Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|099320
Gene name
Location	scaffold_7:601268..602628
Strand	-
Gene length (bp)	1360
Transcript length (bp)	1146
Coding sequence length (bp)	1146
Protein length (aa)	382

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01328	Peroxidase_2	Peroxidase, family 2	2.3E-48	67	280

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|B9W4V6|APO1_AGRAE	Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1	12	374	7.0E-144
sp|B9W4V8|APO1_COPRA	Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2	52	279	2.0E-85
sp|Q00668|STCC_EMENI	Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2	69	274	2.0E-14

GO

GO Term	Description	Terminal node
GO:0004601	peroxidase activity	Yes
GO:0003674	molecular_function	No
GO:0016491	oxidoreductase activity	No
GO:0016209	antioxidant activity	No
GO:0003824	catalytic activity	No
GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	21.79	11.53	32.04
Initials	Initials knots	8.07	3.74	12.40
Pileal_Stipeal_center	Stage I stipe center	11.36	4.71	18.02
Pileal_Stipeal_shell	Stage I stipe shell	4.47	1.88	7.06
DIF_stipe_center	Stage II stipe center	2.95	0.92	4.99
DIF_stipe_shell	Stage II stipe shell	1.13	0.29	1.97
DIF_stipe_skin	Stage II stipe skin	2.03	0.65	3.41
DIF_cap_skin	Stage II cap skin	1.12	0.29	1.95
DIF_cap_tissue	Stage II cap tissue	4.89	2.06	7.72
DIF_gill_tissue	Stage II gill tissue	8.54	3.80	13.28
YFB_stipe_center	Young fruiting body stipe center	0.99	0.24	1.75
YFB_stipe_shell	Young fruiting body stipe shell	0.67	0.11	1.24
YFB_stipe_skin	Young fruiting body stipe skin	2.19	0.66	3.73
YFB_cap_skin	Young fruiting body cap skin	0.95	0.22	1.69
YFB_cap_tissue	Young fruiting body cap tissue	0.89	0.18	1.59
YFB_gill_tissue	Young fruiting body gill tissue	2.94	1.00	4.88
YFB_veil	Young fruiting body veil	6.47	2.48	10.47

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.007092	yes
Casing	YFB_stipe_center	0.000613	yes
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.000613	yes
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.001140	yes
Casing	Pileal_Stipeal_center	0.064333	no
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.000613	yes
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.000613	yes
DIF_gill_tissue	YFB_stipe_shell	0.000613	yes
DIF_gill_tissue	YFB_stipe_skin	0.002084	yes
DIF_gill_tissue	YFB_cap_skin	0.000613	yes
DIF_gill_tissue	YFB_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_gill_tissue	0.008457	yes
DIF_gill_tissue	YFB_veil	0.608653	no
YFB_stipe_center	YFB_stipe_shell	0.602498	no
YFB_stipe_center	YFB_stipe_skin	0.128378	no
YFB_stipe_center	YFB_cap_skin	0.971365	no
YFB_stipe_center	YFB_cap_tissue	0.911464	no
YFB_stipe_center	YFB_gill_tissue	0.020523	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.025711	yes
YFB_stipe_shell	YFB_cap_skin	0.659672	no
YFB_stipe_shell	YFB_cap_tissue	0.758684	no
YFB_stipe_shell	YFB_gill_tissue	0.006387	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.114428	no
YFB_stipe_skin	YFB_cap_tissue	0.100411	no
YFB_stipe_skin	YFB_gill_tissue	0.664067	no
YFB_stipe_skin	YFB_veil	0.011659	yes
YFB_cap_skin	YFB_cap_tissue	0.943459	no
YFB_cap_skin	YFB_gill_tissue	0.019715	yes
YFB_cap_skin	YFB_veil	0.000613	yes
YFB_cap_tissue	YFB_gill_tissue	0.021583	yes
YFB_cap_tissue	YFB_veil	0.000613	yes
YFB_gill_tissue	YFB_veil	0.068640	no
Initials	DIF_gill_tissue	0.937689	no
Initials	YFB_stipe_center	0.000613	yes
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.003365	yes
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.000613	yes
Initials	YFB_gill_tissue	0.012274	yes
Initials	YFB_veil	0.700690	no
Initials	Pileal_Stipeal_center	0.468413	no
Initials	Pileal_Stipeal_shell	0.136602	no
Initials	DIF_stipe_center	0.014374	yes
Initials	DIF_stipe_shell	0.000613	yes
Initials	DIF_stipe_skin	0.000613	yes
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.228924	no
Pileal_Stipeal_center	DIF_gill_tissue	0.584174	no
Pileal_Stipeal_center	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.001140	yes
Pileal_Stipeal_center	YFB_cap_skin	0.000613	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_veil	0.184709	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.010728	yes
Pileal_Stipeal_center	DIF_stipe_center	0.001140	yes
Pileal_Stipeal_center	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_skin	0.000613	yes
Pileal_Stipeal_center	DIF_cap_skin	0.000613	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.022111	yes
Pileal_Stipeal_shell	DIF_gill_tissue	0.107930	no
Pileal_Stipeal_shell	YFB_stipe_center	0.001140	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.118699	no
Pileal_Stipeal_shell	YFB_cap_skin	0.002525	yes
Pileal_Stipeal_shell	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.405428	no
Pileal_Stipeal_shell	YFB_veil	0.453704	no
Pileal_Stipeal_shell	DIF_stipe_center	0.437374	no
Pileal_Stipeal_shell	DIF_stipe_shell	0.002084	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.069763	no
Pileal_Stipeal_shell	DIF_cap_skin	0.002525	yes
Pileal_Stipeal_shell	DIF_cap_tissue	0.905419	no
DIF_stipe_center	DIF_gill_tissue	0.014374	yes
DIF_stipe_center	YFB_stipe_center	0.027205	yes
DIF_stipe_center	YFB_stipe_shell	0.004928	yes
DIF_stipe_center	YFB_stipe_skin	0.670235	no
DIF_stipe_center	YFB_cap_skin	0.022892	yes
DIF_stipe_center	YFB_cap_tissue	0.017226	yes
DIF_stipe_center	YFB_gill_tissue	0.995517	no
DIF_stipe_center	YFB_veil	0.085045	no
DIF_stipe_center	DIF_stipe_shell	0.054982	no
DIF_stipe_center	DIF_stipe_skin	0.550636	no
DIF_stipe_center	DIF_cap_skin	0.049882	yes
DIF_stipe_center	DIF_cap_tissue	0.310583	no
DIF_stipe_shell	DIF_gill_tissue	0.000613	yes
DIF_stipe_shell	YFB_stipe_center	0.892457	no
DIF_stipe_shell	YFB_stipe_shell	0.438354	no
DIF_stipe_shell	YFB_stipe_skin	0.224483	no
DIF_stipe_shell	YFB_cap_skin	0.856790	no
DIF_stipe_shell	YFB_cap_tissue	0.777777	no
DIF_stipe_shell	YFB_gill_tissue	0.048422	yes
DIF_stipe_shell	YFB_veil	0.000613	yes
DIF_stipe_shell	DIF_stipe_skin	0.294650	no
DIF_stipe_shell	DIF_cap_skin	0.993555	no
DIF_stipe_shell	DIF_cap_tissue	0.001140	yes
DIF_stipe_skin	DIF_gill_tissue	0.000613	yes
DIF_stipe_skin	YFB_stipe_center	0.172307	no
DIF_stipe_skin	YFB_stipe_shell	0.033211	yes
DIF_stipe_skin	YFB_stipe_skin	0.933992	no
DIF_stipe_skin	YFB_cap_skin	0.154913	no
DIF_stipe_skin	YFB_cap_tissue	0.130818	no
DIF_stipe_skin	YFB_gill_tissue	0.538051	no
DIF_stipe_skin	YFB_veil	0.002951	yes
DIF_stipe_skin	DIF_cap_skin	0.283077	no
DIF_stipe_skin	DIF_cap_tissue	0.039390	yes
DIF_cap_skin	DIF_gill_tissue	0.000613	yes
DIF_cap_skin	YFB_stipe_center	0.897656	no
DIF_cap_skin	YFB_stipe_shell	0.443099	no
DIF_cap_skin	YFB_stipe_skin	0.214476	no
DIF_cap_skin	YFB_cap_skin	0.861206	no
DIF_cap_skin	YFB_cap_tissue	0.785285	no
DIF_cap_skin	YFB_gill_tissue	0.044418	yes
DIF_cap_skin	YFB_veil	0.000613	yes
DIF_cap_skin	DIF_cap_tissue	0.000613	yes
DIF_cap_tissue	DIF_gill_tissue	0.177188	no
DIF_cap_tissue	YFB_stipe_center	0.000613	yes
DIF_cap_tissue	YFB_stipe_shell	0.000613	yes
DIF_cap_tissue	YFB_stipe_skin	0.075734	no
DIF_cap_tissue	YFB_cap_skin	0.001140	yes
DIF_cap_tissue	YFB_cap_tissue	0.000613	yes
DIF_cap_tissue	YFB_gill_tissue	0.282501	no
DIF_cap_tissue	YFB_veil	0.608198	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|099320 MARFASFVVLAISLASSVAAVPAHIPLAGMPVAKRDALIETLRAVKPEAPPPPLAFNGTKLVNDAAHPWKPLRRG DQRGPCPGLNTLASHGYLPRNGIITPAQLLNAVQEGYNAETILARRFTYAAILADGNLVTNLLSIGQKSPLTGPD PDAPATIGGLVNHGPFEGDASMTRNDAFFGDNFSFNETLWEELVDTANKFGAGKYNYTVAGELRYRRIQDSIANN PTFEFRNNRYFAAYTETLLTANLFLDGRSTDGQLDLKDARSFFEDMRMPDDFHRAPRPLAAEGTDYIVNLHPFSP GYNKDGVNSFTLDPESASWTNDPMGCKLYKWYVEQVVVPAYPEPKGVLKRNLNLNLQYYYDTFAGCEQLFPYGKP EKDDDN*
Coding	>AgabiH97|099320 ATGGCTCGCTTCGCATCCTTTGTAGTTCTTGCTATTTCTCTGGCCTCTTCGGTTGCCGCTGTACCAGCTCATATT CCGCTGGCTGGTATGCCAGTCGCTAAACGCGACGCACTCATCGAGACTCTGCGAGCCGTAAAGCCAGAGGCTCCC CCTCCCCCCTTGGCCTTCAACGGGACTAAACTCGTCAATGATGCCGCCCATCCTTGGAAGCCGCTCAGGAGAGGC GACCAGCGAGGACCTTGTCCCGGTTTGAACACACTCGCTTCTCATGGTTATCTTCCTCGTAATGGTATTATTACA CCGGCTCAACTCCTCAATGCTGTCCAAGAAGGATACAATGCGGAGACTATCCTCGCAAGAAGATTTACCTATGCT GCCATCCTTGCCGATGGAAACCTTGTCACCAATCTGCTCAGCATTGGCCAAAAGTCGCCATTGACTGGTCCCGAT CCGGATGCACCAGCAACCATTGGTGGCTTGGTTAACCATGGACCATTCGAAGGCGACGCCAGCATGACCCGAAAT GACGCATTCTTCGGTGACAATTTCAGCTTCAACGAGACTCTTTGGGAGGAGCTCGTCGATACTGCCAATAAATTT GGAGCCGGAAAGTACAACTACACCGTCGCTGGTGAACTCAGATACAGGCGTATTCAAGATTCCATCGCGAACAAC CCTACATTCGAATTCAGGAACAACCGCTACTTCGCTGCATACACCGAAACTCTCCTCACAGCCAACTTGTTCTTG GATGGACGCTCTACGGATGGTCAATTAGATCTAAAGGATGCACGCAGCTTCTTCGAAGACATGCGCATGCCTGAT GACTTCCACCGAGCACCCAGGCCATTGGCTGCCGAGGGAACGGATTATATCGTTAACCTTCACCCATTCTCTCCG GGTTATAACAAAGACGGAGTCAACAGCTTCACATTGGACCCAGAATCTGCCAGCTGGACCAATGACCCCATGGGC TGCAAGCTCTACAAGTGGTATGTTGAGCAGGTTGTCGTTCCCGCGTATCCCGAGCCAAAGGGAGTCTTGAAGAGG AACTTGAACCTCAACTTGCAATATTACTACGATACTTTCGCTGGATGCGAGCAGCTCTTCCCTTACGGAAAGCCG GAGAAAGATGATGACAACTAG
Transcript	>AgabiH97|099320 ATGGCTCGCTTCGCATCCTTTGTAGTTCTTGCTATTTCTCTGGCCTCTTCGGTTGCCGCTGTACCAGCTCATATT CCGCTGGCTGGTATGCCAGTCGCTAAACGCGACGCACTCATCGAGACTCTGCGAGCCGTAAAGCCAGAGGCTCCC CCTCCCCCCTTGGCCTTCAACGGGACTAAACTCGTCAATGATGCCGCCCATCCTTGGAAGCCGCTCAGGAGAGGC GACCAGCGAGGACCTTGTCCCGGTTTGAACACACTCGCTTCTCATGGTTATCTTCCTCGTAATGGTATTATTACA CCGGCTCAACTCCTCAATGCTGTCCAAGAAGGATACAATGCGGAGACTATCCTCGCAAGAAGATTTACCTATGCT GCCATCCTTGCCGATGGAAACCTTGTCACCAATCTGCTCAGCATTGGCCAAAAGTCGCCATTGACTGGTCCCGAT CCGGATGCACCAGCAACCATTGGTGGCTTGGTTAACCATGGACCATTCGAAGGCGACGCCAGCATGACCCGAAAT GACGCATTCTTCGGTGACAATTTCAGCTTCAACGAGACTCTTTGGGAGGAGCTCGTCGATACTGCCAATAAATTT GGAGCCGGAAAGTACAACTACACCGTCGCTGGTGAACTCAGATACAGGCGTATTCAAGATTCCATCGCGAACAAC CCTACATTCGAATTCAGGAACAACCGCTACTTCGCTGCATACACCGAAACTCTCCTCACAGCCAACTTGTTCTTG GATGGACGCTCTACGGATGGTCAATTAGATCTAAAGGATGCACGCAGCTTCTTCGAAGACATGCGCATGCCTGAT GACTTCCACCGAGCACCCAGGCCATTGGCTGCCGAGGGAACGGATTATATCGTTAACCTTCACCCATTCTCTCCG GGTTATAACAAAGACGGAGTCAACAGCTTCACATTGGACCCAGAATCTGCCAGCTGGACCAATGACCCCATGGGC TGCAAGCTCTACAAGTGGTATGTTGAGCAGGTTGTCGTTCCCGCGTATCCCGAGCCAAAGGGAGTCTTGAAGAGG AACTTGAACCTCAACTTGCAATATTACTACGATACTTTCGCTGGATGCGAGCAGCTCTTCCCTTACGGAAAGCCG GAGAAAGATGATGACAACTAG
Gene	>AgabiH97|099320 ATGGCTCGCTTCGCATCCTTTGTAGTTCTTGCTATTTCTCTGGCCTCTTCGGTTGCCGCTGTACCAGCTCATATT CCGCTGGCTGGTATGCCAGTCGCTAAACGCGACGCACTCATCGAGACTCTGCGAGCCGTAAAGCCAGAGGCTCCC CCTCCCCCCTTGGCCTTCAACGGGACTAAACTCGTCAATGATGCCGCCCATCCTTGGAAGCCGCTCAGGAGAGGC GACCAGCGAGGACCTTGTCCCGGTTTGAACACACTCGCTTCTCATGGTGTAAGTCACCTTAAATATACATATGGT CCTGATCTTAACGTCTTCCACAGTATCTTCCTCGTAATGGTATTATTACACCGGCTCAACTCCTCAATGCTGTCC AAGAAGGTGAGGAAGATTGTTCTGCGGTTTATCATTTGCCTCACCTCAACACCTTATTACAGGATACAATGCGGA GACTATCCTCGCAAGAAGATTTACCTATGCTGCCATCCTTGCCGATGGAAACCTTGTCACCAATCTGCTCAGCAT TGGCCAAAAGTCGCCATTGACTGGTCCCGATCCGGATGCACCAGCAACCATTGGTGGCTTGGTTAACCATGGACC ATTCGAAGGCGACGCCAGCATGACCCGAAGTATGTTCTCGTGAAATGAATACTTCAACTGGAAAGCTAATGCCAA TGTTCAGATGACGCATTCTTCGGTGACAATTTCAGCTTCAACGAGACTCTTTGGGAGGAGGTAAAGTCTTTAACC AAAGCTGTAAAAGAATATCAATGACTTACTGCGCCCATAGCTCGTCGATACTGCCAATAAATTTGGAGCCGGAAA GTACAACTACACCGTCGCTGGTGAACTCAGATACAGGCGTATTCAAGATTCCATCGCGAACAACCCTACATTCGA ATTCAGGAACAACCGCTACTTCGCTGCATACACCGAAACTCTCCTCACAGCCAACTTGTTCTTGGATGGACGCTC TACGGATGGTCAATTAGATCTAAAGGATGCACGCAGCTTCTTCGAAGACATGCGCATGCCTGATGACTTCCACCG AGCACCCAGGCCATTGGCTGCCGAGGGAACGGATTATATCGTTAACCTTCACCCATTCTCTCCGGGTTATAACAA AGACGGAGTCAACAGCTTCACATTGGACCCAGAATCTGCCAGCTGGACCAATGACCCCATGGGCTGCAAGCTCTA CAAGTGGTATGTTGAGCAGGTTGTCGTTCCCGCGTATCCCGAGCCAAAGGGAGTCTTGAAGAGGAACTTGAACCT CAACTTGCAATATTACTACGATACTTTCGCTGGATGCGAGCAGCTCTTCCCTTACGGAAAGCCGGAGAAAGATGA TGACAACTAG