© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|096760 |
| Gene name | |
| Location | scaffold_6:2189765..2191009 |
| Strand | + |
| Gene length (bp) | 1244 |
| Transcript length (bp) | 1080 |
| Coding sequence length (bp) | 1080 |
| Protein length (aa) | 360 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 5.9E-18 | 114 | 333 |
| PF10340 | Say1_Mug180 | Steryl acetyl hydrolase | 1.3E-13 | 108 | 340 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14158|YE76_SCHPO | AB hydrolase superfamily protein C4A8.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.06c PE=3 SV=1 | 102 | 261 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 34 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 32.10 | 16.66 | 47.55 |
| Initials | Initials knots | 15.17 | 7.57 | 22.76 |
| Pileal_Stipeal_center | Stage I stipe center | 16.97 | 8.60 | 25.34 |
| Pileal_Stipeal_shell | Stage I stipe shell | 13.22 | 6.53 | 19.91 |
| DIF_stipe_center | Stage II stipe center | 10.80 | 5.17 | 16.42 |
| DIF_stipe_shell | Stage II stipe shell | 15.12 | 7.55 | 22.69 |
| DIF_stipe_skin | Stage II stipe skin | 15.58 | 7.77 | 23.40 |
| DIF_cap_skin | Stage II cap skin | 15.97 | 8.08 | 23.86 |
| DIF_cap_tissue | Stage II cap tissue | 13.04 | 6.40 | 19.68 |
| DIF_gill_tissue | Stage II gill tissue | 13.98 | 6.92 | 21.03 |
| YFB_stipe_center | Young fruiting body stipe center | 11.34 | 5.47 | 17.20 |
| YFB_stipe_shell | Young fruiting body stipe shell | 11.41 | 5.49 | 17.33 |
| YFB_stipe_skin | Young fruiting body stipe skin | 17.97 | 9.23 | 26.71 |
| YFB_cap_skin | Young fruiting body cap skin | 16.45 | 8.31 | 24.58 |
| YFB_cap_tissue | Young fruiting body cap tissue | 14.77 | 7.37 | 22.17 |
| YFB_gill_tissue | Young fruiting body gill tissue | 14.33 | 7.13 | 21.54 |
| YFB_veil | Young fruiting body veil | 14.54 | 7.27 | 21.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.007782 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.001140 | yes |
| Casing | YFB_stipe_skin | 0.080179 | no |
| Casing | YFB_cap_skin | 0.034837 | yes |
| Casing | YFB_cap_tissue | 0.014081 | yes |
| Casing | YFB_gill_tissue | 0.011041 | yes |
| Casing | YFB_veil | 0.011041 | yes |
| Casing | Initials | 0.020523 | yes |
| Casing | Pileal_Stipeal_center | 0.045060 | yes |
| Casing | Pileal_Stipeal_shell | 0.003765 | yes |
| Casing | DIF_stipe_center | 0.001140 | yes |
| Casing | DIF_stipe_shell | 0.019987 | yes |
| Casing | DIF_stipe_skin | 0.025458 | yes |
| Casing | DIF_cap_skin | 0.025963 | yes |
| Casing | DIF_cap_tissue | 0.003365 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.676100 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.688704 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.578509 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.754057 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.932902 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.969060 | no |
| DIF_gill_tissue | YFB_veil | 0.951852 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.992355 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.221377 | no |
| YFB_stipe_center | YFB_cap_skin | 0.353355 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.576155 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.628688 | no |
| YFB_stipe_center | YFB_veil | 0.606419 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.237447 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.367818 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.590075 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.640833 | no |
| YFB_stipe_shell | YFB_veil | 0.618584 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.881955 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.694970 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.628954 | no |
| YFB_stipe_skin | YFB_veil | 0.663396 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.854737 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.800369 | no |
| YFB_cap_skin | YFB_veil | 0.827895 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.965117 | no |
| YFB_cap_tissue | YFB_veil | 0.982475 | no |
| YFB_gill_tissue | YFB_veil | 0.982398 | no |
| Initials | DIF_gill_tissue | 0.896775 | no |
| Initials | YFB_stipe_center | 0.522164 | no |
| Initials | YFB_stipe_shell | 0.539710 | no |
| Initials | YFB_stipe_skin | 0.749111 | no |
| Initials | YFB_cap_skin | 0.894349 | no |
| Initials | YFB_cap_tissue | 0.969387 | no |
| Initials | YFB_gill_tissue | 0.929682 | no |
| Initials | YFB_veil | 0.950386 | no |
| Initials | Pileal_Stipeal_center | 0.847870 | no |
| Initials | Pileal_Stipeal_shell | 0.809557 | no |
| Initials | DIF_stipe_center | 0.440393 | no |
| Initials | DIF_stipe_shell | 0.995816 | no |
| Initials | DIF_stipe_skin | 0.969566 | no |
| Initials | DIF_cap_skin | 0.937016 | no |
| Initials | DIF_cap_tissue | 0.784393 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.695345 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.300688 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.314608 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.927805 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.962428 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.802367 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.743415 | no |
| Pileal_Stipeal_center | YFB_veil | 0.775268 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.579543 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.230438 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.844360 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.891292 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.924514 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.549426 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.934493 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.783711 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.794256 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.465910 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.642300 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.853594 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.895004 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.876494 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.693501 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.816705 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.760540 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.702496 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.985017 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.583027 | no |
| DIF_stipe_center | YFB_stipe_center | 0.942584 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.934190 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.167110 | no |
| DIF_stipe_center | YFB_cap_skin | 0.267567 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.476917 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.531625 | no |
| DIF_stipe_center | YFB_veil | 0.509284 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.439686 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.375672 | no |
| DIF_stipe_center | DIF_cap_skin | 0.317973 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.717224 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.901835 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.524637 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.541074 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.740753 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.890171 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.973017 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.934534 | no |
| DIF_stipe_shell | YFB_veil | 0.954091 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.966189 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.933251 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.789772 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.855705 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.471769 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.489457 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.796185 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.932469 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.935804 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.890791 | no |
| DIF_stipe_skin | YFB_veil | 0.914475 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.970431 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.733803 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.806870 | no |
| DIF_cap_skin | YFB_stipe_center | 0.403226 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.421858 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.830538 | no |
| DIF_cap_skin | YFB_cap_skin | 0.962878 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.896756 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.847555 | no |
| DIF_cap_skin | YFB_veil | 0.872760 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.674054 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.914126 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.804425 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.815553 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.439451 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.611815 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.829235 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.873088 | no |
| DIF_cap_tissue | YFB_veil | 0.853036 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|096760 MPSPDYAQVTLWEKILLICVLCSWPIAMTLRLLLSPFRSYDRHRSWRRIVSDESFRFISSRLRVNQMQYIMVSTI SVYLEWVQKYSEKTLLDYLDEDGNLMWFTERETTGKVVFYVHGGTYQLPMQKYVPDYWITVLGEMKERIGEEFDL VALCYSLYPSASFPIQLRQAISGLAHLINVNGIKPEDIYLVGDSAGGSLILQVISHLLHPYQDIPVVQLSAPLGG AFLMSPWVSLTTESLSFTANSGSDVLPAETWAYLASAILKELPDDGRPYLEAVKAPKDWWKGVDRLVKKFTILTG AMECLRDDNMNLAAALERHHKDVTLFVQPDGVHTEPYLARMAGDDDQPEILDLIEKHFT* |
| Coding | >AgabiH97|096760 ATGCCTTCTCCCGACTACGCTCAAGTGACCCTCTGGGAGAAAATTCTACTTATTTGTGTCCTATGCAGCTGGCCA ATAGCAATGACTCTCCGACTCCTACTCTCGCCATTCCGTAGCTATGATCGTCATAGGTCCTGGCGTCGCATCGTC AGTGACGAGTCATTCCGCTTCATTAGCTCTCGGCTTCGCGTCAATCAAATGCAATACATAATGGTATCCACAATT TCAGTATATCTGGAATGGGTCCAAAAGTATAGCGAGAAAACTCTGCTCGATTATCTCGACGAGGACGGAAATCTC ATGTGGTTCACTGAACGCGAGACCACGGGGAAAGTGGTTTTTTATGTCCATGGTGGAACATACCAGCTACCTATG CAAAAATATGTTCCTGACTACTGGATCACTGTTCTGGGTGAGATGAAGGAACGCATTGGCGAAGAGTTTGATTTG GTAGCTCTTTGTTATTCGCTCTACCCATCAGCATCTTTCCCTATCCAACTTCGTCAAGCTATCAGTGGCCTCGCA CATCTCATAAACGTCAATGGTATCAAGCCCGAAGATATTTATCTGGTTGGAGATTCCGCTGGTGGAAGCCTTATA CTACAGGTTATTTCCCATCTACTCCATCCCTATCAAGACATACCCGTCGTTCAACTGTCTGCCCCTTTGGGTGGC GCATTCTTGATGTCTCCTTGGGTATCACTCACGACGGAATCCCTCTCATTTACCGCCAACAGCGGAAGCGATGTT CTTCCGGCCGAAACTTGGGCTTATCTCGCCAGTGCTATTCTCAAGGAACTTCCTGATGATGGTAGACCTTACCTT GAAGCTGTGAAGGCGCCAAAAGATTGGTGGAAAGGGGTGGATAGGTTGGTCAAAAAGTTCACTATCTTGACAGGC GCAATGGAATGTCTGCGCGACGATAATATGAATCTCGCCGCGGCGCTTGAACGTCATCACAAGGATGTAACACTG TTTGTTCAACCGGACGGTGTACATACAGAACCTTACCTTGCTCGAATGGCGGGAGACGATGACCAACCAGAAATT CTGGACTTGATAGAGAAACACTTCACATAA |
| Transcript | >AgabiH97|096760 ATGCCTTCTCCCGACTACGCTCAAGTGACCCTCTGGGAGAAAATTCTACTTATTTGTGTCCTATGCAGCTGGCCA ATAGCAATGACTCTCCGACTCCTACTCTCGCCATTCCGTAGCTATGATCGTCATAGGTCCTGGCGTCGCATCGTC AGTGACGAGTCATTCCGCTTCATTAGCTCTCGGCTTCGCGTCAATCAAATGCAATACATAATGGTATCCACAATT TCAGTATATCTGGAATGGGTCCAAAAGTATAGCGAGAAAACTCTGCTCGATTATCTCGACGAGGACGGAAATCTC ATGTGGTTCACTGAACGCGAGACCACGGGGAAAGTGGTTTTTTATGTCCATGGTGGAACATACCAGCTACCTATG CAAAAATATGTTCCTGACTACTGGATCACTGTTCTGGGTGAGATGAAGGAACGCATTGGCGAAGAGTTTGATTTG GTAGCTCTTTGTTATTCGCTCTACCCATCAGCATCTTTCCCTATCCAACTTCGTCAAGCTATCAGTGGCCTCGCA CATCTCATAAACGTCAATGGTATCAAGCCCGAAGATATTTATCTGGTTGGAGATTCCGCTGGTGGAAGCCTTATA CTACAGGTTATTTCCCATCTACTCCATCCCTATCAAGACATACCCGTCGTTCAACTGTCTGCCCCTTTGGGTGGC GCATTCTTGATGTCTCCTTGGGTATCACTCACGACGGAATCCCTCTCATTTACCGCCAACAGCGGAAGCGATGTT CTTCCGGCCGAAACTTGGGCTTATCTCGCCAGTGCTATTCTCAAGGAACTTCCTGATGATGGTAGACCTTACCTT GAAGCTGTGAAGGCGCCAAAAGATTGGTGGAAAGGGGTGGATAGGTTGGTCAAAAAGTTCACTATCTTGACAGGC GCAATGGAATGTCTGCGCGACGATAATATGAATCTCGCCGCGGCGCTTGAACGTCATCACAAGGATGTAACACTG TTTGTTCAACCGGACGGTGTACATACAGAACCTTACCTTGCTCGAATGGCGGGAGACGATGACCAACCAGAAATT CTGGACTTGATAGAGAAACACTTCACATAA |
| Gene | >AgabiH97|096760 ATGCCTTCTCCCGACTACGCTCAAGTGACCCTCTGGGAGAAAATTCTACTTATTTGTGTCCTATGCAGCTGGCGT AAGACTTGACTCTTTATGTCGCGATCTCCCACTGACCACGGGCCTATACGCAGCAATAGCAATGACTCTCCGACT CCTACTCTCGCCATTCCGTAGCTATGATCGTCATAGGTCCTGGCGTCGCATCGTCAGTGACGAGTCATTCCGCTT CATTAGCTCTCGGCTTCGCGTCAATCAAATGCAATACATAATGGTATCCACAATTTCAGTATATCTGGAATGGGT CCAAAAGTATAGCGAGAAAACTCTGCTCGATTATCTCGACGAGGACGGAAATCTCATGTGGTTCACTGAACGCGA GACCACGGGGAAAGTGGTTTTTTATGTCCATGGTAAATTTGAAACGCGAATGCCGAAGTAAAAGAGTAGTGTTGA CTTTTGATTCAGGTGGAACATACCAGCTACCTATGCAAAAATATGTTCCTGACTACTGGATCACTGTTCTGGGTG AGATGAAGGAACGCATTGGCGAAGAGTTTGATTTGGTAGCTCTTTGTTATTGTGAGTGTCTAGATTAATCATCTT ATGAAATTACACCAACATTCTCGTCCTCAGCGCTCTACCCATCAGCATCTTTCCCTATCCAACTTCGTCAAGCTA TCAGTGGCCTCGCACATCTCATAAACGTCAATGGTATCAAGCCCGAAGATATTTATCTGGTTGGAGATTCCGCTG GTGGAAGCCTTATACTACAGGTTATTTCCCATCTACTCCATCCCTATCAAGACATACCCGTCGTTCAACTGTCTG CCCCTTTGGGTGGCGCATTCTTGATGTCTCCTTGGGTATCACTCACGACGGAATCCCTCTCATTTACCGCCAACA GCGGAAGCGATGTTCTTCCGGCCGAAACTTGGGCTTATCTCGCCAGTGCTATTCTCAAGGAACTTCCTGATGATG GTAGACCTTACCTTGAAGCTGTGAAGGCGCCAAAAGATTGGTGGAAAGGGGTGGATAGGTTGGTCAAAAAGTTCA CTATCTTGACAGGCGCAATGGAATGTCTGCGCGACGATAATATGAATCTCGCCGCGGCGCTTGAACGTCATCACA AGGATGTAACACTGTTTGTTCAACCGGACGGTGTACATACAGAACCTTACCTTGCTCGAATGGCGGGAGACGATG ACCAACCAGAAATTCTGGACTTGATAGAGAAACACTTCACATAA |