Protein ID | AgabiH97|094790 |
Gene name | |
Location | scaffold_6:1675852..1678683 |
Strand | - |
Gene length (bp) | 2831 |
Transcript length (bp) | 2610 |
Coding sequence length (bp) | 2610 |
Protein length (aa) | 870 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 2.5E-16 | 662 | 724 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 2.8E-03 | 492 | 509 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 4.2E-01 | 515 | 534 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6ZPZ3|ZC3H4_MOUSE | Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4 PE=1 SV=2 | 486 | 534 | 3.0E-09 |
sp|Q9UPT8|ZC3H4_HUMAN | Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4 PE=1 SV=3 | 486 | 534 | 3.0E-09 |
sp|Q8N5P1|ZC3H8_HUMAN | Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens GN=ZC3H8 PE=1 SV=2 | 465 | 535 | 1.0E-07 |
sp|Q9JJ48|ZC3H8_MOUSE | Zinc finger CCCH domain-containing protein 8 OS=Mus musculus GN=Zc3h8 PE=1 SV=2 | 487 | 534 | 1.0E-07 |
sp|A6NMK7|CPS4L_HUMAN | Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3 | 486 | 535 | 6.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 24 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|094790 MATLAVPSSYTPLFPTETPHAHDSATLKFPHTRAQLAAVARQHKPADTHDSDTGTDDLGRVPSSFVAKVVSLLTD EKEDELKALLKATYSLDNQSLEESVLDLMHKHRDDVAGVPFVFLTPTRRPISRPSSRASSHSARLHPARPDTPSS APPSPLAWSHRRPHTPATSPLANGEPRSYMSPKSDYSPSSSPILAHAQATQAQAQWTASLPASPLLTSRSLNAKA SEFRPIPRPLSSASSQPGSLLRADTPSPDMWAHNSPRATSNLAIAAPLIADQSTSAPRALTPSSSLRSFVRPDED EDEGEDPDPYDPFTNNGQLPAPFHSITVSDFDNQWSVSPPEESELTHMATQPPYEYGYSPFNPNGNNDPIDDVEA NAALTDGMTPFDVLSSVFGSTLAPSELEEALAANGYDFEHAMAWLIDRGLPQQPASPTQVRMQPMGNRVTLVSRD TGGTIRGTVKGGYHNNNSNGTGRGAPPRYANGRPSQSGNRVCRYFVAGECLRADCRFSHDLERALCRFWLRGMCA KNEACEFLHHLPKDVDVANLNVAMSRANIGPPSHYGPPEMHAPVDEFPVLGYEGNVMRMNKPGGYYDPGRTRFAA AVKKPAPPKINGVQLARVMGPAADNLHHQSAIVAPRPSPRIKLHPPTLVPTLPTGDAVNQLYMNYRQRALQLGAA RNACLSRAADAWRRGDGAAAKRFSREGHDLNAKMSTEMANAASKLVRERSSLAEQAVRARDLSWSDDPGDRSARG RPCGSGLGVVLGVGRKDVGDGKLTTEERTECMLDLHGLHSNEATEVLEQFLLSLEREHFYGLAYAVVGEEKHTGT QDPSRGASRNRLATAVREWVHRWGYPWSERDGIICIDPLTHASE* |
Coding | >AgabiH97|094790 ATGGCTACCCTCGCCGTCCCTTCCTCTTACACGCCCCTCTTTCCGACAGAGACACCACACGCACACGACTCTGCC ACCCTCAAGTTTCCCCACACAAGAGCTCAGCTCGCCGCCGTCGCGCGCCAACACAAACCAGCCGACACTCATGAT TCAGACACCGGCACAGACGACCTCGGCCGCGTTCCGTCTTCCTTTGTCGCAAAGGTCGTTTCTCTGCTCACAGAC GAAAAGGAAGACGAGCTCAAGGCGCTGCTCAAGGCCACCTACAGTCTAGACAATCAATCACTCGAAGAGTCTGTG CTGGACCTCATGCACAAGCACCGCGACGACGTCGCTGGCGTCCCATTTGTATTTTTGACGCCAACGCGTCGTCCC ATTTCCCGTCCTTCTTCCCGGGCGTCATCTCACTCGGCCCGTCTCCACCCTGCACGCCCAGACACGCCCTCTTCC GCCCCACCTTCTCCCCTTGCCTGGTCACATCGTCGCCCTCACACCCCTGCCACCTCCCCACTCGCAAACGGCGAG CCAAGGTCATACATGTCCCCAAAGAGCGATTATTCTCCCTCATCGTCCCCTATCTTGGCCCACGCTCAAGCCACT CAAGCACAGGCCCAATGGACTGCCAGTCTTCCAGCCTCTCCTTTGCTCACCTCTCGTTCTCTCAATGCCAAAGCT TCAGAATTCAGACCCATCCCAAGGCCGCTTTCTTCAGCTTCTTCTCAACCTGGCTCACTTCTTCGTGCCGACACG CCTTCTCCAGACATGTGGGCTCACAACTCCCCACGCGCCACCTCCAATCTCGCCATCGCCGCGCCACTCATAGCA GATCAGTCCACTTCCGCTCCAAGGGCACTCACCCCCAGCTCATCTTTGCGCTCCTTTGTCCGCCCCGATGAAGAC GAAGACGAAGGCGAAGATCCCGATCCCTATGATCCCTTCACTAACAATGGCCAGCTGCCAGCCCCGTTCCATTCC ATTACCGTTTCCGACTTTGATAATCAGTGGTCCGTATCACCGCCAGAAGAGTCAGAGCTCACTCATATGGCAACT CAACCTCCATACGAGTACGGCTATTCGCCGTTCAACCCGAATGGAAACAATGATCCCATCGACGATGTTGAAGCC AACGCCGCTCTCACAGATGGCATGACGCCCTTTGATGTTCTCAGTTCCGTCTTTGGCTCTACACTAGCCCCATCA GAGCTCGAAGAGGCTCTGGCCGCCAATGGATACGATTTCGAGCACGCGATGGCGTGGTTGATCGATCGTGGTTTA CCTCAACAGCCAGCGTCGCCTACACAAGTACGAATGCAGCCTATGGGCAATCGTGTCACTCTGGTATCACGCGAT ACCGGGGGAACCATACGTGGCACTGTCAAAGGCGGATATCACAACAACAATAGCAATGGGACCGGTCGTGGTGCT CCTCCGAGATATGCCAATGGCCGCCCTTCCCAATCGGGTAATAGGGTCTGCAGATATTTTGTTGCTGGAGAATGC CTCCGCGCGGACTGCCGTTTCAGTCATGACTTGGAGCGCGCCTTGTGTCGCTTTTGGTTGAGAGGTATGTGTGCT AAAAATGAAGCTTGCGAGTTTTTGCACCATTTGCCCAAGGATGTGGATGTGGCAAACTTGAACGTGGCGATGTCC CGAGCGAATATAGGACCACCCAGTCACTATGGTCCACCCGAGATGCACGCTCCCGTTGACGAGTTCCCTGTACTT GGGTATGAGGGAAATGTTATGAGGATGAATAAACCTGGAGGATATTATGATCCGGGACGAACACGATTCGCAGCT GCTGTCAAGAAACCAGCTCCTCCCAAGATTAATGGCGTTCAACTGGCTCGTGTGATGGGCCCGGCCGCGGATAAT TTGCATCACCAATCGGCTATTGTTGCTCCTCGACCGTCGCCACGTATAAAACTTCATCCACCTACCTTGGTACCG ACTTTACCTACCGGTGATGCTGTCAATCAGTTATACATGAATTATCGTCAACGTGCGTTACAGTTGGGAGCGGCA AGGAATGCTTGTTTGTCTCGTGCTGCTGATGCATGGAGACGAGGAGATGGCGCTGCTGCCAAGAGGTTTAGTAGG GAAGGACATGATCTGAATGCCAAAATGTCAACGGAGATGGCGAATGCGGCATCTAAATTAGTTAGGGAACGATCG AGTTTGGCGGAACAGGCTGTGAGGGCGAGAGATTTAAGTTGGTCGGATGATCCTGGGGACCGGAGTGCGAGGGGG AGACCTTGTGGGTCTGGTTTGGGTGTTGTTTTGGGTGTGGGGAGGAAGGATGTTGGAGATGGCAAGTTGACGACG GAGGAGAGGACGGAGTGTATGCTTGATTTACATGGTTTGCATTCGAATGAGGCTACGGAGGTGTTGGAACAATTT TTACTTTCGTTGGAAAGGGAACACTTTTATGGTTTAGCTTATGCGGTTGTTGGAGAAGAAAAGCATACTGGGACG CAAGATCCTTCTAGGGGCGCTTCGCGTAATAGATTGGCTACGGCTGTACGTGAATGGGTTCATCGTTGGGGATAT CCATGGAGCGAGAGAGATGGTATCATTTGCATTGATCCATTGACCCACGCGTCCGAGTAG |
Transcript | >AgabiH97|094790 ATGGCTACCCTCGCCGTCCCTTCCTCTTACACGCCCCTCTTTCCGACAGAGACACCACACGCACACGACTCTGCC ACCCTCAAGTTTCCCCACACAAGAGCTCAGCTCGCCGCCGTCGCGCGCCAACACAAACCAGCCGACACTCATGAT TCAGACACCGGCACAGACGACCTCGGCCGCGTTCCGTCTTCCTTTGTCGCAAAGGTCGTTTCTCTGCTCACAGAC GAAAAGGAAGACGAGCTCAAGGCGCTGCTCAAGGCCACCTACAGTCTAGACAATCAATCACTCGAAGAGTCTGTG CTGGACCTCATGCACAAGCACCGCGACGACGTCGCTGGCGTCCCATTTGTATTTTTGACGCCAACGCGTCGTCCC ATTTCCCGTCCTTCTTCCCGGGCGTCATCTCACTCGGCCCGTCTCCACCCTGCACGCCCAGACACGCCCTCTTCC GCCCCACCTTCTCCCCTTGCCTGGTCACATCGTCGCCCTCACACCCCTGCCACCTCCCCACTCGCAAACGGCGAG CCAAGGTCATACATGTCCCCAAAGAGCGATTATTCTCCCTCATCGTCCCCTATCTTGGCCCACGCTCAAGCCACT CAAGCACAGGCCCAATGGACTGCCAGTCTTCCAGCCTCTCCTTTGCTCACCTCTCGTTCTCTCAATGCCAAAGCT TCAGAATTCAGACCCATCCCAAGGCCGCTTTCTTCAGCTTCTTCTCAACCTGGCTCACTTCTTCGTGCCGACACG CCTTCTCCAGACATGTGGGCTCACAACTCCCCACGCGCCACCTCCAATCTCGCCATCGCCGCGCCACTCATAGCA GATCAGTCCACTTCCGCTCCAAGGGCACTCACCCCCAGCTCATCTTTGCGCTCCTTTGTCCGCCCCGATGAAGAC GAAGACGAAGGCGAAGATCCCGATCCCTATGATCCCTTCACTAACAATGGCCAGCTGCCAGCCCCGTTCCATTCC ATTACCGTTTCCGACTTTGATAATCAGTGGTCCGTATCACCGCCAGAAGAGTCAGAGCTCACTCATATGGCAACT CAACCTCCATACGAGTACGGCTATTCGCCGTTCAACCCGAATGGAAACAATGATCCCATCGACGATGTTGAAGCC AACGCCGCTCTCACAGATGGCATGACGCCCTTTGATGTTCTCAGTTCCGTCTTTGGCTCTACACTAGCCCCATCA GAGCTCGAAGAGGCTCTGGCCGCCAATGGATACGATTTCGAGCACGCGATGGCGTGGTTGATCGATCGTGGTTTA CCTCAACAGCCAGCGTCGCCTACACAAGTACGAATGCAGCCTATGGGCAATCGTGTCACTCTGGTATCACGCGAT ACCGGGGGAACCATACGTGGCACTGTCAAAGGCGGATATCACAACAACAATAGCAATGGGACCGGTCGTGGTGCT CCTCCGAGATATGCCAATGGCCGCCCTTCCCAATCGGGTAATAGGGTCTGCAGATATTTTGTTGCTGGAGAATGC CTCCGCGCGGACTGCCGTTTCAGTCATGACTTGGAGCGCGCCTTGTGTCGCTTTTGGTTGAGAGGTATGTGTGCT AAAAATGAAGCTTGCGAGTTTTTGCACCATTTGCCCAAGGATGTGGATGTGGCAAACTTGAACGTGGCGATGTCC CGAGCGAATATAGGACCACCCAGTCACTATGGTCCACCCGAGATGCACGCTCCCGTTGACGAGTTCCCTGTACTT GGGTATGAGGGAAATGTTATGAGGATGAATAAACCTGGAGGATATTATGATCCGGGACGAACACGATTCGCAGCT GCTGTCAAGAAACCAGCTCCTCCCAAGATTAATGGCGTTCAACTGGCTCGTGTGATGGGCCCGGCCGCGGATAAT TTGCATCACCAATCGGCTATTGTTGCTCCTCGACCGTCGCCACGTATAAAACTTCATCCACCTACCTTGGTACCG ACTTTACCTACCGGTGATGCTGTCAATCAGTTATACATGAATTATCGTCAACGTGCGTTACAGTTGGGAGCGGCA AGGAATGCTTGTTTGTCTCGTGCTGCTGATGCATGGAGACGAGGAGATGGCGCTGCTGCCAAGAGGTTTAGTAGG GAAGGACATGATCTGAATGCCAAAATGTCAACGGAGATGGCGAATGCGGCATCTAAATTAGTTAGGGAACGATCG AGTTTGGCGGAACAGGCTGTGAGGGCGAGAGATTTAAGTTGGTCGGATGATCCTGGGGACCGGAGTGCGAGGGGG AGACCTTGTGGGTCTGGTTTGGGTGTTGTTTTGGGTGTGGGGAGGAAGGATGTTGGAGATGGCAAGTTGACGACG GAGGAGAGGACGGAGTGTATGCTTGATTTACATGGTTTGCATTCGAATGAGGCTACGGAGGTGTTGGAACAATTT TTACTTTCGTTGGAAAGGGAACACTTTTATGGTTTAGCTTATGCGGTTGTTGGAGAAGAAAAGCATACTGGGACG CAAGATCCTTCTAGGGGCGCTTCGCGTAATAGATTGGCTACGGCTGTACGTGAATGGGTTCATCGTTGGGGATAT CCATGGAGCGAGAGAGATGGTATCATTTGCATTGATCCATTGACCCACGCGTCCGAGTAG |
Gene | >AgabiH97|094790 ATGGCTACCCTCGCCGTCCCTTCCTCTTACACGCCCCTCTTTCCGACAGAGACACCACACGCACACGACTCTGCC ACCCTCAAGTTTCCCCACACAAGAGCTCAGCTCGCCGCCGTCGCGCGCCAACACAAACCAGCCGACACTCATGAT TCAGACACCGGCACAGACGACCTCGGCCGCGTTCCGTCTTCCTTTGTCGCAAAGGTCGTTTCTCTGCTCACAGAC GAAAAGGAAGACGAGCTCAAGGCGCTGCTCAAGGCCACCTACAGTCTAGACAATCAATCAGTCAGTATCTCCACG TAGGCCTAAACATTGTGTCCTGAACAGATATTCAACAGCTCGAAGAGTCTGTGCTGGACCTCATGCACAAGCACC GCGACGACGTCGCTGGCGTCCCATTTGTATTTTTGACGCCAACGCGTCGTCCCATTTCCCGTCCTTCTTCCCGGG CGTCATCTCACTCGGCCCGTCTCCACCCTGCACGCCCAGACACGCCCTCTTCCGCCCCACCTTCTCCCCTTGCCT GGTCACATCGTCGCCCTCACACCCCTGCCACCTCCCCACTCGCAAACGGCGAGCCAAGGTCATACATGTCCCCAA AGAGCGATTATTCTCCCTCATCGTCCCCTATCTTGGCCCACGCTCAAGCCACTCAAGCACAGGCCCAATGGACTG CCAGTCTTCCAGCCTCTCCTTTGCTCACCTCTCGTTCTCTCAATGCCAAAGCTTCAGAATTCAGACCCATCCCAA GGCCGCTTTCTTCAGCTTCTTCTCAACCTGGCTCACTTCTTCGTGCCGACACGCCTTCTCCAGACATGTGGGCTC ACAACTCCCCACGCGCCACCTCCAATCTCGCCATCGCCGCGCCACTCATAGCAGATCAGTCCACTTCCGCTCCAA GGGCACTCACCCCCAGCTCATCTTTGCGCTCCTTTGTCCGCCCCGATGAAGACGAAGACGAAGGCGAAGATCCCG ATCCCTATGATCCCTTCACTAACAATGGCCAGCTGCCAGCCCCGTTCCATTCCATTACCGTTTCCGACTTTGATA ATCAGTGGTCCGTATCACCGCCAGAAGAGTCAGAGCTCACTCATATGGCAACTCAACCTCCATACGAGTACGGCT ATTCGCCGTTCAACCCGAATGGAAACAATGATCCCATCGACGATGTTGAAGCCAACGCCGCTCTCACAGATGGCA TGACGCCCTTTGATGTTCTCAGTTCCGTCTTTGGCTCTACACTAGCCCCATCAGAGCTCGAAGAGGCTCTGGCCG CCAATGGATACGATTTCGAGCACGCGATGGCGTGGTTGATCGATCGTGGTTTACCTCAACAGCCAGCGTCGCCTA CACAAGTACGAATGCAGCCTATGGGCAATCGTGTCACTCTGGTATCACGCGATACCGGGGGAACCATACGTGGCA CTGTCAAAGGCGGATATCACAACAACAATAGCAATGGGACCGGTCGTGGTGCTCCTCCGAGATATGCCAATGGCC GCCCTTCCCAATCGGGTAATAGGGTCTGCAGATATTTTGTTGCTGGAGAATGCCTCCGCGCGGACTGCCGTTTCA GGTTGGTTTGCCGTCTCCATACTCTACATGTGCGCTGATGCATTTCTATATAGTCATGACTTGGAGCGCGCCTTG TGTCGCTTTTGGTTGAGAGGTATGTGTGCTAAAAATGAAGCTTGCGAGTTTTTGCACCATTTGCCCAAGGATGTG GATGTGGCAAACTTGAACGTGGCGATGTCCCGAGCGAATATAGGACCACCCAGTCACTATGGTCCACCCGAGATG CACGCTCCCGTTGACGAGTTCCCTGTACTTGGGTATGAGGGAAATGTTATGAGGATGAATAAACCTGGAGGATAT TATGATCCGGGACGAACACGATTCGCAGCTGCTGTCAAGAAACCAGCTCCTCCCAAGATTAATGGCGTTCAACTG GCTCGTGTGATGGGCCCGGCCGCGGATAATTTGCATCACCAATCGGCTATTGTTGCTCCTCGACCGTCGCCACGT ATAAAACTTCATCCACCTACCTTGGTACCGACTTTACCTACCGGTGATGCTGTCAATCAGTTATACATGAATTAT CGTCAACGTGCGTTACAGTTGGGAGCGGCAAGGAATGCTTGTTTGTCTCGTGCTGCTGATGCATGGAGACGAGGA GATGGCGCTGCTGCCAAGAGGTTTAGTAGGGAAGGACATGATCTGAATGCCAAAATGTCAACGGAGATGGCGAAT GCGGCATCTAAATTAGTTAGGGAACGATCGAGTTTGGCGGAACAGGCTGTGAGGGCGAGAGATTTAAGTTGGTCG GATGATCCTGGGGACCGGAGTGCGAGGGGGAGACCTTGTGGGTCTGGTTTGGGTGTTGTTTTGGGTGTGGGGAGG AAGGATGTTGGAGATGGCAAGTTGACGACGGAGGAGAGGACGGAGTGTATGCTTGATTTACATGGTTTGCATTCG AATGAGGCTACGGAGGTGTTGGAACAATTTTTACTTTCGGTGAGATTTCTATCATTATCAATTCGTTTCATGTGC GGGTGTTAATCATCTTGTAGTTGGAAAGGGAACACTTTTATGGTTTAGGTACGTTGTTACATGAACTGTTCAATT GAGAGACATGACACTGATGGATTTTGTTGCTAGCTTATGCGGTTGTTGGAGAAGAAAAGCATACTGGGACGCAAG ATCCTTCTAGGGGCGCTTCGCGTAATAGATTGGCTACGGCTGTACGTGAATGGGTTCATCGTTGGGGATATCCAT GGAGCGAGAGAGATGGTATCATTTGCATTGATCCATTGACCCACGCGTCCGAGTAG |