Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|095960
Gene name
Locationscaffold_6:1969638..1970922
Strand-
Gene length (bp)1284
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 6.0E-18 75 160

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.0684 0.1222 0.1423 0.678 0.0825 0.0023 0.0597 0.3426 0.3789 0.029

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 31 53 22
2 68 90 22
3 111 133 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|095960
MYRSDHDPVSTPVQLFIAWRIIIISGKRYFAFIIWVFALISTGGAIWLAHTVVDVKRFARKPDLHWPALTWLLAS
MIADVIITFSLVHSLAKRRTGIVQTDDIINKIIRMTIQTGLVTAIFAILDVICFLVIPNSTLNFVWDFALSKLYA
NALMSTLNARGGGFGRSQGIPTNVLFTEGSLSREASGMPGFQLSLTGRSKSLDMSSSRTGSRRTADDIEVGVSSV
KEVREI*
Coding >AgabiH97|095960
ATGTATAGATCCGATCATGACCCGGTTTCGACACCAGTGCAACTTTTCATCGCGTGGAGAATCATTATCATTAGT
GGAAAGCGGTATTTCGCTTTTATAATTTGGGTGTTTGCGTTGATTTCGACTGGTGGAGCTATATGGCTGGCGCAT
ACGGTCGTCGATGTCAAGAGATTTGCCAGGAAACCTGACTTACATTGGCCAGCTTTGACTTGGTTACTCGCTTCG
ATGATTGCGGATGTGATAATTACTTTTTCCTTGGTCCATAGCCTGGCGAAAAGGAGGACAGGAATCGTTCAAACT
GATGATATAATAAACAAGATTATCAGAATGACGATTCAAACAGGTCTAGTGACGGCTATATTCGCGATCTTGGAT
GTGATATGTTTCCTTGTAATACCTAACTCAACCCTGAATTTCGTTTGGGATTTTGCTTTATCTAAATTATATGCC
AACGCGTTAATGTCGACATTGAATGCGCGAGGGGGCGGCTTTGGGAGATCACAAGGAATACCGACGAATGTGTTG
TTTACGGAGGGATCGCTCAGTAGAGAAGCGAGTGGAATGCCTGGGTTCCAGCTTTCGCTCACAGGGAGGTCGAAA
TCATTAGACATGTCATCTTCGAGGACTGGCAGTCGACGGACGGCCGACGACATCGAGGTTGGAGTTTCGTCTGTA
AAAGAGGTCAGAGAGATATGA
Transcript >AgabiH97|095960
ATGTATAGATCCGATCATGACCCGGTTTCGACACCAGTGCAACTTTTCATCGCGTGGAGAATCATTATCATTAGT
GGAAAGCGGTATTTCGCTTTTATAATTTGGGTGTTTGCGTTGATTTCGACTGGTGGAGCTATATGGCTGGCGCAT
ACGGTCGTCGATGTCAAGAGATTTGCCAGGAAACCTGACTTACATTGGCCAGCTTTGACTTGGTTACTCGCTTCG
ATGATTGCGGATGTGATAATTACTTTTTCCTTGGTCCATAGCCTGGCGAAAAGGAGGACAGGAATCGTTCAAACT
GATGATATAATAAACAAGATTATCAGAATGACGATTCAAACAGGTCTAGTGACGGCTATATTCGCGATCTTGGAT
GTGATATGTTTCCTTGTAATACCTAACTCAACCCTGAATTTCGTTTGGGATTTTGCTTTATCTAAATTATATGCC
AACGCGTTAATGTCGACATTGAATGCGCGAGGGGGCGGCTTTGGGAGATCACAAGGAATACCGACGAATGTGTTG
TTTACGGAGGGATCGCTCAGTAGAGAAGCGAGTGGAATGCCTGGGTTCCAGCTTTCGCTCACAGGGAGGTCGAAA
TCATTAGACATGTCATCTTCGAGGACTGGCAGTCGACGGACGGCCGACGACATCGAGGTTGGAGTTTCGTCTGTA
AAAGAGGTCAGAGAGATATGA
Gene >AgabiH97|095960
ATGTATAGATCCGATCATGACCGTACGTACTTTCTTAAGCTCGGTTTTCCCTCATCATCCGTTTCCCGACCCTCT
CCAAGTTCCGATGGTCGGTTCCTTCAGTCCCAAAATAGAAACTGGACCCTTGATTTCGACCCAATCTAAAGATTA
CGTGCCAGACGCTAATGATACGATATTTTACTTCGGTAGATAGCGGTTTCGACACCAGTGCAACTTTTCATCGCG
TGGAGAATCATTATCATTAGTGGAAAGCGGTATTTCGCTTTTATAATTTGGGTGTTTGCGTTGATTTCGACTGGT
ATGTGGTTCCATATATATGTGATGACAATCAGTAACTTTCCGTTTCACGCTAGGTGGAGCTATATGGCTGGCGCA
TACGGTCGTCGATGTCAAGAGATTTGCCAGGAAACCTGACTTACATTGGCCAGCTTTGACTTGGTTACTCGCTTC
GATGATTGCGGATGTGATAATTACTTTTTCCTTGGTCCATAGCCTGGTCGGTTTATTTCATCCAATGCCCTGTTT
TGATTGTTTTTACTAATGTGGTAACTGAACACTGGTTTTATAGGCGAAAAGGAGGACAGGAATCGTTCAAACTGA
TGATATAATAAACAAGGTCTGCGAAATTAGTCGTTTAAACGTTTGGGCATTTGTTGAATGAGGGTTGCATTGACA
TAGATTATCAGAATGACGATTCAAACAGGTCTAGTGACGGCTATATTCGCGATCTTGGATGTGATATGTTTCCTT
GTAATACCTGTGAGTGCCTACCTTATACAAACGAAACTTCCGACTCATCAGGCCCGCTACTTAGAACTCAACCCT
GTAAGTGCCAGTGAACTCTTTTTATTAGAAGCTTGCCTGATTTTATGAAATAAGGAATTTCGTTTGGGATTTTGC
TTTATCTAAATTATATGCCAACGCGTTAATGTCGACATTGAATGCGCGAGGGGGCGGCTTTGGGAGATCACAAGG
AATACCGACGAATGTGTTGTTTACGGAGGGATCGCTCAGTAGAGAAGCGAGTGGAATGCCTGGGGTGAGCCTGTC
AGTTTTCGCGACGGATTGAACCATCGTCTGATTGTCCGTTGTTCAGTTCCAGCTTTCGCTCACAGGGAGGTCGAA
AGTGAGTTCATTCAATCTTGAGAAAACTTCATGATAGCTCATTCTATACATTCACACTCGTAGTCATTAGACATG
TCATCTTCGAGGACTGGCAGTCGACGGACGGCCGACGACATCGAGGTTGGAGTTTCGTCTGTAAAAGAGGTCAGA
GAGATATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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