Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|095970
Gene name
Locationscaffold_6:1973772..1975881
Strand-
Gene length (bp)2109
Transcript length (bp)1050
Coding sequence length (bp)1050
Protein length (aa) 350

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 1.6E-15 177 264

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.0869 0.118 0.1222 0.6518 0.0672 0.0007 0.0892 0.3933 0.4083 0.003

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 62 84 22
3 99 121 22
4 133 155 22
5 170 192 22
6 213 235 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|095970
MSTTVATAPSPSATFFPPPNVQLSYGPMLIGVFVNMILYGILLSQTFSYYRLYKSDALWIKCLVLYLFIVETANT
GIDMVMMYQPLILEYGHKLDAFPVMFAAEPITIVAISMPIQLFFAWRIFRLTKQSIIAIVISILSLVSFAGGLWT
TIKIIIIKSFSRKPELHWSALVWFLAATVADVLITVTLVINLSRRKTGFSATDDAISKIIRMTVQTGMLTALFAI
GDVVFFMTLGKTALNFIWDLALTKIYANCLMSTLNARASLKEMTSGHSNQRHFSSTPGSSRRLNTTTDPMSPLRV
QSHMFELGNVSYEKSSRSQYDDPEYGITVTRVVETIPDQESRKPQAVAL*
Coding >AgabiH97|095970
ATGTCTACTACTGTGGCCACGGCTCCTTCACCATCCGCAACGTTCTTTCCTCCACCCAACGTGCAATTATCGTAT
GGACCGATGCTGATTGGAGTCTTCGTGAATATGATATTATATGGAATTCTATTATCTCAGACTTTTTCGTACTAC
CGGCTTTACAAGAGTGACGCACTTTGGATCAAGTGTTTGGTTCTCTATCTCTTTATCGTTGAGACGGCGAATACG
GGGATAGATATGGTGATGATGTATCAGCCTCTCATATTGGAGTATGGACATAAACTAGACGCGTTCCCAGTCATG
TTCGCTGCTGAACCGATAACCATTGTTGCGATTTCTATGCCTATTCAGCTCTTTTTTGCCTGGAGAATTTTTCGT
CTCACGAAACAGTCAATCATTGCTATCGTCATTTCGATACTATCACTCGTTTCTTTTGCTGGTGGTCTATGGACA
ACTATTAAGATCATTATCATCAAATCATTCAGCCGTAAACCTGAACTTCACTGGTCTGCTCTTGTATGGTTTCTT
GCAGCAACCGTCGCGGATGTTCTCATCACTGTAACACTTGTGATAAACTTGTCAAGACGTAAAACAGGATTCTCC
GCGACAGACGACGCTATTTCGAAAATTATTCGAATGACGGTCCAAACTGGCATGCTAACTGCCCTCTTCGCAATT
GGAGATGTTGTCTTCTTCATGACTCTTGGGAAAACCGCTTTGAATTTCATTTGGGACCTAGCTCTGACTAAGATT
TACGCGAATTGCCTAATGTCTACTTTGAATGCCCGCGCTTCTCTGAAGGAAATGACAAGCGGTCATTCAAATCAG
CGCCATTTCTCAAGTACACCTGGAAGCAGTAGACGGCTTAACACAACCACAGATCCCATGTCACCACTCCGCGTT
CAATCACATATGTTTGAGCTTGGCAATGTATCATACGAAAAATCATCGCGTTCGCAGTATGATGACCCTGAGTAT
GGCATAACTGTGACAAGGGTCGTGGAGACAATCCCAGATCAAGAGTCGAGGAAACCACAGGCTGTCGCTCTTTAG
Transcript >AgabiH97|095970
ATGTCTACTACTGTGGCCACGGCTCCTTCACCATCCGCAACGTTCTTTCCTCCACCCAACGTGCAATTATCGTAT
GGACCGATGCTGATTGGAGTCTTCGTGAATATGATATTATATGGAATTCTATTATCTCAGACTTTTTCGTACTAC
CGGCTTTACAAGAGTGACGCACTTTGGATCAAGTGTTTGGTTCTCTATCTCTTTATCGTTGAGACGGCGAATACG
GGGATAGATATGGTGATGATGTATCAGCCTCTCATATTGGAGTATGGACATAAACTAGACGCGTTCCCAGTCATG
TTCGCTGCTGAACCGATAACCATTGTTGCGATTTCTATGCCTATTCAGCTCTTTTTTGCCTGGAGAATTTTTCGT
CTCACGAAACAGTCAATCATTGCTATCGTCATTTCGATACTATCACTCGTTTCTTTTGCTGGTGGTCTATGGACA
ACTATTAAGATCATTATCATCAAATCATTCAGCCGTAAACCTGAACTTCACTGGTCTGCTCTTGTATGGTTTCTT
GCAGCAACCGTCGCGGATGTTCTCATCACTGTAACACTTGTGATAAACTTGTCAAGACGTAAAACAGGATTCTCC
GCGACAGACGACGCTATTTCGAAAATTATTCGAATGACGGTCCAAACTGGCATGCTAACTGCCCTCTTCGCAATT
GGAGATGTTGTCTTCTTCATGACTCTTGGGAAAACCGCTTTGAATTTCATTTGGGACCTAGCTCTGACTAAGATT
TACGCGAATTGCCTAATGTCTACTTTGAATGCCCGCGCTTCTCTGAAGGAAATGACAAGCGGTCATTCAAATCAG
CGCCATTTCTCAAGTACACCTGGAAGCAGTAGACGGCTTAACACAACCACAGATCCCATGTCACCACTCCGCGTT
CAATCACATATGTTTGAGCTTGGCAATGTATCATACGAAAAATCATCGCGTTCGCAGTATGATGACCCTGAGTAT
GGCATAACTGTGACAAGGGTCGTGGAGACAATCCCAGATCAAGAGTCGAGGAAACCACAGGCTGTCGCTCTTTAG
Gene >AgabiH97|095970
ATGTCTACTACTGTGGCCACGGCTCCTTCACCATCCGCAACGTTCTTTCCTCCACCCAACGTGCAATTATCGTAA
GTTTTATGTCGTATGACTTACTTATGTCTAACATAGGTTCAGGTATGGACCGATGCTGATTGGAGTCTTCGTGAA
TATGATATTATATGGAGTATGTGCCATGACCTCCGAGGACGATGACAAAATTGACCCTTGTGCCTAGATTCTATT
ATCTCAGGTACCTTGGCGAATCTTATTCTGGGTATTCAGCGCTCATGACGATCCGCTTCGCCACAGACTTTTTCG
TACTACCGGCTTTACAAGAGGTATGATACTTCTCTACTCTTGTTATCGAGCTGACATTTGACTTTAAACAGTGAC
GCACTTTGGATCAAGTGTTTGGTGAGGCTTCAAGCACACACCCGAGGATCATCCCGACTCAACGTACTATTAGGT
TCTCTATCTCTTTATCGTTGAGACGGCGAATACGGGGATAGATATGGTGATGATGTATCAGCCTCTCATATTGGA
GTATGGTCCGTCATTTCACACTTTCTGGTGTATAGGCATTTAGACTCGCAACAGGACATAAACTAGACGCGTTCC
CAGTCAGTAAGTGCTTGAAAATTATATCCCGTTGGCTAATAAGATTAATTATCGTCCGATTCAGTGTTCGCTGCT
GGTGCGCAAGCTCCATTTCCTTTTTTTCAGCATTTCATGTCTCTATGTTTCCATTGTACCTCTAGAACCGATAAC
CATTGTAAGCTAAGCCCTCTCATGCCCCGTGTGCTGAGGTCCTGACTAGTTATCGAAGGTTGCGATTTCTATGCC
TATTCAGCTCTTTTTTGCCTGGAGAATTTTTCGTCTCACGAAACAGTCAATCATTGCTATCGTCATTTCGATACT
ATCACTCGTTTCTTTTGGTATGTGCCTTGAAGTCTTTCCACCTGCAAAACGCTGACCTTATTCTTACAAGCTGGT
GGTCTATGGACAACTATTAAGATCATTATCATCAAATCATTCAGCCGTAAACCTGAACTTCACTGGTCTGCTCTT
GTATGGTTTCTTGCAGCAACCGTCGCGGATGTTCTCATCACTGTAACACTTGTGATAAACTTGGTCAGTACTCCC
CACGCCAAGATCCTATCTATTCCCCTCAAATTTCCCACTCCCGCAAGCCACCGTACTGACTATGATTCGCAGTCA
AGACGTAAAACAGGATTCTCCGCGACAGACGACGCTATTTCGAAAATTATTCGAAGTGGGTTTTTGACCACGTTG
ACTCGCAACTGTCACTTATCATTTATTTAAGTGACGGTCCAAACTGGCATGCTAACGTAGGTTTTATGGCATTCA
ACACTGAAACCCCAGGGTAACGTTCCTGAATCAGTGCCCTCTTCGCAATTGGAGATGTTGTCTTCTTCATGAGTG
AGATTTATTCTTTTGTGTGGAAATACGGAGCGCTAATTGGCCCCATCTAGCTCTTGGGGTACGTAAATCTATGGC
GGTTGTAGTAACCGCGTGTTCTGAAGTTCATCTCGTTGTTGAACCATAGAAAACCGCTTTGTGCGTCAACGCGTT
TTACGTCTCTGCGCATGCCAGTGTGAACTAATTCCCGATGCAGGAATTTCATTTGGGACCTAGCTCTGACTAAGA
TTTACGCGAATTGCCTAATGTCTACTTTGAATGCCCGCGCTTCTCTGAAGGAAATGACAAGCGGTCATTCAAATC
AGCGCCATTTCTCAAGTACACCTGGAAGCAGTAGACGGCTTGTAAGCTATCATATAGTTTTTCACGCTGTCGTCC
GCTTCAACAGTTTTTTTTAGAACACAACCACAGATCCCATGTCACCAGTAAGTTCATTCAGGTGGAAGGCCATTT
TTACTGAAGTTACCCTTTAGCTCCGCGTTCAATCACATATGTTTGAGCTTGGCAATGTATCATACGAAAAATCAT
CGCGTTCGCAGTATGATGACCCTGAGTATGGCATAACTGTGACAAGGGTACGTTTTGGGTTTATTTCCTCCCGTC
AGTCCTTGAAACCAATATATCAAATAGGTCGTGGAGACAATCCCAGATCAAGAGTCGAGGAAACCACAGGCTGTC
GCTCTTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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