Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|097920
Gene name
Location	scaffold_7:188886..191165
Strand	-
Gene length (bp)	2279
Transcript length (bp)	1815
Coding sequence length (bp)	1815
Protein length (aa)	605

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02656	DUF202	Domain of unknown function (DUF202)	1.5E-15	487	562
PF14559	TPR_19	Tetratricopeptide repeat	1.1E-06	47	111
PF13181	TPR_8	Tetratricopeptide repeat	5.5E-02	69	100

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q28IV3\|RPAP3_XENTR	RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1	2	156	5.0E-13
sp\|Q84K11\|PPP5_SOLLC	Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1	28	161	2.0E-10
sp\|Q6NU95\|RPAP3_XENLA	RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1	14	150	2.0E-10
sp\|Q9H6T3\|RPAP3_HUMAN	RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2	8	148	3.0E-10
sp\|Q68FQ7\|RPAP3_RAT	RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=1 SV=1	40	148	8.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q28IV3\|RPAP3_XENTR	RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1	2	156	5.0E-13
sp\|Q84K11\|PPP5_SOLLC	Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1	28	161	2.0E-10
sp\|Q6NU95\|RPAP3_XENLA	RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1	14	150	2.0E-10
sp\|Q9H6T3\|RPAP3_HUMAN	RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2	8	148	3.0E-10
sp\|Q68FQ7\|RPAP3_RAT	RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=1 SV=1	40	148	8.0E-10
sp\|Q9D706\|RPAP3_MOUSE	RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1	40	148	1.0E-09
sp\|Q5ZKQ3\|RPAP3_CHICK	RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1	40	148	7.0E-09
sp\|Q84XU2\|PPP5_ARATH	Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1	32	155	1.0E-07
sp\|Q9LNB6\|HSOP1_ARATH	Hsp70-Hsp90 organizing protein 1 OS=Arabidopsis thaliana GN=HOP1 PE=2 SV=1	40	141	6.0E-07
sp\|O43049\|PPT1_SCHPO	Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppt1 PE=3 SV=2	46	146	1.0E-06
sp\|A4K2V0\|TOM34_PONAB	Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1	31	149	2.0E-06
sp\|Q3KRD5\|TOM34_RAT	Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=1 SV=1	31	132	2.0E-06
sp\|Q15785\|TOM34_HUMAN	Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2	31	148	3.0E-06
sp\|Q3ZBR5\|TTC1_BOVIN	Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1	31	170	3.0E-06
sp\|Q95LY5\|TTC12_MACFA	Tetratricopeptide repeat protein 12 (Fragment) OS=Macaca fascicularis GN=TTC12 PE=2 SV=1	19	161	5.0E-06
sp\|P30416\|FKBP4_MOUSE	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5	10	152	5.0E-06
sp\|Q5ZKQ3\|RPAP3_CHICK	RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1	26	193	7.0E-06
sp\|P53042\|PPP5_RAT	Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=1 SV=1	27	173	9.0E-06
sp\|Q99614\|TTC1_HUMAN	Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1	24	170	1.0E-05

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GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0005488	binding	No
GO:0003674	molecular_function	No

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Golgi apparatus	Transmembrane domain	0.1065	0.2241	0.0227	0.2682	0.1878	0.0204	0.3574	0.4538	0.491	0.0118

SignalP

(None)

Transmembrane Domains

Domain #	Start	End	Length
1	380	402	22
2	504	526	22
3	541	563	22
4	576	598	22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID	1
Orthogroup	883
Change Orthofinder run

Species	Protein ID
Agaricus bisporus var bisporus H39	AgabiH39\|097920
Agaricus bisporus var bisporus H97	AgabiH97\|097920 (this protein)
Agaricus bisporus var bisporus H97	AgabiH97\|102080
Rhodonia placenta FPRL280	RhoplFPRL280\|62_32

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|097920 MSTTELTPEEARERLVLKAKERKERIEANHEKASGIIQSGDESFNKGNFTEALEFYSRAVQLWNTNVHLLVKLAI AHVKCKQYKEAVTAATRALYMDPSNPDARFQRGLARLELHKAGLALIDLETVLEINPTYPGLTSALERVKKQLNS RKMKKKTRAKEIDEELMGPLLEEDGIEEADLSDSEESKMVGNGIPCRHYNKKPAGCREGLNCKWMHAPDETSVRD TTGRNVCIYHLLDSCRFGEKCFYSHDKEWLPPNGWWTDPYKIAVMEEIVDMARMKARIQQHNFQKSKRENRYAQR SRGRKNPHTAASSSSGVPAMMMMSMDAYDNDLDDFRMQHCGFSQGDVEELMCQGVKPWDDDAWDVLHALSSVKLR VRPTLTPQWLPLTHSLTTCLYTYLLFYDQVYLATSDRHYHSYKIHKVTQIHLRPRPTGPNCETVVQPVGSVRRRG SKLVKVESRPTKDRRIEKSREGYQIALILSNSGSVARDHLASERTFLAYVRTSLATASMGVALVQLFTIANSIGT VKTPQQQFLGKFATPLGATLILFGLIMLCLGCLRYFTIQIALTRGVFPAARLTITFIAAVGTAITGIIFGVLIKG REGS*
Coding	>AgabiH97\|097920 ATGTCAACAACAGAACTTACTCCCGAAGAAGCCCGAGAAAGACTGGTTTTGAAAGCCAAAGAACGCAAGGAAAGG ATCGAGGCAAACCACGAAAAAGCATCTGGCATCATCCAATCCGGTGATGAATCATTCAACAAGGGAAATTTCACC GAAGCGTTAGAATTTTATTCCCGAGCTGTTCAGTTATGGAATACAAATGTCCATCTGCTCGTCAAGCTCGCGATT GCACATGTCAAATGCAAACAATATAAAGAAGCAGTAACTGCTGCTACACGCGCACTATACATGGATCCTTCTAAT CCAGATGCCAGATTTCAACGTGGCCTCGCCCGTCTAGAGCTACATAAAGCCGGTCTCGCCCTAATCGATTTGGAA ACCGTTCTAGAGATTAACCCGACGTATCCTGGCTTAACTAGTGCTTTGGAGAGAGTCAAGAAGCAGCTCAACAGT CGAAAAATGAAAAAGAAAACGCGGGCTAAAGAGATAGATGAGGAATTGATGGGTCCGTTACTTGAGGAAGATGGT ATCGAAGAAGCTGATTTGAGTGATTCGGAGGAATCTAAAATGGTTGGGAATGGAATTCCATGCAGGCATTATAAT AAGAAGCCTGCAGGTTGCAGAGAGGGGTTGAATTGCAAGTGGATGCATGCACCTGATGAAACCAGTGTTCGAGAT ACAACCGGACGCAATGTTTGCATCTACCACTTACTTGACTCTTGCCGGTTTGGCGAAAAATGTTTCTATTCACAT GATAAGGAGTGGTTGCCGCCGAATGGGTGGTGGACCGATCCTTACAAGATCGCAGTAATGGAAGAGATTGTGGAT ATGGCGAGAATGAAAGCCAGGATTCAACAACACAATTTCCAGAAGAGTAAAAGGGAAAACCGGTACGCGCAGAGA TCGCGAGGAAGGAAGAATCCACACACTGCTGCTAGTAGTTCTAGTGGTGTGCCTGCAATGATGATGATGTCTATG GATGCTTATGACAACGACTTGGACGATTTCCGGATGCAACATTGTGGGTTTAGCCAGGGTGACGTGGAGGAACTC ATGTGCCAGGGAGTCAAGCCCTGGGACGATGATGCTTGGGATGTTTTGCACGCACTCTCCTCAGTTAAACTTCGA GTTCGGCCGACACTTACTCCGCAATGGCTACCTCTCACTCATTCACTGACCACTTGTCTTTATACTTACCTCCTT TTCTACGACCAAGTCTACCTCGCGACCTCAGACCGCCACTACCACAGTTACAAGATTCACAAAGTAACCCAGATA CACCTCCGCCCACGCCCGACCGGTCCGAATTGCGAGACAGTGGTACAACCAGTGGGGAGTGTACGCCGGAGAGGC AGTAAATTAGTGAAGGTGGAGTCCAGACCGACGAAGGACAGGCGAATCGAGAAATCGAGGGAGGGATATCAAATT GCTTTGATTCTCAGTAATTCGGGAAGCGTCGCGAGGGACCATTTGGCTTCGGAGAGAACTTTTCTGGCGTATGTG AGGACTAGTCTCGCTACGGCGTCTATGGGTGTAGCTTTGGTCCAGCTGTTCACGATTGCGAATAGTATTGGGACA GTGAAAACACCTCAACAACAGTTTCTGGGAAAGTTCGCGACTCCGCTCGGAGCCACTTTGATTCTATTTGGGCTA ATTATGCTCTGCCTTGGCTGCTTGCGGTATTTCACCATTCAGATAGCTTTGACTCGAGGTGTATTCCCTGCAGCA CGGCTGACCATTACATTTATTGCCGCGGTAGGGACGGCAATAACGGGGATTATCTTTGGCGTCCTGATCAAGGGT CGAGAAGGGTCATAG
Transcript	>AgabiH97\|097920 ATGTCAACAACAGAACTTACTCCCGAAGAAGCCCGAGAAAGACTGGTTTTGAAAGCCAAAGAACGCAAGGAAAGG ATCGAGGCAAACCACGAAAAAGCATCTGGCATCATCCAATCCGGTGATGAATCATTCAACAAGGGAAATTTCACC GAAGCGTTAGAATTTTATTCCCGAGCTGTTCAGTTATGGAATACAAATGTCCATCTGCTCGTCAAGCTCGCGATT GCACATGTCAAATGCAAACAATATAAAGAAGCAGTAACTGCTGCTACACGCGCACTATACATGGATCCTTCTAAT CCAGATGCCAGATTTCAACGTGGCCTCGCCCGTCTAGAGCTACATAAAGCCGGTCTCGCCCTAATCGATTTGGAA ACCGTTCTAGAGATTAACCCGACGTATCCTGGCTTAACTAGTGCTTTGGAGAGAGTCAAGAAGCAGCTCAACAGT CGAAAAATGAAAAAGAAAACGCGGGCTAAAGAGATAGATGAGGAATTGATGGGTCCGTTACTTGAGGAAGATGGT ATCGAAGAAGCTGATTTGAGTGATTCGGAGGAATCTAAAATGGTTGGGAATGGAATTCCATGCAGGCATTATAAT AAGAAGCCTGCAGGTTGCAGAGAGGGGTTGAATTGCAAGTGGATGCATGCACCTGATGAAACCAGTGTTCGAGAT ACAACCGGACGCAATGTTTGCATCTACCACTTACTTGACTCTTGCCGGTTTGGCGAAAAATGTTTCTATTCACAT GATAAGGAGTGGTTGCCGCCGAATGGGTGGTGGACCGATCCTTACAAGATCGCAGTAATGGAAGAGATTGTGGAT ATGGCGAGAATGAAAGCCAGGATTCAACAACACAATTTCCAGAAGAGTAAAAGGGAAAACCGGTACGCGCAGAGA TCGCGAGGAAGGAAGAATCCACACACTGCTGCTAGTAGTTCTAGTGGTGTGCCTGCAATGATGATGATGTCTATG GATGCTTATGACAACGACTTGGACGATTTCCGGATGCAACATTGTGGGTTTAGCCAGGGTGACGTGGAGGAACTC ATGTGCCAGGGAGTCAAGCCCTGGGACGATGATGCTTGGGATGTTTTGCACGCACTCTCCTCAGTTAAACTTCGA GTTCGGCCGACACTTACTCCGCAATGGCTACCTCTCACTCATTCACTGACCACTTGTCTTTATACTTACCTCCTT TTCTACGACCAAGTCTACCTCGCGACCTCAGACCGCCACTACCACAGTTACAAGATTCACAAAGTAACCCAGATA CACCTCCGCCCACGCCCGACCGGTCCGAATTGCGAGACAGTGGTACAACCAGTGGGGAGTGTACGCCGGAGAGGC AGTAAATTAGTGAAGGTGGAGTCCAGACCGACGAAGGACAGGCGAATCGAGAAATCGAGGGAGGGATATCAAATT GCTTTGATTCTCAGTAATTCGGGAAGCGTCGCGAGGGACCATTTGGCTTCGGAGAGAACTTTTCTGGCGTATGTG AGGACTAGTCTCGCTACGGCGTCTATGGGTGTAGCTTTGGTCCAGCTGTTCACGATTGCGAATAGTATTGGGACA GTGAAAACACCTCAACAACAGTTTCTGGGAAAGTTCGCGACTCCGCTCGGAGCCACTTTGATTCTATTTGGGCTA ATTATGCTCTGCCTTGGCTGCTTGCGGTATTTCACCATTCAGATAGCTTTGACTCGAGGTGTATTCCCTGCAGCA CGGCTGACCATTACATTTATTGCCGCGGTAGGGACGGCAATAACGGGGATTATCTTTGGCGTCCTGATCAAGGGT CGAGAAGGGTCATAG
Gene	>AgabiH97\|097920 ATGTCAACAACAGAACTTACTCCCGAAGAAGCCCGAGAAAGACTGGTTTTGAAAGCCAAAGAACGCAAGGAAAGG ATCGAGGCAAACCACGAAAAAGCATCTGGCATCATCCAATCCGTATGTCATCCGCTTCAGTATTCTAACAAATGT TCATGCCATGATTAGGGTGATGAATCATTCAACAAGGGAAATTTCACCGAAGCGTTAGAATTTTATTCCCGAGCT GTTCAGTTATGGAATACAAATGTCCATCTGCTCGTCAAGCTCGCGATTGCACATGTCAAATGCAAACAGTCAGTA CCATCAATATTTCCTTTTCGTTGTATCCAGGCTGACGCGTCAACTTCAGATATAAAGAAGCAGTAACTGCTGCTA CACGCGCACTATACATGGATCCTTCTAATCCAGATGCCAGATTTCAACGTGGCCTCGCCCGTCTAGAGCTACATA AAGCCGGTCTCGCCCTAATCGATTTGGAAACCGTTCTAGAGATTAACCCGACGTATCCTGGCTTAACTAGTGCTT TGGAGAGAGTCAAGAAGCAGCTCAACAGTCGAAAAATGAAAAAGAAAACGCGGGCTAAAGAGATAGATGAGGAAT TGATGGGTCCGTTACTTGAGGAAGATGGTATCGAAGAAGCTGATTTGAGTGATTCGGAGGAATCTAAAATGGTTG GGAATGGAATTCCATGCAGGCATTATAATAAGAAGCCTGCAGGTTGCAGAGAGGGGTTGAATTGCAAGTGGATGC ATGCACCTGATGAAACCAGTGTTCGAGATACAACGTAAGCCTTTCCTTTTCTTTTGGGATATAACCGGGCTCACG GCGCAGGGCTAGCGGACGCAATGTTTGCATCTACCACTTACTTGACTCTTGCCGGTTTGGCGAAAAATGTTTCTA TTCACATGATAAGGAGTGGTTGCCGCCGAATGGGTGGTGGACCGATCCTTACAAGATCGCAGTAATGGAAGAGAT TGTGGATATGGCGAGAATGAAAGCCAGGATTCAACAACACAATTTCCAGAAGAGTAAAAGGGAAAACCGGTACGC GCAGAGATCGCGAGGAAGGAAGAATCCACACACTGCTGCTAGTAGTTCTAGTGGTGTGCCTGCAATGATGATGAT GTCTATGGATGCTTATGACAACGACTTGGACGATTTCCGGATGCAACATTGTGGGTTTAGCCAGGGTGACGTGGA GGAACTCATGTGCCAGGGAGTCAAGCCCTGGGACGATGATGCTTGGGTGAGTTACAGATTTGATTTGTGCTCGGA CAAGCTCTTATTCATCGTTTCAATAGGATGTTTTGCACGCACTCTCCTCGTATTGACGTAGTTTTGTTCAGGGAA GAATTGTTTGATAAAAATAGAATATATTACACGTGATGCTACAGAGTTAAACTTCGAGTTCGGCCGACACTTACT CCGCAATGGCTACCTCTCACTCATTCACTGACCACTTGTCTTTATACTTACCTCCTTTTCTACGACCAAGTCTAC CTCGCGACCTCAGACCGCCACTACCACAGTTACAAGATTCACAAAGTAACCCAGATACACCTCCGCCCACGCCCG ACCGGTCCGAATTGCGAGACAGTGGTACAACCAGTGGGGAGTGTACGCCGGGTACGACTGCCATATCATTAAACA ATGAATATCAGGATTCAGAGGAACAGAGAGGCAGTAAATTAGTGAAGGTGGAGTCCAGACCGACGAAGGACAGGC GAATCGAGAAATCGAGGGAGGGATATCAAATTGCTTTGATTCTCAGTAATTCGGGAAGCGTCGCGAGGGACCATT TGGCTTCGGAGAGAACTTTTCTGGCGTATGTGAGGACTAGTCTCGCTACGGCGTCTATGGGTGTAGGTGGGTGTA ATGAAATCTTTGAATTTTTTTTTTGGTATTACTAGTTTTTATTCTTTTCCTTTCGTCTTTTATTCGTAGCTTTGG TCCAGCTGTTCACGATTGCGAATAGTATTGGGACAGTGAAAACACCTCAACAACAGTTTCTGGGAAAGTTCGCGA CTCCGCTCGGAGCCACTTTGATTCTATTTGGGCTAATTATGCTCTGCCTTGGTGAGCCAATCAACCGATACCGTT CTTCGAATGTCACTTAACAAAGTTACACAGGCTGCTTGCGGTATTTCACCATTCAGATAGCTTTGACTCGAGGTG TATTCCCTGCAGCACGGCTGACCATTACATTTATTGCCGCGGTAGGGACGGCAATAACGGGGATTATCTTTGGCG TCCTGATCAAGGGTCGAGAAGGGTCATAG

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