Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|095800
Gene name
Locationscaffold_6:1930369..1931881
Strand-
Gene length (bp)1512
Transcript length (bp)1512
Coding sequence length (bp)1512
Protein length (aa) 504

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 2.8E-06 55 115

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear export signal 0.62 0.5783 0.0944 0.0668 0.2252 0.0064 0.068 0.1526 0.1012 0.007

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID1
Orthogroup12839
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|095800
Agaricus bisporus var bisporus H97 AgabiH97|095800 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|095800
MMLSNLSRTPLSAVTHDQSTEMIIPSSKYSSPSETVRIRPLERLHILNFTQSKTRSLPSELLSIIFQYACPTPPD
IFGEKRIPTMAPFHLILRLVSTLWYDISQSTPQLWASIFLPKLRAENVDIRARYLKLCLDNSGNIPLTVFLGFEE
ESWNIGWFISPIVDAALERSAHRIQALRILRPPGDWLEKLIPKMCQLATIHIDNPRPNLPWSPDQRVERLLLPRS
SNMNRIYIRCPCLFDLRSAPTAQSITHVEIFELPVDFVMEFLSRCPNLVAFHCRYPIAPSQVKNPHTMLTSPFVL
RHLSTFTWSTTRILDRISEWDITLFEHIHFPALTRFNWWPGLCFYVDDTALALPIFRFPTSVTTLQFGGVGYRPV
ETFYLIHFFPFTGVTQLRLLHCEYRFVDQVLSFLSRGTERSNTLFPQLTSIMIDYRVAGVVTPRCERFYPESGKK
LVQMLRSRIGLIDEFTLIVEIARFTQHWNDEVWEAVRQVKRDGINLTSKMDVL*
Coding >AgabiH97|095800
ATGATGCTATCTAATCTATCTCGTACTCCTTTGAGTGCCGTCACTCATGATCAGTCTACTGAGATGATCATACCA
TCGAGCAAGTACTCTTCTCCTTCTGAGACAGTCAGAATTCGCCCTTTAGAGAGGCTCCATATTCTCAATTTCACT
CAATCTAAGACTCGATCGTTGCCCTCCGAATTGTTGTCCATCATCTTCCAGTATGCCTGCCCGACTCCTCCCGAT
ATTTTCGGCGAGAAACGCATCCCGACAATGGCACCCTTCCATCTCATCTTGCGCTTGGTATCGACGTTATGGTAC
GACATATCACAGTCAACACCTCAGCTGTGGGCCTCCATCTTCTTGCCGAAATTACGTGCAGAGAATGTTGATATC
AGGGCACGATATCTAAAGCTTTGTCTAGATAATTCCGGCAACATACCCCTCACCGTATTTCTTGGATTTGAAGAA
GAGTCATGGAACATCGGCTGGTTTATTTCTCCCATAGTCGATGCCGCTTTGGAGCGTAGTGCGCATCGCATCCAA
GCTCTTCGAATACTTCGACCTCCTGGTGACTGGTTGGAGAAACTAATTCCAAAAATGTGCCAACTTGCTACAATA
CACATTGACAATCCTCGACCAAATCTACCCTGGTCGCCCGATCAACGTGTGGAGCGCCTTCTCCTTCCGAGGAGC
AGCAATATGAATCGAATTTACATTCGATGCCCTTGCCTTTTTGACCTCCGATCTGCGCCTACAGCACAATCGATT
ACCCACGTGGAGATATTTGAACTGCCTGTCGACTTCGTCATGGAATTTCTTTCGAGATGCCCTAATTTGGTTGCC
TTCCACTGTCGATATCCAATCGCTCCGTCCCAAGTCAAAAATCCTCATACTATGCTTACATCTCCCTTCGTACTC
CGCCATCTTTCTACGTTTACCTGGTCCACCACTCGAATCCTCGACCGCATTTCCGAGTGGGATATTACACTATTT
GAGCACATTCATTTTCCAGCCCTAACGAGGTTCAATTGGTGGCCTGGTCTGTGTTTCTATGTAGATGACACTGCA
CTTGCGTTGCCGATATTCCGATTTCCGACATCGGTCACTACTCTCCAATTTGGTGGAGTCGGTTACCGCCCAGTA
GAAACCTTTTACTTGATTCATTTTTTCCCGTTCACTGGTGTCACTCAACTTCGGCTTTTACATTGTGAATATCGT
TTTGTGGATCAAGTCTTGTCTTTCCTCTCAAGAGGGACAGAGCGAAGTAATACCTTATTCCCTCAACTCACGTCC
ATCATGATCGATTACCGGGTGGCGGGGGTGGTGACACCACGGTGTGAGAGGTTTTATCCAGAAAGCGGGAAGAAA
CTAGTGCAGATGTTACGAAGCAGGATTGGTTTGATAGACGAATTTACACTAATAGTGGAAATAGCTCGCTTCACA
CAACACTGGAATGATGAAGTATGGGAAGCTGTAAGGCAAGTCAAACGAGATGGAATCAATCTAACATCGAAGATG
GATGTCCTATAA
Transcript >AgabiH97|095800
ATGATGCTATCTAATCTATCTCGTACTCCTTTGAGTGCCGTCACTCATGATCAGTCTACTGAGATGATCATACCA
TCGAGCAAGTACTCTTCTCCTTCTGAGACAGTCAGAATTCGCCCTTTAGAGAGGCTCCATATTCTCAATTTCACT
CAATCTAAGACTCGATCGTTGCCCTCCGAATTGTTGTCCATCATCTTCCAGTATGCCTGCCCGACTCCTCCCGAT
ATTTTCGGCGAGAAACGCATCCCGACAATGGCACCCTTCCATCTCATCTTGCGCTTGGTATCGACGTTATGGTAC
GACATATCACAGTCAACACCTCAGCTGTGGGCCTCCATCTTCTTGCCGAAATTACGTGCAGAGAATGTTGATATC
AGGGCACGATATCTAAAGCTTTGTCTAGATAATTCCGGCAACATACCCCTCACCGTATTTCTTGGATTTGAAGAA
GAGTCATGGAACATCGGCTGGTTTATTTCTCCCATAGTCGATGCCGCTTTGGAGCGTAGTGCGCATCGCATCCAA
GCTCTTCGAATACTTCGACCTCCTGGTGACTGGTTGGAGAAACTAATTCCAAAAATGTGCCAACTTGCTACAATA
CACATTGACAATCCTCGACCAAATCTACCCTGGTCGCCCGATCAACGTGTGGAGCGCCTTCTCCTTCCGAGGAGC
AGCAATATGAATCGAATTTACATTCGATGCCCTTGCCTTTTTGACCTCCGATCTGCGCCTACAGCACAATCGATT
ACCCACGTGGAGATATTTGAACTGCCTGTCGACTTCGTCATGGAATTTCTTTCGAGATGCCCTAATTTGGTTGCC
TTCCACTGTCGATATCCAATCGCTCCGTCCCAAGTCAAAAATCCTCATACTATGCTTACATCTCCCTTCGTACTC
CGCCATCTTTCTACGTTTACCTGGTCCACCACTCGAATCCTCGACCGCATTTCCGAGTGGGATATTACACTATTT
GAGCACATTCATTTTCCAGCCCTAACGAGGTTCAATTGGTGGCCTGGTCTGTGTTTCTATGTAGATGACACTGCA
CTTGCGTTGCCGATATTCCGATTTCCGACATCGGTCACTACTCTCCAATTTGGTGGAGTCGGTTACCGCCCAGTA
GAAACCTTTTACTTGATTCATTTTTTCCCGTTCACTGGTGTCACTCAACTTCGGCTTTTACATTGTGAATATCGT
TTTGTGGATCAAGTCTTGTCTTTCCTCTCAAGAGGGACAGAGCGAAGTAATACCTTATTCCCTCAACTCACGTCC
ATCATGATCGATTACCGGGTGGCGGGGGTGGTGACACCACGGTGTGAGAGGTTTTATCCAGAAAGCGGGAAGAAA
CTAGTGCAGATGTTACGAAGCAGGATTGGTTTGATAGACGAATTTACACTAATAGTGGAAATAGCTCGCTTCACA
CAACACTGGAATGATGAAGTATGGGAAGCTGTAAGGCAAGTCAAACGAGATGGAATCAATCTAACATCGAAGATG
GATGTCCTATAA
Gene >AgabiH97|095800
ATGATGCTATCTAATCTATCTCGTACTCCTTTGAGTGCCGTCACTCATGATCAGTCTACTGAGATGATCATACCA
TCGAGCAAGTACTCTTCTCCTTCTGAGACAGTCAGAATTCGCCCTTTAGAGAGGCTCCATATTCTCAATTTCACT
CAATCTAAGACTCGATCGTTGCCCTCCGAATTGTTGTCCATCATCTTCCAGTATGCCTGCCCGACTCCTCCCGAT
ATTTTCGGCGAGAAACGCATCCCGACAATGGCACCCTTCCATCTCATCTTGCGCTTGGTATCGACGTTATGGTAC
GACATATCACAGTCAACACCTCAGCTGTGGGCCTCCATCTTCTTGCCGAAATTACGTGCAGAGAATGTTGATATC
AGGGCACGATATCTAAAGCTTTGTCTAGATAATTCCGGCAACATACCCCTCACCGTATTTCTTGGATTTGAAGAA
GAGTCATGGAACATCGGCTGGTTTATTTCTCCCATAGTCGATGCCGCTTTGGAGCGTAGTGCGCATCGCATCCAA
GCTCTTCGAATACTTCGACCTCCTGGTGACTGGTTGGAGAAACTAATTCCAAAAATGTGCCAACTTGCTACAATA
CACATTGACAATCCTCGACCAAATCTACCCTGGTCGCCCGATCAACGTGTGGAGCGCCTTCTCCTTCCGAGGAGC
AGCAATATGAATCGAATTTACATTCGATGCCCTTGCCTTTTTGACCTCCGATCTGCGCCTACAGCACAATCGATT
ACCCACGTGGAGATATTTGAACTGCCTGTCGACTTCGTCATGGAATTTCTTTCGAGATGCCCTAATTTGGTTGCC
TTCCACTGTCGATATCCAATCGCTCCGTCCCAAGTCAAAAATCCTCATACTATGCTTACATCTCCCTTCGTACTC
CGCCATCTTTCTACGTTTACCTGGTCCACCACTCGAATCCTCGACCGCATTTCCGAGTGGGATATTACACTATTT
GAGCACATTCATTTTCCAGCCCTAACGAGGTTCAATTGGTGGCCTGGTCTGTGTTTCTATGTAGATGACACTGCA
CTTGCGTTGCCGATATTCCGATTTCCGACATCGGTCACTACTCTCCAATTTGGTGGAGTCGGTTACCGCCCAGTA
GAAACCTTTTACTTGATTCATTTTTTCCCGTTCACTGGTGTCACTCAACTTCGGCTTTTACATTGTGAATATCGT
TTTGTGGATCAAGTCTTGTCTTTCCTCTCAAGAGGGACAGAGCGAAGTAATACCTTATTCCCTCAACTCACGTCC
ATCATGATCGATTACCGGGTGGCGGGGGTGGTGACACCACGGTGTGAGAGGTTTTATCCAGAAAGCGGGAAGAAA
CTAGTGCAGATGTTACGAAGCAGGATTGGTTTGATAGACGAATTTACACTAATAGTGGAAATAGCTCGCTTCACA
CAACACTGGAATGATGAAGTATGGGAAGCTGTAAGGCAAGTCAAACGAGATGGAATCAATCTAACATCGAAGATG
GATGTCCTATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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