© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|094620 |
| Gene name | |
| Location | scaffold_6:1629315..1630408 |
| Strand | + |
| Gene length (bp) | 1093 |
| Transcript length (bp) | 765 |
| Coding sequence length (bp) | 765 |
| Protein length (aa) | 255 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03332 | PMM | Eukaryotic phosphomannomutase | 5.9E-104 | 33 | 253 |
| PF08282 | Hydrolase_3 | haloacid dehalogenase-like hydrolase | 8.2E-07 | 15 | 229 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTJ2|PMM_SCHPO | Phosphomannomutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmm1 PE=2 SV=1 | 12 | 253 | 5.0E-121 |
| sp|P31353|PMM_CANAL | Phosphomannomutase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMM1 PE=3 SV=1 | 1 | 253 | 9.0E-115 |
| sp|P07283|PMM_YEAST | Phosphomannomutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC53 PE=1 SV=1 | 4 | 253 | 2.0E-109 |
| sp|Q1W374|PMM_WHEAT | Phosphomannomutase OS=Triticum aestivum PE=2 SV=1 | 1 | 254 | 3.0E-98 |
| sp|Q7XPW5|PMM_ORYSJ | Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2 | 12 | 254 | 5.0E-98 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTJ2|PMM_SCHPO | Phosphomannomutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmm1 PE=2 SV=1 | 12 | 253 | 5.0E-121 |
| sp|P31353|PMM_CANAL | Phosphomannomutase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMM1 PE=3 SV=1 | 1 | 253 | 9.0E-115 |
| sp|P07283|PMM_YEAST | Phosphomannomutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC53 PE=1 SV=1 | 4 | 253 | 2.0E-109 |
| sp|Q1W374|PMM_WHEAT | Phosphomannomutase OS=Triticum aestivum PE=2 SV=1 | 1 | 254 | 3.0E-98 |
| sp|Q7XPW5|PMM_ORYSJ | Phosphomannomutase OS=Oryza sativa subsp. japonica GN=PMM PE=2 SV=2 | 12 | 254 | 5.0E-98 |
| sp|Q259G4|PMM_ORYSI | Phosphomannomutase OS=Oryza sativa subsp. indica GN=PMM PE=3 SV=1 | 12 | 254 | 5.0E-98 |
| sp|O80840|PMM_ARATH | Phosphomannomutase OS=Arabidopsis thaliana GN=PMM PE=1 SV=1 | 12 | 254 | 2.0E-97 |
| sp|Q60HD6|PMM2_MACFA | Phosphomannomutase 2 OS=Macaca fascicularis GN=PMM2 PE=2 SV=1 | 9 | 253 | 1.0E-96 |
| sp|Q1W375|PMM_TOBAC | Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1 | 8 | 254 | 2.0E-95 |
| sp|O15305|PMM2_HUMAN | Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1 | 9 | 253 | 4.0E-95 |
| sp|Q1W376|PMM_SOYBN | Phosphomannomutase OS=Glycine max PE=2 SV=1 | 8 | 254 | 7.0E-95 |
| sp|Q92871|PMM1_HUMAN | Phosphomannomutase 1 OS=Homo sapiens GN=PMM1 PE=1 SV=2 | 8 | 253 | 4.0E-93 |
| sp|Q1W377|PMM_SOLLC | Phosphomannomutase OS=Solanum lycopersicum PE=2 SV=1 | 8 | 254 | 5.0E-93 |
| sp|Q3SZJ9|PMM2_BOVIN | Phosphomannomutase 2 OS=Bos taurus GN=PMM2 PE=2 SV=1 | 9 | 254 | 2.0E-92 |
| sp|O35621|PMM1_MOUSE | Phosphomannomutase 1 OS=Mus musculus GN=Pmm1 PE=1 SV=1 | 8 | 253 | 5.0E-92 |
| sp|Q9Z2M7|PMM2_MOUSE | Phosphomannomutase 2 OS=Mus musculus GN=Pmm2 PE=1 SV=1 | 12 | 253 | 9.0E-90 |
| sp|Q54X03|PMM1_DICDI | Phosphomannomutase 1 OS=Dictyostelium discoideum GN=pmmA PE=3 SV=1 | 11 | 253 | 1.0E-89 |
| sp|Q86B09|PMM2_DICDI | Phosphomannomutase 2 OS=Dictyostelium discoideum GN=pmmB PE=3 SV=2 | 10 | 254 | 3.0E-88 |
| sp|Q8SVM5|PMM_ENCCU | Phosphomannomutase OS=Encephalitozoon cuniculi (strain GB-M1) GN=SEC53 PE=1 SV=1 | 8 | 247 | 3.0E-82 |
| sp|Q9VTZ6|PMM_DROME | Probable phosphomannomutase OS=Drosophila melanogaster GN=CG10688 PE=2 SV=1 | 13 | 251 | 5.0E-81 |
| sp|Q9XUE6|PMM_CAEEL | Probable phosphomannomutase OS=Caenorhabditis elegans GN=F52B11.2 PE=3 SV=2 | 12 | 251 | 5.0E-80 |
| sp|O43976|PMM_BABBO | Phosphomannomutase OS=Babesia bovis GN=PMM PE=2 SV=1 | 13 | 251 | 9.0E-58 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009298 | GDP-mannose biosynthetic process | Yes |
| GO:0004615 | phosphomannomutase activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0009225 | nucleotide-sugar metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0019673 | GDP-mannose metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0055086 | nucleobase-containing small molecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009987 | cellular process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009226 | nucleotide-sugar biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0016866 | intramolecular transferase activity | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|094620 MSKSFKDRPRNALCLFDVDGTLTLARQGASKEMIDTLRQLRKNVAVGFVSGSDLAKIIEQLETNGFNVINDLDYA FAENGLSAYKLGQLLPSESFINFVGEEKYKVLVNFILHYLADMDIPIKRGTFIEFRRGMINVSPIGRNATIKERI EFEKLDKEKRYREKFVQVLREKFSDYGLTFSIGGQISFDVFPNGWDKRYALRRVEDEGFDEIHFFGDKTFEGGND YEIFADPRTIGHSVNNPEDTIRILKEQFL* |
| Coding | >AgabiH97|094620 ATGTCTAAAAGCTTCAAAGACAGGCCCCGCAACGCCCTCTGCCTCTTCGATGTTGACGGCACACTTACACTAGCC CGTCAGGGTGCATCCAAGGAGATGATTGATACCCTTCGTCAACTACGCAAAAACGTAGCCGTTGGATTTGTTAGT GGCTCCGATCTTGCCAAAATAATCGAACAACTCGAGACAAATGGGTTCAACGTCATTAATGACCTCGATTATGCG TTTGCTGAGAACGGTCTCTCAGCGTACAAACTCGGTCAACTTCTCCCTTCTGAATCGTTTATCAATTTTGTTGGG GAGGAAAAGTACAAGGTCCTGGTAAACTTCATCCTTCACTACCTTGCCGATATGGACATTCCCATAAAACGTGGA ACTTTTATTGAATTCCGTCGGGGAATGATCAACGTCAGTCCCATTGGCCGTAACGCGACTATTAAAGAGCGAATA GAGTTCGAAAAGTTAGACAAGGAAAAACGGTATCGCGAAAAATTCGTCCAGGTTCTCAGGGAAAAATTCTCCGAC TACGGACTTACGTTTTCCATCGGTGGTCAAATTTCTTTCGACGTCTTTCCTAATGGATGGGACAAGAGGTACGCG CTTCGTAGGGTAGAAGACGAGGGTTTCGACGAAATTCATTTCTTTGGCGATAAAACATTCGAGGGAGGGAATGAC TATGAGATCTTCGCCGACCCTCGGACGATAGGACACTCCGTCAACAACCCTGAAGACACTATTCGCATCCTCAAA GAACAATTCCTTTAA |
| Transcript | >AgabiH97|094620 ATGTCTAAAAGCTTCAAAGACAGGCCCCGCAACGCCCTCTGCCTCTTCGATGTTGACGGCACACTTACACTAGCC CGTCAGGGTGCATCCAAGGAGATGATTGATACCCTTCGTCAACTACGCAAAAACGTAGCCGTTGGATTTGTTAGT GGCTCCGATCTTGCCAAAATAATCGAACAACTCGAGACAAATGGGTTCAACGTCATTAATGACCTCGATTATGCG TTTGCTGAGAACGGTCTCTCAGCGTACAAACTCGGTCAACTTCTCCCTTCTGAATCGTTTATCAATTTTGTTGGG GAGGAAAAGTACAAGGTCCTGGTAAACTTCATCCTTCACTACCTTGCCGATATGGACATTCCCATAAAACGTGGA ACTTTTATTGAATTCCGTCGGGGAATGATCAACGTCAGTCCCATTGGCCGTAACGCGACTATTAAAGAGCGAATA GAGTTCGAAAAGTTAGACAAGGAAAAACGGTATCGCGAAAAATTCGTCCAGGTTCTCAGGGAAAAATTCTCCGAC TACGGACTTACGTTTTCCATCGGTGGTCAAATTTCTTTCGACGTCTTTCCTAATGGATGGGACAAGAGGTACGCG CTTCGTAGGGTAGAAGACGAGGGTTTCGACGAAATTCATTTCTTTGGCGATAAAACATTCGAGGGAGGGAATGAC TATGAGATCTTCGCCGACCCTCGGACGATAGGACACTCCGTCAACAACCCTGAAGACACTATTCGCATCCTCAAA GAACAATTCCTTTAA |
| Gene | >AgabiH97|094620 ATGTCTAAAAGCTTCAAAGACAGGCCCCGCAACGCCCTCTGCCTCTTCGATGTTGACGGCACACTTACACTAGCC CGTCAGGTCCGTCATTTCATACTCTTCCCTGTATGCGATCCTTGACTGCTCAGCCTACTAGGGTGCATCCAAGGA GATGATTGATACCCTTCGTCAACTACGCAAAAACGTAGCCGTTGGATTTGTTAGTGGCTCCGATCTTGCCAAAAT AATCGAACAACTCGAGACAAATGGGTTCAACGGTACTGATAACCTACCTGTATCCATACCCTGTCTATTATCTAA CTGTCAGATTTGCAGTCATTAATGACCTCGATTATGCGTTTGCTGAGAACGGTCTCTCAGCGTACAAACTCGGTC AACTTCTCCCTTCTGAATCGTTTATCAATTTTGTTGGGGAGGAAAAGTACAAGGTCCTGGTAAACTTCATCCTTC ACTACCTTGCCGATATGGACATTCCCATAAAACGGTAAAAGATACCCTTTCCAAACAGACTACACCGAGGCACTG AGATTTGATTTTTCGAAGTGGAACTTTTATTGAATTCCGTCGGGGAATGATCAACGTCAGTCCCATTGGCCGTAA CGCGACGTCAGTCCTACTAATTCTGTAATCTACCCGAACACTCATGAAAGTCTACCTAGTATTAAAGAGCGAATA GAGTTCGAAAAGTTAGACAAGGTACCCACAAAGATATATGCGATAGGAAAGCCGCAAACGTATATTTCATAATTT AGGAAAAACGGTATCGCGAAAAATTCGTCCAGGTTCTCAGGGAAAAATTCTCCGACTACGGACTTACGTTTTCCA TCGGTGGTCAAATTTCTTTCGACGTCTTTCCTAATGGATGGGACAAGAGGTACGCGCTTCGTAGGGTAGAAGACG AGGGTTTCGACGAAATTCATTTCTTTGGCGATAAAACATTCGAGGTCAGTGCGGCTACTCCTGGGCAACCATATT TAATCATCCGATCTAGGGAGGGAATGACTATGAGATCTTCGCCGACCCTCGGACGATAGGACACTCCGTCAACAA CCCTGAAGACACTATTCGCATCCTCAAAGAACAATTCCTTTAA |