© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|099390 |
| Gene name | |
| Location | scaffold_7:629652..631364 |
| Strand | + |
| Gene length (bp) | 1712 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01095 | Pectinesterase | Pectinesterase | 1.5E-31 | 175 | 381 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A1DBT4|PMEA_NEOFI | Probable pectinesterase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pmeA PE=3 SV=1 | 38 | 372 | 2.0E-23 |
| sp|Q9FF78|PME46_ARATH | Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 | 146 | 391 | 3.0E-23 |
| sp|B0Y9F9|PMEA_ASPFC | Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=pmeA PE=3 SV=1 | 61 | 363 | 1.0E-22 |
| sp|Q4WBT5|PMEA_ASPFU | Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmeA PE=3 SV=1 | 61 | 363 | 1.0E-22 |
| sp|A2QK82|PMEA_ASPNC | Probable pectinesterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pmeA PE=3 SV=1 | 61 | 372 | 3.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A1DBT4|PMEA_NEOFI | Probable pectinesterase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pmeA PE=3 SV=1 | 38 | 372 | 2.0E-23 |
| sp|Q9FF78|PME46_ARATH | Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1 | 146 | 391 | 3.0E-23 |
| sp|B0Y9F9|PMEA_ASPFC | Probable pectinesterase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=pmeA PE=3 SV=1 | 61 | 363 | 1.0E-22 |
| sp|Q4WBT5|PMEA_ASPFU | Probable pectinesterase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmeA PE=3 SV=1 | 61 | 363 | 1.0E-22 |
| sp|A2QK82|PMEA_ASPNC | Probable pectinesterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pmeA PE=3 SV=1 | 61 | 372 | 3.0E-22 |
| sp|Q9FJ21|PME58_ARATH | Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 | 55 | 379 | 3.0E-21 |
| sp|Q9SRX4|PME7_ARATH | Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 | 175 | 380 | 1.0E-20 |
| sp|Q8RXK7|PME41_ARATH | Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 | 175 | 385 | 1.0E-20 |
| sp|O22256|PME20_ARATH | Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 | 207 | 380 | 1.0E-19 |
| sp|Q9FHN5|PME59_ARATH | Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1 | 176 | 380 | 4.0E-19 |
| sp|O22149|PME17_ARATH | Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2 | 55 | 380 | 5.0E-19 |
| sp|Q84WM7|PPME1_ARATH | Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 | 53 | 378 | 1.0E-18 |
| sp|Q9LY19|PME48_ARATH | Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2 | 53 | 378 | 3.0E-18 |
| sp|Q84R10|PME36_ARATH | Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2 | 176 | 380 | 5.0E-18 |
| sp|Q3E8Z8|PME28_ARATH | Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 | 176 | 379 | 6.0E-18 |
| sp|Q94CB1|PME25_ARATH | Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 | 176 | 380 | 1.0E-17 |
| sp|Q5MFV6|PME37_ARATH | Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2 | 55 | 380 | 2.0E-17 |
| sp|Q9FF77|PME47_ARATH | Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 | 176 | 380 | 2.0E-17 |
| sp|P41510|PME_BRANA | Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1 | 181 | 380 | 2.0E-17 |
| sp|Q9FHN4|PME60_ARATH | Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1 | 176 | 380 | 2.0E-17 |
| sp|Q5B7U0|PMEA_EMENI | Pectinesterase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pmeA PE=1 SV=1 | 61 | 372 | 2.0E-17 |
| sp|Q1JPL7|PME18_ARATH | Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3 | 24 | 387 | 3.0E-17 |
| sp|Q9M9W7|PME22_ARATH | Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1 | 73 | 380 | 4.0E-17 |
| sp|O04887|PME2_CITSI | Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 | 33 | 380 | 4.0E-17 |
| sp|B8NPS7|PMEA_ASPFN | Probable pectinesterase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=pmeA PE=3 SV=1 | 61 | 363 | 5.0E-17 |
| sp|Q2UBD9|PMEA_ASPOR | Probable pectinesterase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pmeA PE=3 SV=1 | 61 | 363 | 5.0E-17 |
| sp|Q9SG77|PME24_ARATH | Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1 | 146 | 381 | 7.0E-17 |
| sp|Q8GXA1|PME23_ARATH | Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3 | 55 | 370 | 4.0E-16 |
| sp|Q8GX86|PME21_ARATH | Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 | 176 | 364 | 4.0E-16 |
| sp|Q43043|PME_PETIN | Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1 | 56 | 364 | 5.0E-16 |
| sp|Q9LUL8|PME26_ARATH | Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1 | 207 | 381 | 6.0E-16 |
| sp|P09607|PME21_SOLLC | Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 | 176 | 394 | 7.0E-16 |
| sp|Q9ZQA4|PME14_ARATH | Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 | 30 | 379 | 7.0E-16 |
| sp|O81320|PME38_ARATH | Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=3 SV=1 | 207 | 380 | 7.0E-16 |
| sp|Q43143|PMEU1_SOLLC | Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 | 180 | 379 | 8.0E-16 |
| sp|O23038|PME8_ARATH | Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 | 34 | 374 | 1.0E-15 |
| sp|Q42608|PME_BRACM | Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1 | 181 | 380 | 1.0E-15 |
| sp|O81415|PME39_ARATH | Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1 | 180 | 380 | 1.0E-15 |
| sp|Q9SMY7|PME44_ARATH | Probable pectinesterase/pectinesterase inhibitor 44 OS=Arabidopsis thaliana GN=PME44 PE=2 SV=2 | 186 | 380 | 2.0E-15 |
| sp|O48711|PME12_ARATH | Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 | 194 | 379 | 2.0E-15 |
| sp|Q7Y201|PME13_ARATH | Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2 | 194 | 380 | 2.0E-15 |
| sp|P83947|PME1_FICPW | Pectinesterase/pectinesterase inhibitor OS=Ficus pumila var. awkeotsang PE=1 SV=1 | 176 | 380 | 4.0E-15 |
| sp|Q96576|PME3_SOLLC | Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1 | 176 | 380 | 4.0E-15 |
| sp|Q9STY3|PME33_ARATH | Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1 | 171 | 364 | 7.0E-15 |
| sp|P83218|PME_DAUCA | Pectinesterase OS=Daucus carota PE=1 SV=1 | 176 | 379 | 7.0E-15 |
| sp|Q5MFV8|PME5_ARATH | Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=1 SV=2 | 181 | 380 | 7.0E-15 |
| sp|Q9LVQ0|PME31_ARATH | Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1 | 48 | 378 | 1.0E-14 |
| sp|O49298|PME6_ARATH | Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1 | 176 | 381 | 1.0E-14 |
| sp|Q43062|PME_PRUPE | Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 | 186 | 389 | 1.0E-14 |
| sp|Q96575|PME22_SOLLC | Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1 | 176 | 394 | 2.0E-14 |
| sp|Q12535|PME_ASPAC | Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1 | 43 | 369 | 2.0E-14 |
| sp|Q43111|PME3_PHAVU | Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1 | 176 | 381 | 2.0E-14 |
| sp|Q9LYT5|PME35_ARATH | Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1 | 64 | 380 | 3.0E-14 |
| sp|O04886|PME1_CITSI | Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 | 176 | 379 | 4.0E-14 |
| sp|P14280|PME1_SOLLC | Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 | 176 | 394 | 4.0E-14 |
| sp|P85076|PME_ACTDE | Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 | 174 | 364 | 5.0E-14 |
| sp|O81301|PME40_ARATH | Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1 | 194 | 380 | 5.0E-14 |
| sp|Q9SIJ9|PME11_ARATH | Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 | 61 | 378 | 6.0E-14 |
| sp|Q43867|PME1_ARATH | Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=1 SV=1 | 207 | 380 | 7.0E-14 |
| sp|P83948|PME3_CITSI | Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 | 176 | 379 | 8.0E-14 |
| sp|Q9FKF3|PME63_ARATH | Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2 | 59 | 378 | 1.0E-13 |
| sp|Q9FK05|PME61_ARATH | Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=2 SV=1 | 176 | 380 | 1.0E-13 |
| sp|O80722|PME4_ARATH | Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1 | 55 | 379 | 2.0E-13 |
| sp|Q9ZQA3|PME15_ARATH | Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 | 59 | 378 | 2.0E-13 |
| sp|Q8VYZ3|PME53_ARATH | Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 | 44 | 378 | 3.0E-13 |
| sp|Q42920|PME_MEDSA | Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1 | 56 | 364 | 4.0E-13 |
| sp|Q9LY18|PME49_ARATH | Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 | 48 | 378 | 4.0E-13 |
| sp|Q9SMY6|PME45_ARATH | Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1 | 194 | 380 | 4.0E-13 |
| sp|Q9LY17|PME50_ARATH | Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 | 59 | 378 | 5.0E-13 |
| sp|O49006|PME3_ARATH | Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 | 176 | 379 | 6.0E-13 |
| sp|Q9LXK7|PME32_ARATH | Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 | 176 | 389 | 6.0E-13 |
| sp|Q9M3B0|PME34_ARATH | Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 | 176 | 380 | 7.0E-13 |
| sp|O23447|PME43_ARATH | Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1 | 176 | 351 | 1.0E-12 |
| sp|Q9SKX2|PME16_ARATH | Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1 | 62 | 380 | 1.0E-12 |
| sp|Q1PEC0|PME42_ARATH | Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1 | 195 | 380 | 1.0E-11 |
| sp|Q8L7Q7|PME64_ARATH | Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2 | 210 | 365 | 1.0E-11 |
| sp|D8VPP5|AL11A_OLEEU | Pectinesterase 1 OS=Olea europaea PE=1 SV=1 | 193 | 377 | 5.0E-11 |
| sp|B2VPR8|AL11B_OLEEU | Pectinesterase 2 OS=Olea europaea PE=1 SV=1 | 193 | 377 | 6.0E-11 |
| sp|Q3E989|PME54_ARATH | Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1 | 194 | 380 | 8.0E-11 |
| sp|Q3EAY9|PME30_ARATH | Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1 | 195 | 365 | 1.0E-10 |
| sp|Q9LXD9|PME51_ARATH | Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1 | 105 | 369 | 2.0E-10 |
| sp|P17872|PME_ASPTU | Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1 | 179 | 359 | 3.0E-10 |
| sp|P0C1A8|PMEA_DICCH | Pectinesterase A OS=Dickeya chrysanthemi GN=pemA PE=1 SV=1 | 50 | 332 | 5.0E-10 |
| sp|Q42534|PME2_ARATH | Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 | 176 | 379 | 7.0E-10 |
| sp|Q84JX1|PME19_ARATH | Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1 | 195 | 380 | 7.0E-10 |
| sp|Q4PSQ5|PME66_ARATH | Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2 | 211 | 378 | 1.0E-09 |
| sp|P0C1A9|PMEA_DICD3 | Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1 | 50 | 376 | 2.0E-09 |
| sp|Q4PT34|PME56_ARATH | Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1 | 194 | 334 | 1.0E-08 |
| sp|O64479|PME10_ARATH | Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1 | 211 | 379 | 2.0E-08 |
| sp|Q4PSN0|PME29_ARATH | Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1 | 48 | 379 | 8.0E-08 |
| sp|Q8LPF3|PME68_ARATH | Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 | 44 | 384 | 3.0E-06 |
| sp|O04953|PME52_ARATH | Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2 | 192 | 395 | 3.0E-06 |
| sp|Q9FM79|PME62_ARATH | Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 | 109 | 378 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042545 | cell wall modification | Yes |
| GO:0030599 | pectinesterase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016043 | cellular component organization | No |
| GO:0045229 | external encapsulating structure organization | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071554 | cell wall organization or biogenesis | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0009987 | cellular process | No |
| GO:0071555 | cell wall organization | No |
| GO:0052689 | carboxylic ester hydrolase activity | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 2.04 | 0.43 | 3.65 |
| Initials | Initials knots | 3.25 | 1.30 | 5.20 |
| Pileal_Stipeal_center | Stage I stipe center | 0.82 | 0.14 | 1.49 |
| Pileal_Stipeal_shell | Stage I stipe shell | 0.67 | 0.08 | 1.26 |
| DIF_stipe_center | Stage II stipe center | 1.03 | 0.26 | 1.80 |
| DIF_stipe_shell | Stage II stipe shell | 0.99 | 0.24 | 1.74 |
| DIF_stipe_skin | Stage II stipe skin | 0.98 | 0.22 | 1.75 |
| DIF_cap_skin | Stage II cap skin | 0.37 | 0.00 | 0.74 |
| DIF_cap_tissue | Stage II cap tissue | 0.38 | 0.00 | 0.76 |
| DIF_gill_tissue | Stage II gill tissue | 0.76 | 0.14 | 1.39 |
| YFB_stipe_center | Young fruiting body stipe center | 1.40 | 0.40 | 2.41 |
| YFB_stipe_shell | Young fruiting body stipe shell | 1.91 | 0.66 | 3.17 |
| YFB_stipe_skin | Young fruiting body stipe skin | 1.84 | 0.59 | 3.09 |
| YFB_cap_skin | Young fruiting body cap skin | 0.44 | 0.03 | 0.85 |
| YFB_cap_tissue | Young fruiting body cap tissue | 0.67 | 0.12 | 1.22 |
| YFB_gill_tissue | Young fruiting body gill tissue | 0.43 | 0.02 | 0.83 |
| YFB_veil | Young fruiting body veil | 0.52 | 0.05 | 1.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.074840 | no |
| Casing | YFB_stipe_center | 0.597707 | no |
| Casing | YFB_stipe_shell | 0.947789 | no |
| Casing | YFB_stipe_skin | 0.914359 | no |
| Casing | YFB_cap_skin | 0.013485 | yes |
| Casing | YFB_cap_tissue | 0.049882 | yes |
| Casing | YFB_gill_tissue | 0.010728 | yes |
| Casing | YFB_veil | 0.021583 | yes |
| Casing | Initials | 0.419635 | no |
| Casing | Pileal_Stipeal_center | 0.114271 | no |
| Casing | Pileal_Stipeal_shell | 0.056367 | no |
| Casing | DIF_stipe_center | 0.234962 | no |
| Casing | DIF_stipe_shell | 0.200323 | no |
| Casing | DIF_stipe_skin | 0.230239 | no |
| Casing | DIF_cap_skin | 0.011041 | yes |
| Casing | DIF_cap_tissue | 0.012274 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.320364 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.075908 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.096785 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.474406 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.896523 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.432917 | no |
| DIF_gill_tissue | YFB_veil | 0.647266 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.649821 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.709691 | no |
| YFB_stipe_center | YFB_cap_skin | 0.057945 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.209483 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.045701 | yes |
| YFB_stipe_center | YFB_veil | 0.085387 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.966416 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.016949 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.047584 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.012274 | yes |
| YFB_stipe_shell | YFB_veil | 0.023153 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.018624 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.060497 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.014668 | yes |
| YFB_stipe_skin | YFB_veil | 0.026461 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.636324 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.984727 | no |
| YFB_cap_skin | YFB_veil | 0.883358 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.594344 | no |
| YFB_cap_tissue | YFB_veil | 0.803530 | no |
| YFB_gill_tissue | YFB_veil | 0.859610 | no |
| Initials | DIF_gill_tissue | 0.003365 | yes |
| Initials | YFB_stipe_center | 0.070137 | no |
| Initials | YFB_stipe_shell | 0.273153 | no |
| Initials | YFB_stipe_skin | 0.249513 | no |
| Initials | YFB_cap_skin | 0.001625 | yes |
| Initials | YFB_cap_tissue | 0.002951 | yes |
| Initials | YFB_gill_tissue | 0.002084 | yes |
| Initials | YFB_veil | 0.001625 | yes |
| Initials | Pileal_Stipeal_center | 0.013186 | yes |
| Initials | Pileal_Stipeal_shell | 0.003365 | yes |
| Initials | DIF_stipe_center | 0.012880 | yes |
| Initials | DIF_stipe_shell | 0.011350 | yes |
| Initials | DIF_stipe_skin | 0.014956 | yes |
| Initials | DIF_cap_skin | 0.003365 | yes |
| Initials | DIF_cap_tissue | 0.001625 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.953972 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.397375 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.112257 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.138143 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.412526 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.837780 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.370189 | no |
| Pileal_Stipeal_center | YFB_veil | 0.578613 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.842540 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.788509 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.835097 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.845344 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.286806 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.305970 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.899673 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.221143 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.058732 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.068830 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.639246 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.990145 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.596348 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.806466 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.557090 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.608244 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.633120 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.479466 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.509284 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.708106 | no |
| DIF_stipe_center | YFB_stipe_center | 0.673624 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.244165 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.301454 | no |
| DIF_stipe_center | YFB_cap_skin | 0.197709 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.548385 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.166190 | no |
| DIF_stipe_center | YFB_veil | 0.296701 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.967492 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.966102 | no |
| DIF_stipe_center | DIF_cap_skin | 0.133711 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.140702 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.760582 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.621575 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.204814 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.257070 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.216074 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.602887 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.185817 | no |
| DIF_stipe_shell | YFB_veil | 0.335141 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.992528 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.145518 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.155703 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.775193 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.632529 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.227594 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.278478 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.240509 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.624557 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.205305 | no |
| DIF_stipe_skin | YFB_veil | 0.361373 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.161568 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.169322 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.330910 | no |
| DIF_cap_skin | YFB_stipe_center | 0.046952 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.017507 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.018624 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.887593 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.470028 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.911177 | no |
| DIF_cap_skin | YFB_veil | 0.736474 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.984621 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.365801 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.052547 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.015819 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.019442 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.910467 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.499611 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.933668 | no |
| DIF_cap_tissue | YFB_veil | 0.762913 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|099390 MISFIFLVTLGIWRSAQLVVGLSPHFFSCQIQKPVGISPLSGCPDGTIFVSQNTNDEFAHFHKIQDAILSLTSNS EAIILIGAGEYHETLNVTRQSPLTLLGQLPAQTKISPLLPFYSEPPFPDNLVQVWDDRFVQTGMDDAESTVLVVA PSFDASLIGAGPTGAPLQPLFGNTDFKTYNIDFQNRAANFAISQALVTDISYANASFYGCSFASFQDTWYTGRNG STYVVDSVIYGQTDYLFGFGTAWFEHVVLANRACGGGIVAWKGTNLTDAPENRYGAYISNSQIIRSPDANETTVT DQRCFLGRPWNDLATTVYLNTVMDNSIRPTGWTPFNSDRPVIMNTTFYAEFNSTGPGGDTSQRIPQEHLLSAREA RNFTIEMAVLIEKNNYARNLHMDDIG* |
| Coding | >AgabiH97|099390 ATGATCAGCTTCATCTTCTTAGTCACTCTTGGTATCTGGCGTTCAGCTCAGCTGGTCGTTGGCCTGTCACCTCAT TTTTTTTCTTGTCAAATACAAAAGCCGGTCGGAATATCACCATTGTCTGGTTGCCCCGATGGCACGATCTTTGTC AGTCAGAATACGAATGACGAGTTCGCACACTTCCACAAAATTCAGGATGCGATATTATCTCTGACTTCCAATTCC GAGGCGATAATCCTCATAGGGGCAGGGGAATACCATGAAACTCTCAATGTCACTAGACAAAGCCCATTAACGCTC CTCGGCCAGTTACCAGCCCAGACAAAAATCTCACCATTATTACCATTCTATTCCGAACCACCTTTCCCAGACAAC CTTGTTCAAGTCTGGGATGACAGGTTCGTTCAGACTGGAATGGATGATGCCGAATCTACAGTACTCGTTGTTGCG CCGTCTTTCGACGCCTCTCTAATAGGCGCAGGCCCAACGGGTGCTCCTCTACAGCCTCTCTTCGGAAACACAGAT TTCAAAACTTACAACATCGATTTTCAGAACCGCGCGGCCAATTTTGCAATATCGCAGGCATTGGTAACGGATATT TCCTACGCAAATGCTTCGTTCTATGGCTGTTCCTTTGCGAGTTTCCAGGATACATGGTATACAGGCAGGAATGGA AGCACGTACGTAGTTGACAGTGTCATTTACGGGCAAACAGACTACCTCTTTGGTTTCGGAACTGCGTGGTTCGAG CATGTCGTCCTCGCTAACAGAGCATGTGGCGGCGGTATTGTTGCCTGGAAAGGAACGAATCTGACGGATGCTCCG GAAAATCGTTATGGTGCCTATATCTCAAACTCACAGATCATCAGGTCTCCCGATGCGAATGAAACCACTGTCACA GATCAAAGATGCTTTTTGGGTCGACCTTGGAATGATTTGGCCACGACTGTATATTTGAATACAGTCATGGATAAT AGCATTCGACCAACCGGGTGGACTCCGTTTAACAGTGATAGGCCTGTCATCATGAACACGACATTTTACGCTGAA TTTAATTCAACGGGGCCAGGAGGAGACACATCACAACGGATTCCACAGGAACATCTCCTTTCTGCGCGGGAGGCC AGAAATTTCACCATCGAAATGGCTGTTCTGATTGAAAAGAACAATTATGCAAGAAATTTGCACATGGATGACATC GGATGA |
| Transcript | >AgabiH97|099390 ATGATCAGCTTCATCTTCTTAGTCACTCTTGGTATCTGGCGTTCAGCTCAGCTGGTCGTTGGCCTGTCACCTCAT TTTTTTTCTTGTCAAATACAAAAGCCGGTCGGAATATCACCATTGTCTGGTTGCCCCGATGGCACGATCTTTGTC AGTCAGAATACGAATGACGAGTTCGCACACTTCCACAAAATTCAGGATGCGATATTATCTCTGACTTCCAATTCC GAGGCGATAATCCTCATAGGGGCAGGGGAATACCATGAAACTCTCAATGTCACTAGACAAAGCCCATTAACGCTC CTCGGCCAGTTACCAGCCCAGACAAAAATCTCACCATTATTACCATTCTATTCCGAACCACCTTTCCCAGACAAC CTTGTTCAAGTCTGGGATGACAGGTTCGTTCAGACTGGAATGGATGATGCCGAATCTACAGTACTCGTTGTTGCG CCGTCTTTCGACGCCTCTCTAATAGGCGCAGGCCCAACGGGTGCTCCTCTACAGCCTCTCTTCGGAAACACAGAT TTCAAAACTTACAACATCGATTTTCAGAACCGCGCGGCCAATTTTGCAATATCGCAGGCATTGGTAACGGATATT TCCTACGCAAATGCTTCGTTCTATGGCTGTTCCTTTGCGAGTTTCCAGGATACATGGTATACAGGCAGGAATGGA AGCACGTACGTAGTTGACAGTGTCATTTACGGGCAAACAGACTACCTCTTTGGTTTCGGAACTGCGTGGTTCGAG CATGTCGTCCTCGCTAACAGAGCATGTGGCGGCGGTATTGTTGCCTGGAAAGGAACGAATCTGACGGATGCTCCG GAAAATCGTTATGGTGCCTATATCTCAAACTCACAGATCATCAGGTCTCCCGATGCGAATGAAACCACTGTCACA GATCAAAGATGCTTTTTGGGTCGACCTTGGAATGATTTGGCCACGACTGTATATTTGAATACAGTCATGGATAAT AGCATTCGACCAACCGGGTGGACTCCGTTTAACAGTGATAGGCCTGTCATCATGAACACGACATTTTACGCTGAA TTTAATTCAACGGGGCCAGGAGGAGACACATCACAACGGATTCCACAGGAACATCTCCTTTCTGCGCGGGAGGCC AGAAATTTCACCATCGAAATGGCTGTTCTGATTGAAAAGAACAATTATGCAAGAAATTTGCACATGGATGACATC GGATGA |
| Gene | >AgabiH97|099390 ATGATCAGCTTCATCTTCTTAGTCACTCTTGGTATCTGGCGTTCAGCTCAGCTGGTCGTTGGCCTGTCACCTCAT TTTTTTTCTTGTCAAATACAAAAGCCGGTCGGAATATCACCATTGTCTGGTTGCCCCGATGGCACGATCTTTGTC AGTCAGAATACGAATGACGAGTTCGCACACTTCCACAAAATTCAGGATGCGATATTATCTCTGTATGGCCTTTGA ATTTGACAGGCACAGGACTGGAATAACACCACCAAAACGTTATTTTTTTAGGACTTCCAATTCCGAGGCGATAAT CCTCATAGGGGCAGGGGAATACCATGAAACTCTCAATGTCACTAGACAAAGCCCATTAACGCTCCTCGGCCAGTT ACCAGCCCAGACAAAAATCTCACCATTATTACCATTCTATTCCGAACCACCTTTCCCAGACAACCTTGTTCAAGT CTGGGATGACAGGTTCGTTCAGACTGGAATGGATGATGCCGAATCTACAGTACTCGTTGTTGCGCCGTCTTTCGA CGCCTCTCTAATAGGCGCAGGCCCAACGGGTGCTCCTCTACAGCCTCTCTTCGGAAACACAGATTTCAAAACTTA CAACATCGATTTTCAGAACCGCGCGGTGAGTGTATATGGAACCTCAGACAGGTTGACATGATCCAAGATCGGGAA TTGGATTATCGTAGGCCAATTTTGCAATATCGCAGGCATTGGTAACGGATATTTCCTACGCAAATGCTTCGTTCT ATGGCTGTTCCTTTGCGAGTTTCCAGGATACATGGTATACAGGCAGGAATGGAAGCACGTACGTAGTTGACAGTG TCATTTACGGGCAAACAGACTGTGAGTCAATTTGGATATATAGTCCTCTATTTCCGAACCCATACGAAATCTAGA CCTCTTTGGTTTCGGAACTGCGTAAGATATGAGCATGTATGATACATGACGGTGACATGATCTCATCATTAAAAC AGGTGGTTCGAGCATGTCGTCCTCGCTAACAGAGCATGTGGCGGCGGTATTGTTGCCTGGAAAGGAACGAATCTG ACGGATGCTCCGGAAAATCGTTATGGTGCCTATATCTCAAACTCACAGATCATCAGGGTACGAGATTTACGATCG TTCGAAACAGAAGCCAAGCTGAAAACAATAATAATAACAATAGTCTCCCGATGCGAATGAAACCACTGTCACAGA TCAAAGATGCTTTTTGGGTTTGTTTTGCCAATAAAGTCAACCCCAATGTTCTTTGACAGGAGCTGTAACCATAGG TCGACCTTGGAATGATTTGGCCACGACTGTATATTTGAATACAGTCATGGATAATAGCATTCGACCAACCGGGTG GACTCCGTTTAACAGTGATAGGTTCGCAGCTGATATCGACCAAGTTTGATTGCTGATTAGCGACCTAAGGCCTGT CATCATGAACACGACATTTTACGCTGAATTTAATTCAACGGGTAGGTCAAGCGGTGGAGTATCCAGTTCCCGTGT TGATTAATCTAAAAAAGGGCCAGGAGGAGACACATCACAACGGATTCCACAGGAACATCTCCTTTCTGCGCGGGA GGCCAGAAATTTCACCATCGAAATGGTATTCTTGGAACGGCCCCACTGGATTGATTTTGATTATTTGTTTTGAAA AGGCTGTTCTGATTGAAAAGAACAATTATGCAAGAAATTTGCACATGGATGACATCGGATGA |