© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|096400 |
| Gene name | |
| Location | scaffold_6:2074945..2077064 |
| Strand | + |
| Gene length (bp) | 2119 |
| Transcript length (bp) | 1509 |
| Coding sequence length (bp) | 1509 |
| Protein length (aa) | 503 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.0E-18 | 62 | 221 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 8.6E-06 | 59 | 155 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 45 | 492 | 2.0E-40 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 29 | 467 | 8.0E-40 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 43 | 469 | 3.0E-37 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 53 | 256 | 3.0E-22 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 73 | 391 | 6.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 45 | 492 | 2.0E-40 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 29 | 467 | 8.0E-40 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 43 | 469 | 3.0E-37 |
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 53 | 256 | 3.0E-22 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 73 | 391 | 6.0E-11 |
| sp|D8MQN9|MDTG_ERWBE | Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1 | 73 | 210 | 6.0E-10 |
| sp|Q5HHX4|NORA_STAAC | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|P0A0J6|NORA_STAAW | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|P0A0J7|NORA_STAAU | Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|P0A0J5|NORA_STAAN | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|P0A0J4|NORA_STAAM | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|Q6GBD5|NORA_STAAS | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|Q6GIU7|NORA_STAAR | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | 48 | 220 | 2.0E-09 |
| sp|A8GCZ5|MDTG_SERP5 | Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1 | 74 | 210 | 3.0E-09 |
| sp|A7ZZ10|MDTG_ECOHS | Multidrug resistance protein MdtG OS=Escherichia coli O9:H4 (strain HS) GN=mdtG PE=3 SV=1 | 48 | 337 | 1.0E-08 |
| sp|P51563|TCR7_VIBAN | Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1 | 60 | 379 | 2.0E-08 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 68 | 378 | 4.0E-08 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 60 | 258 | 7.0E-08 |
| sp|A7ZKF6|MDTG_ECO24 | Multidrug resistance protein MdtG OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|Q8X9I3|MDTG_ECO57 | Multidrug resistance protein MdtG OS=Escherichia coli O157:H7 GN=mdtG PE=3 SV=2 | 48 | 337 | 4.0E-07 |
| sp|B7M928|MDTG_ECO8A | Multidrug resistance protein MdtG OS=Escherichia coli O8 (strain IAI1) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|Q1RDA5|MDTG_ECOUT | Multidrug resistance protein MdtG OS=Escherichia coli (strain UTI89 / UPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|C4ZRZ3|MDTG_ECOBW | Multidrug resistance protein MdtG OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B1X9G6|MDTG_ECODH | Multidrug resistance protein MdtG OS=Escherichia coli (strain K12 / DH10B) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B1IV49|MDTG_ECOLC | Multidrug resistance protein MdtG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|P25744|MDTG_ECOLI | Multidrug resistance protein MdtG OS=Escherichia coli (strain K12) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B7UP67|MDTG_ECO27 | Multidrug resistance protein MdtG OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B7MIJ4|MDTG_ECO45 | Multidrug resistance protein MdtG OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|A1A9U9|MDTG_ECOK1 | Multidrug resistance protein MdtG OS=Escherichia coli O1:K1 / APEC GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B1LIV8|MDTG_ECOSM | Multidrug resistance protein MdtG OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|Q0P5M9|MFS10_BOVIN | Major facilitator superfamily domain-containing protein 10 OS=Bos taurus GN=MFSD10 PE=2 SV=1 | 101 | 217 | 4.0E-07 |
| sp|Q0TJ20|MDTG_ECOL5 | Multidrug resistance protein MdtG OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|Q8FIR9|MDTG_ECOL6 | Multidrug resistance protein MdtG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B6I9D0|MDTG_ECOSE | Multidrug resistance protein MdtG OS=Escherichia coli (strain SE11) GN=mdtG PE=3 SV=1 | 48 | 337 | 4.0E-07 |
| sp|B7NAS9|MDTG_ECOLU | Multidrug resistance protein MdtG OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 6.0E-07 |
| sp|B7MTI5|MDTG_ECO81 | Multidrug resistance protein MdtG OS=Escherichia coli O81 (strain ED1a) GN=mdtG PE=3 SV=1 | 74 | 337 | 7.0E-07 |
| sp|B7NL82|MDTG_ECO7I | Multidrug resistance protein MdtG OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdtG PE=3 SV=1 | 74 | 337 | 8.0E-07 |
| sp|A1JN04|MDTG_YERE8 | Multidrug resistance protein MdtG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) GN=mdtG PE=3 SV=1 | 74 | 337 | 1.0E-06 |
| sp|B7LFG4|MDTG_ECO55 | Multidrug resistance protein MdtG OS=Escherichia coli (strain 55989 / EAEC) GN=mdtG PE=3 SV=1 | 48 | 337 | 1.0E-06 |
| sp|P0A4K5|PMRA_STRR6 | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | 48 | 211 | 4.0E-06 |
| sp|P0A4K4|PMRA_STRPN | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | 48 | 211 | 4.0E-06 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 74 | 209 | 5.0E-06 |
| sp|B5XXK2|MDTG_KLEP3 | Multidrug resistance protein MdtG OS=Klebsiella pneumoniae (strain 342) GN=mdtG PE=3 SV=1 | 50 | 391 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0051234 | establishment of localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 96 | 118 | 22 |
| 2 | 133 | 155 | 22 |
| 3 | 188 | 210 | 22 |
| 4 | 230 | 252 | 22 |
| 5 | 297 | 319 | 22 |
| 6 | 339 | 361 | 22 |
| 7 | 374 | 396 | 22 |
| 8 | 406 | 428 | 22 |
| 9 | 474 | 496 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 10.10 | 4.16 | 16.05 |
| Initials | Initials knots | 26.90 | 15.21 | 38.59 |
| Pileal_Stipeal_center | Stage I stipe center | 25.87 | 14.65 | 37.09 |
| Pileal_Stipeal_shell | Stage I stipe shell | 13.48 | 7.02 | 19.94 |
| DIF_stipe_center | Stage II stipe center | 18.10 | 9.82 | 26.39 |
| DIF_stipe_shell | Stage II stipe shell | 22.04 | 12.22 | 31.86 |
| DIF_stipe_skin | Stage II stipe skin | 23.85 | 13.37 | 34.32 |
| DIF_cap_skin | Stage II cap skin | 9.14 | 4.51 | 13.77 |
| DIF_cap_tissue | Stage II cap tissue | 9.40 | 4.66 | 14.15 |
| DIF_gill_tissue | Stage II gill tissue | 12.34 | 6.36 | 18.32 |
| YFB_stipe_center | Young fruiting body stipe center | 27.95 | 15.80 | 40.09 |
| YFB_stipe_shell | Young fruiting body stipe shell | 26.70 | 15.18 | 38.23 |
| YFB_stipe_skin | Young fruiting body stipe skin | 32.32 | 18.60 | 46.04 |
| YFB_cap_skin | Young fruiting body cap skin | 14.17 | 7.42 | 20.92 |
| YFB_cap_tissue | Young fruiting body cap tissue | 14.22 | 7.40 | 21.04 |
| YFB_gill_tissue | Young fruiting body gill tissue | 22.82 | 12.58 | 33.05 |
| YFB_veil | Young fruiting body veil | 18.80 | 9.89 | 27.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.711965 | no |
| Casing | YFB_stipe_center | 0.002084 | yes |
| Casing | YFB_stipe_shell | 0.003365 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.434787 | no |
| Casing | YFB_cap_tissue | 0.435497 | no |
| Casing | YFB_gill_tissue | 0.020523 | yes |
| Casing | YFB_veil | 0.092165 | no |
| Casing | Initials | 0.003365 | yes |
| Casing | Pileal_Stipeal_center | 0.004548 | yes |
| Casing | Pileal_Stipeal_shell | 0.532035 | no |
| Casing | DIF_stipe_center | 0.111796 | no |
| Casing | DIF_stipe_shell | 0.025458 | yes |
| Casing | DIF_stipe_skin | 0.013485 | yes |
| Casing | DIF_cap_skin | 0.878185 | no |
| Casing | DIF_cap_tissue | 0.917482 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.004160 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.007782 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.791235 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.787637 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.049046 | yes |
| DIF_gill_tissue | YFB_veil | 0.255586 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.935596 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.755707 | no |
| YFB_stipe_center | YFB_cap_skin | 0.021846 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.022631 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.633455 | no |
| YFB_stipe_center | YFB_veil | 0.264200 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.656290 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.032978 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.035309 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.739028 | no |
| YFB_stipe_shell | YFB_veil | 0.348230 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.002084 | yes |
| YFB_stipe_skin | YFB_cap_tissue | 0.003365 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.308718 | no |
| YFB_stipe_skin | YFB_veil | 0.085045 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.995158 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.143758 | no |
| YFB_cap_skin | YFB_veil | 0.498713 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.150982 | no |
| YFB_cap_tissue | YFB_veil | 0.508275 | no |
| YFB_gill_tissue | YFB_veil | 0.677014 | no |
| Initials | DIF_gill_tissue | 0.009773 | yes |
| Initials | YFB_stipe_center | 0.949162 | no |
| Initials | YFB_stipe_shell | 0.989125 | no |
| Initials | YFB_stipe_skin | 0.665615 | no |
| Initials | YFB_cap_skin | 0.028437 | yes |
| Initials | YFB_cap_tissue | 0.030851 | yes |
| Initials | YFB_gill_tissue | 0.715889 | no |
| Initials | YFB_veil | 0.319589 | no |
| Initials | Pileal_Stipeal_center | 0.946077 | no |
| Initials | Pileal_Stipeal_shell | 0.015529 | yes |
| Initials | DIF_stipe_center | 0.234962 | no |
| Initials | DIF_stipe_shell | 0.640545 | no |
| Initials | DIF_stipe_skin | 0.802297 | no |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.001140 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.014374 | yes |
| Pileal_Stipeal_center | YFB_stipe_center | 0.889878 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.955815 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.579151 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.048007 | yes |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.050499 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.801082 | no |
| Pileal_Stipeal_center | YFB_veil | 0.399849 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.024698 | yes |
| Pileal_Stipeal_center | DIF_stipe_center | 0.308631 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.730538 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.880038 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.001140 | yes |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.883186 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.009773 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.018624 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.001140 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.937512 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.932526 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.092503 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.396977 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.453780 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.126467 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.058732 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.293376 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.354208 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.301454 | no |
| DIF_stipe_center | YFB_stipe_center | 0.187799 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.256658 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.055979 | no |
| DIF_stipe_center | YFB_cap_skin | 0.561022 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.573490 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.581008 | no |
| DIF_stipe_center | YFB_veil | 0.954369 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.660176 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.473798 | no |
| DIF_stipe_center | DIF_cap_skin | 0.030134 | yes |
| DIF_stipe_center | DIF_cap_tissue | 0.037593 | yes |
| DIF_stipe_shell | DIF_gill_tissue | 0.064705 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.548492 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.653473 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.249725 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.185817 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.190974 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.954167 | no |
| DIF_stipe_shell | YFB_veil | 0.748104 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.885220 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.004160 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.003765 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.032504 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.721683 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.815058 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.389542 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.096785 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.100086 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.937611 | no |
| DIF_stipe_skin | YFB_veil | 0.569883 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.001140 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.002084 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.481021 | no |
| DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.223600 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.219988 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.001625 | yes |
| DIF_cap_skin | YFB_veil | 0.021583 | yes |
| DIF_cap_skin | DIF_cap_tissue | 0.965931 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.538051 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.000613 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.264618 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.263795 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.004160 | yes |
| DIF_cap_tissue | YFB_veil | 0.027451 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|096400 MAYVSPLDSLFYQKTVKAPESSGETTLMTMTSIHATDEETPLLQDQPRKKTPLPWFQLWLVILLQMGESMTAQVI SPFAPQLIRDLGVAGGDETKVGYYVGMMYSIFFLTQAFTVLHWSRLSDKVGRKPAILIGTFGLSISMYYFGLSTT FLGVILSRASNGALNGNTAVMKSVVAELTDSTNIAQAFAYNSLAWASGGTLGPFVGGLLARPAEQFPSIFGDNAF LKKHPYFLPCAVPATYSACAWLIAYLFLKETVQQPISIRELVFKSANKTRPSPNLETIITEDTNRPLPLKSLLVT KVVVAGSNYAFLALVDISFRAVQPLFLSTPIELGGLGLPPSTIGNILSFFGIINGVFQVFFFAKINDRWGPKRVF LAGIGVCIPLYLLFPIINYLASTQGMTPIVWAAVIVQVTLSMLPNCAYSSIFIFIAAASPNRASVGATNGLCQVA VSVARGLGPGIVSSLFSLSMAHDWFGGYLVYYIFVMAVGVALFVGSTLPHSL* |
| Coding | >AgabiH97|096400 ATGGCTTACGTATCGCCTCTTGACAGTCTTTTCTACCAAAAGACCGTCAAGGCCCCTGAATCATCAGGCGAGACG ACACTGATGACTATGACGAGTATTCATGCAACAGATGAAGAAACGCCTCTATTACAAGACCAGCCCCGGAAAAAG ACACCCTTGCCATGGTTCCAATTGTGGCTCGTAATCCTTTTGCAGATGGGTGAATCAATGACTGCTCAAGTCATA TCTCCGTTCGCCCCACAGCTCATTCGGGATCTGGGAGTTGCTGGAGGAGACGAGACTAAGGTTGGATACTATGTG GGAATGATGTACTCCATTTTCTTTCTCACCCAAGCCTTTACGGTCCTACATTGGAGTCGACTTTCTGACAAGGTC GGTCGTAAGCCAGCCATTCTAATTGGCACGTTCGGTCTCTCCATATCCATGTATTACTTCGGCTTGTCAACGACC TTCCTGGGCGTGATACTCAGCCGAGCCTCAAATGGAGCACTTAATGGAAATACTGCGGTCATGAAAAGCGTGGTC GCAGAACTTACAGACTCGACGAATATAGCCCAGGCGTTCGCGTACAACTCACTTGCATGGGCCTCAGGCGGAACT TTGGGTCCTTTCGTTGGAGGGTTACTGGCACGCCCTGCCGAACAGTTTCCCTCCATATTTGGCGACAATGCCTTC CTGAAGAAGCACCCTTATTTCCTTCCTTGTGCTGTCCCAGCAACGTACTCCGCTTGCGCATGGCTTATCGCCTAC CTATTTCTAAAAGAGACGGTCCAGCAGCCAATTTCAATCCGAGAACTCGTTTTTAAATCGGCGAACAAAACTCGA CCCAGCCCAAACCTGGAGACAATCATCACTGAAGATACTAATAGACCTCTACCACTAAAGTCACTGTTGGTGACT AAGGTGGTCGTAGCAGGATCGAACTACGCTTTCTTGGCTTTGGTGGATATCTCTTTCCGTGCGGTTCAGCCGCTT TTCTTGTCAACACCCATTGAACTGGGTGGGCTTGGCCTTCCTCCATCTACCATTGGGAATATCCTGTCATTTTTC GGTATAATCAATGGAGTCTTTCAAGTATTCTTCTTCGCGAAAATAAATGACCGTTGGGGTCCGAAGAGAGTCTTT TTGGCAGGCATCGGGGTTTGTATCCCTTTGTACCTCCTCTTTCCGATCATCAACTATCTAGCGAGTACACAAGGA ATGACACCCATCGTCTGGGCCGCTGTGATTGTTCAGGTCACATTGTCGATGCTACCGAACTGTGCATATAGTTCT ATCTTCATTTTTATCGCTGCTGCTTCTCCCAATAGGGCATCCGTTGGTGCAACTAACGGATTATGTCAGGTGGCT GTTAGTGTGGCGCGGGGTCTTGGCCCAGGGATAGTAAGTTCACTATTTTCGTTGTCGATGGCCCATGATTGGTTT GGTGGATATCTTGTTTACTATATATTCGTAATGGCTGTTGGAGTTGCGCTCTTTGTGGGGTCAACGTTGCCTCAT TCTCTATGA |
| Transcript | >AgabiH97|096400 ATGGCTTACGTATCGCCTCTTGACAGTCTTTTCTACCAAAAGACCGTCAAGGCCCCTGAATCATCAGGCGAGACG ACACTGATGACTATGACGAGTATTCATGCAACAGATGAAGAAACGCCTCTATTACAAGACCAGCCCCGGAAAAAG ACACCCTTGCCATGGTTCCAATTGTGGCTCGTAATCCTTTTGCAGATGGGTGAATCAATGACTGCTCAAGTCATA TCTCCGTTCGCCCCACAGCTCATTCGGGATCTGGGAGTTGCTGGAGGAGACGAGACTAAGGTTGGATACTATGTG GGAATGATGTACTCCATTTTCTTTCTCACCCAAGCCTTTACGGTCCTACATTGGAGTCGACTTTCTGACAAGGTC GGTCGTAAGCCAGCCATTCTAATTGGCACGTTCGGTCTCTCCATATCCATGTATTACTTCGGCTTGTCAACGACC TTCCTGGGCGTGATACTCAGCCGAGCCTCAAATGGAGCACTTAATGGAAATACTGCGGTCATGAAAAGCGTGGTC GCAGAACTTACAGACTCGACGAATATAGCCCAGGCGTTCGCGTACAACTCACTTGCATGGGCCTCAGGCGGAACT TTGGGTCCTTTCGTTGGAGGGTTACTGGCACGCCCTGCCGAACAGTTTCCCTCCATATTTGGCGACAATGCCTTC CTGAAGAAGCACCCTTATTTCCTTCCTTGTGCTGTCCCAGCAACGTACTCCGCTTGCGCATGGCTTATCGCCTAC CTATTTCTAAAAGAGACGGTCCAGCAGCCAATTTCAATCCGAGAACTCGTTTTTAAATCGGCGAACAAAACTCGA CCCAGCCCAAACCTGGAGACAATCATCACTGAAGATACTAATAGACCTCTACCACTAAAGTCACTGTTGGTGACT AAGGTGGTCGTAGCAGGATCGAACTACGCTTTCTTGGCTTTGGTGGATATCTCTTTCCGTGCGGTTCAGCCGCTT TTCTTGTCAACACCCATTGAACTGGGTGGGCTTGGCCTTCCTCCATCTACCATTGGGAATATCCTGTCATTTTTC GGTATAATCAATGGAGTCTTTCAAGTATTCTTCTTCGCGAAAATAAATGACCGTTGGGGTCCGAAGAGAGTCTTT TTGGCAGGCATCGGGGTTTGTATCCCTTTGTACCTCCTCTTTCCGATCATCAACTATCTAGCGAGTACACAAGGA ATGACACCCATCGTCTGGGCCGCTGTGATTGTTCAGGTCACATTGTCGATGCTACCGAACTGTGCATATAGTTCT ATCTTCATTTTTATCGCTGCTGCTTCTCCCAATAGGGCATCCGTTGGTGCAACTAACGGATTATGTCAGGTGGCT GTTAGTGTGGCGCGGGGTCTTGGCCCAGGGATAGTAAGTTCACTATTTTCGTTGTCGATGGCCCATGATTGGTTT GGTGGATATCTTGTTTACTATATATTCGTAATGGCTGTTGGAGTTGCGCTCTTTGTGGGGTCAACGTTGCCTCAT TCTCTATGA |
| Gene | >AgabiH97|096400 ATGGCTTACGTATCGCCGTCGAGTTGAGTCAACCGGCAGACCTAAATGATTGTGGTTAAGGGGCCTTCTCTCGTG AACTCCTCCTTCCTTACAGTCTTGACAGTCTTTTCTACCAAAAGGCATGTTTCCCTCAGGCTCTAATTTACCCTC ACTGAATTAAACCCCAGACCGTCAAGGCCCCTGAATCATCAGGCGAGACGACACTGATGACTATGACGAGTATTC ATGCAACAGATGAAGAAACGCCTCTATTACAAGACCAGCCCCGGAAAAAGACACCCTTGCCATGGTTCCAATTGT GGCTCGTAATCCTTTTGCAGATGGGTGAATCAATGACTGCTCAAGTCATATCTCCGTTCGCCCCACAGGTGAGCA TGATTATGAACGGATCGAATAATGGTTTATCCCTAAGAATTCAGCTCATTCGGGATCTGGGAGTTGCTGGAGGAG ACGAGACTAAGGTTGGATACTATGTGGGAATGATGGTATGCTAGTTTTCTTACCTGTGACGCCAACCTTTGACTC GAACACCCGATGTCTAGTACTCCATTTTCTTTCTCACCCAAGCCTTTACGGTCCTACATTGGAGTCGACTTTCTG ACAAGGTCGGTCGTAAGCCAGCCATTCTAATTGGCACGTTCGGTCTCTCCATATCCATGTATTACTTCGGCTTGT CAACGACCTTCCTGGGCGTGATACTCAGGTAATCTTTTGAATAATAATACTCCCAGATATACATACTCATACTAC CTCGATAGCCGAGCCTCAAATGGAGCACTTAGTAGGTCTTTCTGTTATTATTATGCGTTCACGAGTTTACTTTCT CCAATAAACAGATGGAAATACTGCGGTCATGAAAAGGTTTGAGTCTCTGATATCAAGATGAGCTCGGGTGCTCAA TCGAGTTCGCTTAGCGTGGTCGCAGAACTTACAGACTCGACGAATATAGCCCAGGTAAAAGCTGTTTTCGTCAAA TATGATGACCTGGTTCACTGTTATAGGCGTTCGCGTACAACTCACTTGCATGGGCCTCAGGCGGAACTGTAAGCA TTGGCCCACTCCTAAGCTATTTCTTGACAATATGATTCACAGTTGGGTCCTTTCGTTGGAGGGTTACTGGCACGC CCTGCCGAACAGTTTCCCTCCATATTTGGCGACAATGCCTTCCTGAAGAAGCACCCTTATTTCCTTCCTTGTGCT GTCCCAGCAACGTACTCCGCTTGCGCATGGCTTATCGCCTACCTATTTCTAAAAGAGACGGTCCAGCAGCCAATT TCAATCCGAGAACTCGTTTTTAAATCGGCGAACAAAACTCGACCCAGCCCAAACCTGGAGACAATCATCACTGAA GATACTAATAGACCTCTACCACTAAAGTCACTGTTGGTGACTAAGGTGGTCGTAGCAGGATCGAACTACGCTTTC TTGGCTTTGGTGGATATCTCTTTCCGTGCGGTTCAGCCGCTTTTCTTGTCAACACCCATTGAACTGGGTGGGCTT GGCCTTCCTCCATCTACCATTGGGAATATCCTGTCATTTTTCGGTATAATCAATGGAGTCTTTCAAGTATTCTTC TTCGCGAAAATAAATGACCGTTGGGGTCCGAAGAGAGTCTTTTTGGCAGGCATCGGGGTTTGTATCCCTTTGTAC CTCCTCTTTCCGATCATCAACTATCTAGCGAGTACACAAGGAATGACACCCATCGTCTGGGCCGCTGTGATTGTT CAGGTCACATTGTCGATGCTACCGAACTGTGCATATAGTGCGTGGTTCATGTCTGATGATGCCATTCATTGCCGA GCGAAGATATAATCAAGGTTCTATCTTCATTTTTATCGCTGCTGCTTCTCCCAATAGGGCATCCGTTGGTGCAAC TAACGGATTATGTCAGGTTTGTTGTCTCAGCGCGAATGACTTCATTTTCGTTTACTAATTCATGTGTTTCTCGCT ACAGGTGGCTGTTAGTGTGGCGCGGGGTCTTGGCCCAGGGATAGTAAGTTCACTATTTTCGTTGTCGATGGCCCA TGATTGGTTTGGTGGATATCTTGTTTACTATATATTCGTAATGGCTGTTGGAGTTGCGCTCTTTGTGGGGTCAAC GTTGCCTCATTCTCTATGA |