGCCATACCCTTCCCCTCAGTGAAGATTGCTCTACCGTATGTGCATTCTCTGATCTTG
CCTTGTACTTCTATTCATATCAATTCTTATGAACAGCATTTGGAGTTCATCAACGAGGACGTTCTTGCTATCTAC
TGCGACGTAACAGATACCTATCATATCTTCAACATAGAGTCACCAACGTCGTTCAAGCTTTTGCATGAAATCAAA
CTGCCCGTGTTACCATTTGACTTTTCCAGGACCTATTGGACACCTGAAGCCTCGCTGATGACATTCACCTCGCCC
ACATTTTCCACTCTCATCCAAAGAAATATGGAAAGAATTTATGGGCTCGTTATACCTCATGACAGCAAGCTTCGT
CCATGGACAGTCGAGATAGGAAGATTCATAGGAAGCAAGAAGGGGTACTTCACCTTCAAGCCTGGTATTTTCATC
TCACTGTTGTATAACTCCGAGACAGGCACAAATTCACGCCTTGTTCACGAATGGGACTACACATGTGAATCATCC
TGTAGTGAACCGACTCCTCTATCGCCTCTGGAGCAGGAGGTTGATCAGTTTTGGTTACCCAGTGCCTTTGATGAA
GATACAGGGCGCTCAGTATCTTTTCAGAGTCATAAATTGCGAGTGGCCGACTTTGCATCGTTGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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