Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|096380
Gene name
Locationscaffold_6:2071979..2073335
Strand-
Gene length (bp)1356
Transcript length (bp)1356
Coding sequence length (bp)1356
Protein length (aa) 452

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.2E-06 51 95

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear export signal 0.7044 0.6008 0.085 0.0736 0.2445 0.0064 0.0541 0.1844 0.0837 0.0051

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup10545
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|096380
Agaricus bisporus var bisporus H97 AgabiH97|096380 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|096380
MSSEFSSKADGICYINNRLSQLEEQIQLILAERVSFLHQLNDFQSSDSIFPDEILSAIFVMACKRPDELVSPVVL
GAVCSRWRRIAWGMPSLWSSLGPIPPCRPIRHVDVEILSLYFQNTAQHPIDLDLRLDCLPPKRRDSKEFLYVIFE
ENPSKVQKLTFSTSNSIATFNMVERAIKFSNLPCLSTISFVARKIGHNVRPTPLLPNLFRSAINVRTLSFDSYQL
SYMWAISWSSITVLRLRNIAIDQCVHILSICSKMVEFHCSLPGPAPDGFRPPSLPVKELKNLEIFDVNLDRAKYI
DGYLVNANSQWVSCLLAHFRFPNLKHMGWGEISTSPDTYASFLGVMQSLITFKCTSFHRSCHIGRILQLLSSTVR
RVDLPHLTYNPENNLHTLKAIVANFIVPESQGTRNLELIFPDTPFGSGLCTTLENFRKMGLNLKISSTAYDVYQS
A*
Coding >AgabiH97|096380
ATGTCTTCCGAATTTTCATCGAAGGCAGATGGAATTTGTTACATCAATAACCGGCTTTCTCAGCTCGAAGAGCAG
ATCCAACTGATTCTCGCTGAACGTGTTTCGTTTCTCCATCAACTGAATGACTTCCAATCCTCTGACAGTATCTTT
CCCGACGAGATCTTATCCGCTATCTTCGTAATGGCGTGCAAGCGCCCCGACGAGCTAGTTTCGCCTGTCGTTCTC
GGAGCAGTATGCTCTCGATGGCGCAGAATTGCATGGGGTATGCCCTCCCTCTGGTCATCTCTAGGACCCATTCCT
CCATGCCGCCCAATCCGACACGTGGATGTGGAAATACTGAGTTTGTATTTCCAAAACACTGCACAACATCCAATA
GACCTCGACCTTCGCCTTGACTGCTTACCTCCTAAACGACGAGACTCGAAGGAGTTTCTCTATGTCATTTTTGAG
GAGAATCCGTCCAAAGTGCAAAAACTCACTTTCTCCACTTCTAATTCAATCGCCACCTTCAACATGGTAGAGCGG
GCTATCAAATTTTCTAATCTTCCATGCCTCTCTACGATTTCTTTCGTAGCAAGGAAAATTGGACACAATGTTCGT
CCTACACCCTTACTACCAAACCTCTTTCGTTCTGCGATAAACGTTCGCACCTTGTCATTCGACTCGTACCAACTT
TCCTACATGTGGGCGATATCCTGGAGTTCCATCACCGTGCTCCGATTGCGGAATATTGCCATTGATCAATGCGTA
CACATCCTTTCAATCTGTTCAAAGATGGTGGAATTTCATTGCTCGTTACCGGGTCCAGCCCCGGATGGGTTTCGG
CCCCCCTCTCTCCCTGTAAAAGAACTCAAGAACCTGGAGATCTTTGATGTTAATCTAGATAGAGCGAAGTACATC
GATGGATATCTGGTCAACGCCAATTCTCAGTGGGTATCTTGCCTTTTGGCGCATTTCCGGTTCCCCAACTTGAAG
CACATGGGATGGGGAGAAATATCGACATCACCGGACACTTATGCATCGTTCCTCGGCGTTATGCAGTCTCTGATA
ACCTTCAAATGCACATCATTCCATCGTTCCTGTCATATAGGACGAATTTTACAGCTCCTGAGCTCCACTGTCAGA
AGAGTAGATTTGCCGCACCTCACATACAACCCAGAGAATAATCTTCATACTTTGAAGGCTATTGTGGCGAATTTT
ATAGTGCCCGAATCTCAGGGCACGAGGAACCTGGAGCTTATCTTCCCTGATACCCCGTTCGGCTCAGGTTTATGC
ACAACTCTAGAGAACTTTCGCAAAATGGGTCTGAATTTGAAGATCAGTTCTACGGCGTATGACGTCTATCAATCT
GCTTGA
Transcript >AgabiH97|096380
ATGTCTTCCGAATTTTCATCGAAGGCAGATGGAATTTGTTACATCAATAACCGGCTTTCTCAGCTCGAAGAGCAG
ATCCAACTGATTCTCGCTGAACGTGTTTCGTTTCTCCATCAACTGAATGACTTCCAATCCTCTGACAGTATCTTT
CCCGACGAGATCTTATCCGCTATCTTCGTAATGGCGTGCAAGCGCCCCGACGAGCTAGTTTCGCCTGTCGTTCTC
GGAGCAGTATGCTCTCGATGGCGCAGAATTGCATGGGGTATGCCCTCCCTCTGGTCATCTCTAGGACCCATTCCT
CCATGCCGCCCAATCCGACACGTGGATGTGGAAATACTGAGTTTGTATTTCCAAAACACTGCACAACATCCAATA
GACCTCGACCTTCGCCTTGACTGCTTACCTCCTAAACGACGAGACTCGAAGGAGTTTCTCTATGTCATTTTTGAG
GAGAATCCGTCCAAAGTGCAAAAACTCACTTTCTCCACTTCTAATTCAATCGCCACCTTCAACATGGTAGAGCGG
GCTATCAAATTTTCTAATCTTCCATGCCTCTCTACGATTTCTTTCGTAGCAAGGAAAATTGGACACAATGTTCGT
CCTACACCCTTACTACCAAACCTCTTTCGTTCTGCGATAAACGTTCGCACCTTGTCATTCGACTCGTACCAACTT
TCCTACATGTGGGCGATATCCTGGAGTTCCATCACCGTGCTCCGATTGCGGAATATTGCCATTGATCAATGCGTA
CACATCCTTTCAATCTGTTCAAAGATGGTGGAATTTCATTGCTCGTTACCGGGTCCAGCCCCGGATGGGTTTCGG
CCCCCCTCTCTCCCTGTAAAAGAACTCAAGAACCTGGAGATCTTTGATGTTAATCTAGATAGAGCGAAGTACATC
GATGGATATCTGGTCAACGCCAATTCTCAGTGGGTATCTTGCCTTTTGGCGCATTTCCGGTTCCCCAACTTGAAG
CACATGGGATGGGGAGAAATATCGACATCACCGGACACTTATGCATCGTTCCTCGGCGTTATGCAGTCTCTGATA
ACCTTCAAATGCACATCATTCCATCGTTCCTGTCATATAGGACGAATTTTACAGCTCCTGAGCTCCACTGTCAGA
AGAGTAGATTTGCCGCACCTCACATACAACCCAGAGAATAATCTTCATACTTTGAAGGCTATTGTGGCGAATTTT
ATAGTGCCCGAATCTCAGGGCACGAGGAACCTGGAGCTTATCTTCCCTGATACCCCGTTCGGCTCAGGTTTATGC
ACAACTCTAGAGAACTTTCGCAAAATGGGTCTGAATTTGAAGATCAGTTCTACGGCGTATGACGTCTATCAATCT
GCTTGA
Gene >AgabiH97|096380
ATGTCTTCCGAATTTTCATCGAAGGCAGATGGAATTTGTTACATCAATAACCGGCTTTCTCAGCTCGAAGAGCAG
ATCCAACTGATTCTCGCTGAACGTGTTTCGTTTCTCCATCAACTGAATGACTTCCAATCCTCTGACAGTATCTTT
CCCGACGAGATCTTATCCGCTATCTTCGTAATGGCGTGCAAGCGCCCCGACGAGCTAGTTTCGCCTGTCGTTCTC
GGAGCAGTATGCTCTCGATGGCGCAGAATTGCATGGGGTATGCCCTCCCTCTGGTCATCTCTAGGACCCATTCCT
CCATGCCGCCCAATCCGACACGTGGATGTGGAAATACTGAGTTTGTATTTCCAAAACACTGCACAACATCCAATA
GACCTCGACCTTCGCCTTGACTGCTTACCTCCTAAACGACGAGACTCGAAGGAGTTTCTCTATGTCATTTTTGAG
GAGAATCCGTCCAAAGTGCAAAAACTCACTTTCTCCACTTCTAATTCAATCGCCACCTTCAACATGGTAGAGCGG
GCTATCAAATTTTCTAATCTTCCATGCCTCTCTACGATTTCTTTCGTAGCAAGGAAAATTGGACACAATGTTCGT
CCTACACCCTTACTACCAAACCTCTTTCGTTCTGCGATAAACGTTCGCACCTTGTCATTCGACTCGTACCAACTT
TCCTACATGTGGGCGATATCCTGGAGTTCCATCACCGTGCTCCGATTGCGGAATATTGCCATTGATCAATGCGTA
CACATCCTTTCAATCTGTTCAAAGATGGTGGAATTTCATTGCTCGTTACCGGGTCCAGCCCCGGATGGGTTTCGG
CCCCCCTCTCTCCCTGTAAAAGAACTCAAGAACCTGGAGATCTTTGATGTTAATCTAGATAGAGCGAAGTACATC
GATGGATATCTGGTCAACGCCAATTCTCAGTGGGTATCTTGCCTTTTGGCGCATTTCCGGTTCCCCAACTTGAAG
CACATGGGATGGGGAGAAATATCGACATCACCGGACACTTATGCATCGTTCCTCGGCGTTATGCAGTCTCTGATA
ACCTTCAAATGCACATCATTCCATCGTTCCTGTCATATAGGACGAATTTTACAGCTCCTGAGCTCCACTGTCAGA
AGAGTAGATTTGCCGCACCTCACATACAACCCAGAGAATAATCTTCATACTTTGAAGGCTATTGTGGCGAATTTT
ATAGTGCCCGAATCTCAGGGCACGAGGAACCTGGAGCTTATCTTCCCTGATACCCCGTTCGGCTCAGGTTTATGC
ACAACTCTAGAGAACTTTCGCAAAATGGGTCTGAATTTGAAGATCAGTTCTACGGCGTATGACGTCTATCAATCT
GCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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