© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|096240 |
| Gene name | |
| Location | scaffold_6:2030262..2033120 |
| Strand | - |
| Gene length (bp) | 2858 |
| Transcript length (bp) | 1962 |
| Coding sequence length (bp) | 1962 |
| Protein length (aa) | 654 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11915 | DUF3433 | Protein of unknown function (DUF3433) | 1.8E-16 | 109 | 196 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1038 | 0.0697 | 0.1489 | 0.7194 | 0.0362 | 0.009 | 0.312 | 0.6552 | 0.3771 | 0.004 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 104 | 126 | 22 |
| 3 | 176 | 198 | 22 |
| 4 | 512 | 534 | 22 |
| Orthofinder run ID | 1 |
| Orthogroup | 1115 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|096240 MADSPRRVLSDSSESTLHPGLSPDFTSSEKRFRDTNDTIPNPEDLNGLKRRPKAYEPPSGHISLIILTPLFFIAV GVALAIVTEISSRRGGFVVSTSPIQIFGTVSVQFLVSIIPVLIIFPAALLFREQDWLVRMYQPYVKLNQGGASAE ETLLLDYLYQGPFFGLFSSLHYKHRIVFLSGLAACLTFAFQPLASAIGQIRQTPQTDRQDVISTEQIGLASNINS LDGFSAAAGYIEAAAFHGLGDPPFVFNNWTTAEFIFPTEKKLNETLTINTTAVSTQPHCANSIEDVVPVPIPETT SFSFSSLSIGRCTPTINVTFDAAAGNQQSGVVDVSCPDASQGIEKRPVMFWFLNTRTDVNPPKREVKTVFCAPTI IPFTVTATAHLLDGRLDSCAKSGDFDHDNNVTGPPNNGEAFNALFFNTSSENTFVQERAKSIAARVSNAIFHLAI LEPGGIQQAFDRPNRLLDLTAKIYTQHLSLSGKSIYFTKSQSTIPGERTSIVPRLWIDPLPSRILSICLVLVGLA GLIVHIINYRQRRRLLLTTPPGTIASITALTVRSGFGNLLLPYDNTKELDKKLKGIRFRLDKRTGAIVADEVEEG IPGIDLGRNEAFRVLLGHREDPFGQHGSSSQAAFQTAVGYPPWVTKTKRPSVY* |
| Coding | >AgabiH97|096240 ATGGCAGATTCGCCAAGGCGTGTGCTGTCGGACTCTAGTGAATCAACTTTACATCCGGGCTTGTCACCCGACTTC ACTTCCTCTGAAAAGCGTTTCCGTGATACCAATGACACCATACCCAATCCTGAAGACTTGAATGGCCTCAAACGT CGCCCGAAAGCATATGAACCGCCCTCCGGACATATTTCCCTCATTATCCTTACGCCACTCTTCTTCATCGCGGTG GGTGTCGCGTTGGCAATTGTAACAGAAATCTCAAGTAGACGAGGAGGTTTTGTAGTTTCAACATCGCCAATACAA ATCTTTGGGACCGTGTCCGTGCAATTCCTTGTATCTATCATCCCAGTATTGATCATCTTTCCGGCTGCGCTCCTG TTTCGGGAACAAGACTGGTTGGTCCGCATGTACCAGCCGTATGTCAAACTCAACCAAGGTGGTGCTTCGGCTGAA GAGACATTGCTGCTCGACTATCTCTACCAAGGCCCCTTCTTTGGACTATTTTCCTCTCTCCATTATAAGCACAGG ATCGTTTTCTTGTCAGGACTCGCAGCCTGTCTCACGTTCGCTTTTCAACCACTCGCGAGCGCTATCGGTCAAATA AGACAAACGCCACAGACGGACAGGCAGGATGTCATCAGCACGGAACAAATAGGCCTGGCAAGCAATATCAATAGT CTAGACGGATTTTCTGCTGCCGCGGGTTATATCGAAGCAGCCGCTTTCCATGGGTTGGGAGATCCCCCTTTTGTT TTCAATAACTGGACTACCGCAGAATTCATTTTTCCTACGGAAAAGAAACTGAACGAAACTCTGACTATCAATACG ACAGCGGTTTCTACTCAGCCTCATTGTGCCAATTCCATTGAAGACGTTGTGCCAGTTCCGATCCCAGAAACCACG AGTTTCAGCTTCAGTTCGTTATCCATCGGACGGTGTACACCCACCATTAATGTGACGTTCGACGCGGCTGCGGGT AATCAACAATCTGGCGTGGTCGATGTAAGTTGTCCTGACGCTTCACAAGGTATTGAAAAACGACCTGTCATGTTT TGGTTTCTCAACACCCGGACGGACGTAAACCCGCCGAAACGGGAAGTCAAGACTGTCTTCTGTGCTCCCACCATC ATTCCTTTTACTGTAACAGCAACTGCGCATCTGCTGGATGGAAGACTTGACAGTTGTGCTAAGTCTGGTGACTTC GATCATGACAACAACGTGACCGGCCCACCTAATAACGGGGAAGCATTCAATGCTTTATTCTTTAATACTTCTTCT GAGAACACCTTCGTTCAAGAAAGGGCAAAATCGATTGCTGCAAGAGTTTCAAATGCTATCTTCCACCTCGCTATC CTAGAACCTGGAGGAATACAACAAGCGTTTGACCGTCCCAATAGATTGTTGGATTTGACGGCGAAAATCTACACT CAGCACCTAAGTCTTTCCGGAAAATCAATCTATTTCACGAAAAGCCAATCTACAATTCCCGGTGAGAGAACATCT ATTGTACCTAGGCTTTGGATCGATCCTCTTCCAAGTCGCATTCTCTCTATCTGTCTTGTTCTGGTTGGACTTGCT GGGTTAATCGTTCATATAATCAATTATCGTCAACGAAGACGATTACTCCTCACCACTCCCCCCGGTACCATTGCC TCAATCACAGCTTTGACTGTCCGATCCGGTTTTGGCAATCTGTTACTGCCTTACGATAATACCAAAGAACTGGAT AAGAAGTTAAAAGGTATACGATTTCGGCTGGACAAGCGGACAGGGGCTATAGTTGCGGATGAAGTAGAGGAAGGG ATTCCAGGAATAGATTTAGGTCGAAATGAAGCCTTCCGTGTGCTGTTAGGACACCGCGAGGATCCATTTGGTCAA CATGGGTCTTCCTCTCAAGCGGCTTTTCAAACGGCGGTTGGATATCCGCCATGGGTGACAAAGACCAAACGCCCT AGCGTTTATTAG |
| Transcript | >AgabiH97|096240 ATGGCAGATTCGCCAAGGCGTGTGCTGTCGGACTCTAGTGAATCAACTTTACATCCGGGCTTGTCACCCGACTTC ACTTCCTCTGAAAAGCGTTTCCGTGATACCAATGACACCATACCCAATCCTGAAGACTTGAATGGCCTCAAACGT CGCCCGAAAGCATATGAACCGCCCTCCGGACATATTTCCCTCATTATCCTTACGCCACTCTTCTTCATCGCGGTG GGTGTCGCGTTGGCAATTGTAACAGAAATCTCAAGTAGACGAGGAGGTTTTGTAGTTTCAACATCGCCAATACAA ATCTTTGGGACCGTGTCCGTGCAATTCCTTGTATCTATCATCCCAGTATTGATCATCTTTCCGGCTGCGCTCCTG TTTCGGGAACAAGACTGGTTGGTCCGCATGTACCAGCCGTATGTCAAACTCAACCAAGGTGGTGCTTCGGCTGAA GAGACATTGCTGCTCGACTATCTCTACCAAGGCCCCTTCTTTGGACTATTTTCCTCTCTCCATTATAAGCACAGG ATCGTTTTCTTGTCAGGACTCGCAGCCTGTCTCACGTTCGCTTTTCAACCACTCGCGAGCGCTATCGGTCAAATA AGACAAACGCCACAGACGGACAGGCAGGATGTCATCAGCACGGAACAAATAGGCCTGGCAAGCAATATCAATAGT CTAGACGGATTTTCTGCTGCCGCGGGTTATATCGAAGCAGCCGCTTTCCATGGGTTGGGAGATCCCCCTTTTGTT TTCAATAACTGGACTACCGCAGAATTCATTTTTCCTACGGAAAAGAAACTGAACGAAACTCTGACTATCAATACG ACAGCGGTTTCTACTCAGCCTCATTGTGCCAATTCCATTGAAGACGTTGTGCCAGTTCCGATCCCAGAAACCACG AGTTTCAGCTTCAGTTCGTTATCCATCGGACGGTGTACACCCACCATTAATGTGACGTTCGACGCGGCTGCGGGT AATCAACAATCTGGCGTGGTCGATGTAAGTTGTCCTGACGCTTCACAAGGTATTGAAAAACGACCTGTCATGTTT TGGTTTCTCAACACCCGGACGGACGTAAACCCGCCGAAACGGGAAGTCAAGACTGTCTTCTGTGCTCCCACCATC ATTCCTTTTACTGTAACAGCAACTGCGCATCTGCTGGATGGAAGACTTGACAGTTGTGCTAAGTCTGGTGACTTC GATCATGACAACAACGTGACCGGCCCACCTAATAACGGGGAAGCATTCAATGCTTTATTCTTTAATACTTCTTCT GAGAACACCTTCGTTCAAGAAAGGGCAAAATCGATTGCTGCAAGAGTTTCAAATGCTATCTTCCACCTCGCTATC CTAGAACCTGGAGGAATACAACAAGCGTTTGACCGTCCCAATAGATTGTTGGATTTGACGGCGAAAATCTACACT CAGCACCTAAGTCTTTCCGGAAAATCAATCTATTTCACGAAAAGCCAATCTACAATTCCCGGTGAGAGAACATCT ATTGTACCTAGGCTTTGGATCGATCCTCTTCCAAGTCGCATTCTCTCTATCTGTCTTGTTCTGGTTGGACTTGCT GGGTTAATCGTTCATATAATCAATTATCGTCAACGAAGACGATTACTCCTCACCACTCCCCCCGGTACCATTGCC TCAATCACAGCTTTGACTGTCCGATCCGGTTTTGGCAATCTGTTACTGCCTTACGATAATACCAAAGAACTGGAT AAGAAGTTAAAAGGTATACGATTTCGGCTGGACAAGCGGACAGGGGCTATAGTTGCGGATGAAGTAGAGGAAGGG ATTCCAGGAATAGATTTAGGTCGAAATGAAGCCTTCCGTGTGCTGTTAGGACACCGCGAGGATCCATTTGGTCAA CATGGGTCTTCCTCTCAAGCGGCTTTTCAAACGGCGGTTGGATATCCGCCATGGGTGACAAAGACCAAACGCCCT AGCGTTTATTAG |
| Gene | >AgabiH97|096240 ATGGCAGATTCGCCAAGGCGTGTGCTGTCGGACTCTAGTGAATCAACTTTACATCCGGGCTTGTCACCCGACTTC ACTTCCTCTGAAAAGCGTTTCCGTGATACCAATGACACCATACCCAATCCTGAAGACTTGAATGGCCTCAAACGT CGCCCGAAAGCATATGTATGTTCGTCCATACATCAATTAACATGTCATTGATTTCGTTGCGTGTCAGGAACCGCC CTCCGGACATATTTCCCTCATTATCCTTACGCCACTCTTCTTCATCGCGGTGGGTGTCGCGTTGGCAATTGTAAC AGAAATCTCAAGTAGACGAGGAGGTAAGATTTCTATTCAAAATCTTGACCATCCAACACTGACCGTACTTGACCA ACAACAGGTTTTGTAGTTTCAACATCGCCAATACAAATCTTTGGGACCGTGTCCGTGCAATTCCTTGTAGTACGT TTCCGGGTTTTGTTCATCGTCTATAACCTAATTCATCCAAATCTAGTCTATCATCCCAGTATTGTGAGTCTACCT TTTCTGGTGCGCGAAATCTTCGGAACAACGAAGCGTTTCACCCGGCCTTTTATGTCACTACTCTTACGGAGAGCA TACGGGCCTGGAGATATCACCAGTACGTAAATTCACACCTAATTTCTTCAAATTCAGGATCATCTTTCCGGCTGC GCTCCTGTTTCGGGAACAAGACTGGTTGGTCCGCATGTACCAGGTATGATGAAGTTCTATCATATACCCATCGGT GCTAACGTTCATATCTTGGCAGCCGTATGTCAAACTCAACCAAGGTGGTGCTTCGGCTGAAGAGACATTGCTGCT CGACTATGTAAGTTATTCTAACATGATCCACCTAATGCGCTCTGATACCAAATGAGTTAAGCTCTACCAAGGGTG AGGACAATACCTATTAATCGACAACTTATTGTTGACAGTAAAACCAGCCCCTTCTTTGGACTATTTTCCTCTCTC CATTATAAGCACAGGATCGTTTTCTTGTCAGGACTCGCAGCCTGTCTCACGTTCGCTTTTCAACCACTCGGTGAG AGAATGATTTACATATGGTTTTTTTTTTTTGGCTAATGCTCGGCTTCAGCGAGCGCTATCGGTCAAATAAGACAA ACGCCACAGACGGACAGTAAGCCCACCTGAATCATTTCCATTGATTCGCATTTCAGCTTTTAATCTAGGGCAGGA TGTCATCAGCACGGAACAAATAGGCCTGGCAAGCAATATCAATAGTCTAGACGGATTTTCTGCTGCCGCGGGTTA TATCGAAGCAGCCGCTTTCCATGGGTTGGGAGATCCCCCTTTTGTTTTCAATAACTGGACTACCGCAGAATTCAT TGTAAGTAATTGCTGTCGCATTACTCGATTACCATCTTACACGTTAACGTTCATAGTTTCCTACGGAAAAGAAAC TGAACGAAACTCTGACTATCAATACGACAGCGGTTTCTACTCAGCCTCATTGTGCCAATTCCATTGAAGACGTTG TGCCAGTTCCGATCCCAGAAACCACGAGTTTCAGCTTCAGTTCGTTATCCATCGGACGGTGTACACCCACCATTA ATGTGACGTTCGACGCGGCTGTGAGTTTTTGCACATCGAGAAACTTTTTGCTCTAGCTGACGGACGATTATAGGC GGGTAATCAACAATCTGGCGTGGTCGATGTAAGTTGTCCTGACGCTTCACAAGGTATTGAAAAACGACCTGTCAT GTTTTGGTGCGCTCTCTTTTTTTCTCATAAAATTTCCATTATTTAGAGTCAAAGCTCAGGTTTCTCAACACCCGG ACGGACGTAAACCCGCCGAAACGGGAAGTCAAGACTGTCTTCTGTGCTCCCACCATCATTCCTTTTACTGTAACA GCAACTGCGCATCTGCTGGATGGAAGACTTGACAGTTGTGCTAAGTCTGGTGACTTCGATCATGACAACAACGTG ACCGGCCCACCTAATAACGGGGAAGCATTCAATGCGTGAGAATATTTTACCTCTAATTTTATTTCATGGATTTAT CTCTGCATTCAGTTTATTCTTTAATACTTCTTCTGAGAACACCTTCGTTCAAGAAAGGGCAAAATCGATTGCTGC AAGAGTTTCAAATGCTATCTTCCACCTCGCTATCCTAGAACCTGGAGGAATACAACAAGCGTTTGACCGTCCCAA TAGATTGTTGGATTTGACGGCGAAAATCTACGTCAGTGGACACGCTTCAACTTGCTCAGCGTCACTCACCCTATC CTTGTCAGACTCAGCACCTAAGTCTTTCCGGAAAATCAATCTATTTCACGAAAAGCCAATCTACAATTCCCGGTG AGAGAACATCTATTGTACCTAGGCTTTGGATCGAGTGAGTAATTCTTTTTTTTTACACTAATATCAAACCTAAAT GCGTCTTACTATCATACAGTCCTCTTCCAAGTCGCATTCTCTCTATCTGTCTTGTTCTGGTTGGACTTGCTGGGT TAATCGTTCATATAATCAATTATCGTCAACGAAGACGATTACTCCTCACCACTCCCCCCGGTACCATTGCCTCAA TCACAGCTTTGACTGTCCGATCCGGTTTTGGCAATCTGTTACTGCCTTACGATAATACCAAAGAACTGGATAAGA AGTTAAAAGGTATACGATTTCGGCTGGACAAGCGGACAGGGGCTATAGTTGCGGATGAAGTAGAGGAAGGGATTC CAGGAATAGATTTAGGTCGAAATGAAGCCTTCCGTGTGCTGTTAGGACACCGCGAGGATCCATTTGGTCAACATG GGTCTTCCTCTCAAGCGGCTTTTCAAACGGCGGTTGGATATCCGCCATGGGTGACAAAGACCAAACGCCCTAGCG TTTATTAG |