Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|096260
Gene name
Locationscaffold_6:2040678..2042395
Strand+
Gene length (bp)1717
Transcript length (bp)801
Coding sequence length (bp)801
Protein length (aa) 267

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 3.0E-15 163 238

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Signal peptide|Transmembrane domain 0.0867 0.08 0.2643 0.5653 0.0756 0.0047 0.0887 0.3509 0.5336 0.0139

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 12 34 22
2 46 68 22
3 83 105 22
4 118 140 22
5 155 177 22
6 198 220 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|096260
MAGPAEDFHGPMLIGTVFNLLLFGVMIAQVYFYFTSYARDRLFLKLFVLALFAVDATNSVFNVVFIYVCLVLHFG
DADYLKVTNWQFATGPTLTAVIALMVQLFFTWRVYVLTRNRLLVVIVGLLALASAVCGCLTTWEVIAIPQFARFQ
NFRGIVIVWLAAAACADIMITIILVWHLGSDMVVDRIIRLTVQTGLATSIVATVDLTLYLASTSGIHLLFNFALC
KLYSNSLMSSLNSHNLIILKILKIRRMAHDVSTSRKGRKLP*
Coding >AgabiH97|096260
ATGGCAGGGCCAGCAGAGGATTTTCATGGGCCGATGCTTATCGGCACTGTCTTCAATCTCCTTCTCTTCGGCGTC
ATGATAGCTCAGGTCTATTTCTATTTTACGAGCTACGCACGTGACAGACTCTTCCTGAAATTATTCGTCCTTGCG
CTCTTCGCGGTCGACGCCACCAACTCCGTATTTAACGTCGTGTTCATATATGTCTGTTTAGTTTTGCACTTTGGA
GATGCAGATTACTTGAAAGTGACAAATTGGCAATTCGCAACAGGTCCTACGTTGACGGCTGTAATCGCGCTAATG
GTTCAGCTTTTCTTCACTTGGAGAGTGTATGTGTTAACAAGAAATCGGCTGTTGGTGGTTATCGTTGGGCTGCTC
GCTCTGGCATCGGCAGTATGTGGCTGCCTTACAACCTGGGAGGTCATTGCTATCCCGCAGTTCGCTAGATTCCAA
AATTTCAGGGGCATTGTAATTGTCTGGTTAGCCGCCGCCGCATGTGCGGATATCATGATCACTATTATCCTTGTG
TGGCATTTGGGGTCAGACATGGTTGTCGATCGCATTATTCGCTTGACCGTGCAAACTGGCCTTGCTACTTCCATA
GTGGCTACCGTCGATTTGACACTATATCTCGCTAGTACTTCTGGAATACACTTGTTATTCAATTTCGCCCTGTGC
AAGCTCTATTCGAATTCTCTCATGAGTAGTCTCAACTCTCACAACCTGATAATCCTGAAAATCCTGAAAATCCGA
CGAATGGCTCATGACGTTTCCACCTCGCGGAAAGGCCGCAAACTACCATGA
Transcript >AgabiH97|096260
ATGGCAGGGCCAGCAGAGGATTTTCATGGGCCGATGCTTATCGGCACTGTCTTCAATCTCCTTCTCTTCGGCGTC
ATGATAGCTCAGGTCTATTTCTATTTTACGAGCTACGCACGTGACAGACTCTTCCTGAAATTATTCGTCCTTGCG
CTCTTCGCGGTCGACGCCACCAACTCCGTATTTAACGTCGTGTTCATATATGTCTGTTTAGTTTTGCACTTTGGA
GATGCAGATTACTTGAAAGTGACAAATTGGCAATTCGCAACAGGTCCTACGTTGACGGCTGTAATCGCGCTAATG
GTTCAGCTTTTCTTCACTTGGAGAGTGTATGTGTTAACAAGAAATCGGCTGTTGGTGGTTATCGTTGGGCTGCTC
GCTCTGGCATCGGCAGTATGTGGCTGCCTTACAACCTGGGAGGTCATTGCTATCCCGCAGTTCGCTAGATTCCAA
AATTTCAGGGGCATTGTAATTGTCTGGTTAGCCGCCGCCGCATGTGCGGATATCATGATCACTATTATCCTTGTG
TGGCATTTGGGGTCAGACATGGTTGTCGATCGCATTATTCGCTTGACCGTGCAAACTGGCCTTGCTACTTCCATA
GTGGCTACCGTCGATTTGACACTATATCTCGCTAGTACTTCTGGAATACACTTGTTATTCAATTTCGCCCTGTGC
AAGCTCTATTCGAATTCTCTCATGAGTAGTCTCAACTCTCACAACCTGATAATCCTGAAAATCCTGAAAATCCGA
CGAATGGCTCATGACGTTTCCACCTCGCGGAAAGGCCGCAAACTACCATGA
Gene >AgabiH97|096260
ATGGCAGGGCCAGCAGAGGATTTGTATGTCTTATCCATACCCTTTCATACGCACCATATCGAATCAGCGTGGTCA
ACAGTCATGGGCCGATGCTTATCGGCACTGTCTTCAATCTCCTTCTCTTCGGCGTCATGATAGCTCAGGTCTATT
TCTATTTTACGAGCTACGCACGGTGAGAGGGATTCTTGCTGGTATCGATGCTGTCCATAATCAATATTGTTTACA
GTGACAGACTCTTCCTGAAATTATTCGTACGTTATGCGATAAACATTATCCTGAACAACTCTCGAAATATGCATT
ATGGCTCAGGTCCTTGCGCTCTTCGCGGTCGACGCCACCAACTCCGTATTTAACGTCGTGTTCATATATGTCTGT
TTAGTTTTGCACTTTGGTAAGTGACACTTGGCGCCCATACAGTATTTGATAACTGAACGAATGTAATGGTTTGCA
GGAGATGCAGATTACTTGAAAGTGACAAATTGGCGTATGTATTTTTTTGGCCTCTGTCAGAATTATCTGATCTCG
TCATGTAGAATTCGCAACAGGTGATGGTGCTTCTTTTGAGAGAGGCAGAATTTTACTGAATTATACCCGCGGCGG
AAACGTAGGTCCTACGTTGACGGTAAGCCGGACGGAAGATATACAAAGGCGCATCTAATACTATATGTTGGGTAT
AAAGGCTGTAATCGCGCTAATGGTTCAGCTTTTCTTCACTTGGAGAGTGTATGTGTTAACAAGAAATCGGCTGTT
GGTGGTTATCGTTGGGCTGCTCGCTCTGGCATCGGCAGGTACTACCCTTTGAATACCTTCAAGGCTCTTTCTCTC
TCCTAATTTTTTCTCAGTATGTGGCTGCCTTACAACCTGGGAGGTCATTGCTATCCCGCAGTTCGCTAGATTCCA
AAATTTCAGGGTAAGCTAAAGTATACTTGAAGCTAAAGCATTCTTGTCATACAAATGAAGGGCATTGTAATTGTC
TGGTTAGCCGCCGCCGCATGTGCGGATATCATGATCACTATTATCCTTGTGTGGCATTTGTGAGTAGCTCGTCAA
TGTTCAGAGTAATATTTTTATAACCTCCCTATTAGGGTAAGCTGAGGCGGACATTCTACCAAGTTATGACTGCTC
ACCTTTACGTAGCAGAAACATAAGACAGGTTTCAGGGGGTCAGACATGGTTGTCGATCGCATTATTCGCTGTGCG
TGAAATTTGACTTGTGATTTACTTCACGACTTACAGTGAAACCTACTTAGTGACCGTGCAAACTGGCCTTGCTAC
TTCCATAGTGGCTACCGTCGATTTGACACTATATCTCGCTAGTGTAAGCACATCTGTTTTATCTGTGTGTCTAGA
CTGATCTATTGAATCGCGGTTCTCGAAGACTTCTGGAATGTGAGTGACGTAAATCAATGAAGTTTTGATTTTATA
CGATTAAGCTTTCTATGGACCTACAGACACTTGTTATTCAATTTCGCCCTGTGCAAGCTCTATTCGAATTCTCTC
ATGAGTAGTCTCAACTCTCGTAATCGTTGGAGGAGGCATATTCCGGCTTCGGAGATCATATTCACTGAGGGACCT
AGACAACCTGATAATCCTGAAAATCCTGAAAATCCGACGAATGGCTCATGACGTTTCCACCTCGCGGAAAGGGTA
CGGATTTTGTAGTTTTCCCAATACTATATACTAATAAGATTCATATATTAGCCGCAAACTACCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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