Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|094560
Gene name
Locationscaffold_6:1615631..1616679
Strand+
Gene length (bp)1048
Transcript length (bp)651
Coding sequence length (bp)651
Protein length (aa) 217

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07719 TPR_2 Tetratricopeptide repeat 5.6E-06 82 113
PF13414 TPR_11 TPR repeat 1.4E-06 92 125
PF00515 TPR_1 Tetratricopeptide repeat 1.0E-06 81 113
PF13432 TPR_16 Tetratricopeptide repeat 8.2E-06 53 115
PF13181 TPR_8 Tetratricopeptide repeat 2.5E-02 81 113
PF13429 TPR_15 Tetratricopeptide repeat 2.5E-06 44 172

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 58.05 30.88 85.23
Initials Initials knots 44.85 23.75 65.95
Pileal_Stipeal_center Stage I stipe center 68.03 37.80 98.26
Pileal_Stipeal_shell Stage I stipe shell 91.22 52.43 130.01
DIF_stipe_center Stage II stipe center 78.10 44.05 112.14
DIF_stipe_shell Stage II stipe shell 48.53 25.94 71.12
DIF_stipe_skin Stage II stipe skin 52.32 28.31 76.33
DIF_cap_skin Stage II cap skin 83.82 47.92 119.71
DIF_cap_tissue Stage II cap tissue 95.72 55.45 135.98
DIF_gill_tissue Stage II gill tissue 103.04 60.04 146.03
YFB_stipe_center Young fruiting body stipe center 57.58 31.08 84.08
YFB_stipe_shell Young fruiting body stipe shell 48.69 25.78 71.60
YFB_stipe_skin Young fruiting body stipe skin 45.43 24.09 66.77
YFB_cap_skin Young fruiting body cap skin 56.53 30.60 82.46
YFB_cap_tissue Young fruiting body cap tissue 72.29 40.70 103.88
YFB_gill_tissue Young fruiting body gill tissue 59.89 32.73 87.04
YFB_veil Young fruiting body veil 71.64 40.10 103.19

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.055381 no
Casing YFB_stipe_center 0.989540 no
Casing YFB_stipe_shell 0.713907 no
Casing YFB_stipe_skin 0.570491 no
Casing YFB_cap_skin 0.967587 no
Casing YFB_cap_tissue 0.598867 no
Casing YFB_gill_tissue 0.960236 no
Casing YFB_veil 0.619249 no
Casing Initials 0.538888 no
Casing Pileal_Stipeal_center 0.742032 no
Casing Pileal_Stipeal_shell 0.159185 no
Casing DIF_stipe_center 0.432917 no
Casing DIF_stipe_shell 0.702806 no
Casing DIF_stipe_skin 0.850470 no
Casing DIF_cap_skin 0.283263 no
Casing DIF_cap_tissue 0.105702 no
DIF_gill_tissue YFB_stipe_center 0.048212 yes
DIF_gill_tissue YFB_stipe_shell 0.007782 yes
DIF_gill_tissue YFB_stipe_skin 0.003365 yes
DIF_gill_tissue YFB_cap_skin 0.036455 yes
DIF_gill_tissue YFB_cap_tissue 0.274252 no
DIF_gill_tissue YFB_gill_tissue 0.061662 no
DIF_gill_tissue YFB_veil 0.256965 no
YFB_stipe_center YFB_stipe_shell 0.730275 no
YFB_stipe_center YFB_stipe_skin 0.586294 no
YFB_stipe_center YFB_cap_skin 0.977253 no
YFB_stipe_center YFB_cap_tissue 0.578337 no
YFB_stipe_center YFB_gill_tissue 0.948823 no
YFB_stipe_center YFB_veil 0.599907 no
YFB_stipe_shell YFB_stipe_skin 0.910074 no
YFB_stipe_shell YFB_cap_skin 0.766358 no
YFB_stipe_shell YFB_cap_tissue 0.246714 no
YFB_stipe_shell YFB_gill_tissue 0.635478 no
YFB_stipe_shell YFB_veil 0.259991 no
YFB_stipe_skin YFB_cap_skin 0.621479 no
YFB_stipe_skin YFB_cap_tissue 0.150706 no
YFB_stipe_skin YFB_gill_tissue 0.485484 no
YFB_stipe_skin YFB_veil 0.162357 no
YFB_cap_skin YFB_cap_tissue 0.534262 no
YFB_cap_skin YFB_gill_tissue 0.922735 no
YFB_cap_skin YFB_veil 0.554138 no
YFB_cap_tissue YFB_gill_tissue 0.656621 no
YFB_cap_tissue YFB_veil 0.987573 no
YFB_gill_tissue YFB_veil 0.682919 no
Initials DIF_gill_tissue 0.001625 yes
Initials YFB_stipe_center 0.570335 no
Initials YFB_stipe_shell 0.892303 no
Initials YFB_stipe_skin 0.984363 no
Initials YFB_cap_skin 0.601584 no
Initials YFB_cap_tissue 0.140982 no
Initials YFB_gill_tissue 0.470167 no
Initials YFB_veil 0.152605 no
Initials Pileal_Stipeal_center 0.235924 no
Initials Pileal_Stipeal_shell 0.016386 yes
Initials DIF_stipe_center 0.082106 no
Initials DIF_stipe_shell 0.893375 no
Initials DIF_stipe_skin 0.760197 no
Initials DIF_cap_skin 0.034837 yes
Initials DIF_cap_tissue 0.006742 yes
Pileal_Stipeal_center DIF_gill_tissue 0.193884 no
Pileal_Stipeal_center YFB_stipe_center 0.725487 no
Pileal_Stipeal_center YFB_stipe_shell 0.377268 no
Pileal_Stipeal_center YFB_stipe_skin 0.255371 no
Pileal_Stipeal_center YFB_cap_skin 0.684468 no
Pileal_Stipeal_center YFB_cap_tissue 0.915583 no
Pileal_Stipeal_center YFB_gill_tissue 0.797303 no
Pileal_Stipeal_center YFB_veil 0.929049 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.415885 no
Pileal_Stipeal_center DIF_stipe_center 0.774640 no
Pileal_Stipeal_center DIF_stipe_shell 0.353791 no
Pileal_Stipeal_center DIF_stipe_skin 0.512152 no
Pileal_Stipeal_center DIF_cap_skin 0.610121 no
Pileal_Stipeal_center DIF_cap_tissue 0.319242 no
Pileal_Stipeal_shell DIF_gill_tissue 0.792561 no
Pileal_Stipeal_shell YFB_stipe_center 0.153005 no
Pileal_Stipeal_shell YFB_stipe_shell 0.033906 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.020260 yes
Pileal_Stipeal_shell YFB_cap_skin 0.124412 no
Pileal_Stipeal_shell YFB_cap_tissue 0.544343 no
Pileal_Stipeal_shell YFB_gill_tissue 0.186808 no
Pileal_Stipeal_shell YFB_veil 0.522819 no
Pileal_Stipeal_shell DIF_stipe_center 0.727960 no
Pileal_Stipeal_shell DIF_stipe_shell 0.029408 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.062038 no
Pileal_Stipeal_shell DIF_cap_skin 0.869750 no
Pileal_Stipeal_shell DIF_cap_tissue 0.929931 no
DIF_stipe_center DIF_gill_tissue 0.443716 no
DIF_stipe_center YFB_stipe_center 0.422885 no
DIF_stipe_center YFB_stipe_shell 0.154113 no
DIF_stipe_center YFB_stipe_skin 0.084017 no
DIF_stipe_center YFB_cap_skin 0.377754 no
DIF_stipe_center YFB_cap_tissue 0.886199 no
DIF_stipe_center YFB_gill_tissue 0.486243 no
DIF_stipe_center YFB_veil 0.870539 no
DIF_stipe_center DIF_stipe_shell 0.135891 no
DIF_stipe_center DIF_stipe_skin 0.233086 no
DIF_stipe_center DIF_cap_skin 0.896926 no
DIF_stipe_center DIF_cap_tissue 0.608765 no
DIF_stipe_shell DIF_gill_tissue 0.007092 yes
DIF_stipe_shell YFB_stipe_center 0.717092 no
DIF_stipe_shell YFB_stipe_shell 0.995126 no
DIF_stipe_shell YFB_stipe_skin 0.911023 no
DIF_stipe_shell YFB_cap_skin 0.752491 no
DIF_stipe_shell YFB_cap_tissue 0.228924 no
DIF_stipe_shell YFB_gill_tissue 0.620193 no
DIF_stipe_shell YFB_veil 0.238213 no
DIF_stipe_shell DIF_stipe_skin 0.894083 no
DIF_stipe_shell DIF_cap_skin 0.062038 no
DIF_stipe_shell DIF_cap_tissue 0.015242 yes
DIF_stipe_skin DIF_gill_tissue 0.016669 yes
DIF_stipe_skin YFB_stipe_center 0.864614 no
DIF_stipe_skin YFB_stipe_shell 0.904245 no
DIF_stipe_skin YFB_stipe_skin 0.783520 no
DIF_stipe_skin YFB_cap_skin 0.893666 no
DIF_stipe_skin YFB_cap_tissue 0.370189 no
DIF_stipe_skin YFB_gill_tissue 0.785375 no
DIF_stipe_skin YFB_veil 0.385853 no
DIF_stipe_skin DIF_cap_skin 0.128955 no
DIF_stipe_skin DIF_cap_tissue 0.037140 yes
DIF_cap_skin DIF_gill_tissue 0.591877 no
DIF_cap_skin YFB_stipe_center 0.269746 no
DIF_cap_skin YFB_stipe_shell 0.077879 no
DIF_cap_skin YFB_stipe_skin 0.044631 yes
DIF_cap_skin YFB_cap_skin 0.229585 no
DIF_cap_skin YFB_cap_tissue 0.742545 no
DIF_cap_skin YFB_gill_tissue 0.314250 no
DIF_cap_skin YFB_veil 0.721719 no
DIF_cap_skin DIF_cap_tissue 0.766661 no
DIF_cap_tissue DIF_gill_tissue 0.881649 no
DIF_cap_tissue YFB_stipe_center 0.096942 no
DIF_cap_tissue YFB_stipe_shell 0.016949 yes
DIF_cap_tissue YFB_stipe_skin 0.009446 yes
DIF_cap_tissue YFB_cap_skin 0.075016 no
DIF_cap_tissue YFB_cap_tissue 0.420780 no
DIF_cap_tissue YFB_gill_tissue 0.113810 no
DIF_cap_tissue YFB_veil 0.397375 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|094560
MYFARLARSFAATARRPTTTRPAFRPSRRWATSVTPHSTASDPAETEAVRCMEQGTAKLEEGDVQAAKELYKRSA
SIKRNASSLFNLGVTHYHLKEYDDAIAAWKESVTLQPSSPDAHINLASAYIISPVPRPDLALHHLEIASSLSPED
PEIAFNHAAVLEATGKLDEALEKYKLSKQFGVERAAVHIRNVSAKIFGQKMKQAENSPGTPDDKTS*
Coding >AgabiH97|094560
ATGTATTTTGCCCGCCTAGCCCGTTCCTTTGCCGCCACCGCGCGCCGTCCAACGACAACAAGGCCAGCATTCAGA
CCGTCTAGACGATGGGCTACTTCCGTCACCCCCCATTCGACCGCATCCGACCCGGCGGAAACAGAGGCAGTCCGC
TGTATGGAGCAGGGTACAGCGAAGCTCGAGGAGGGCGATGTTCAAGCCGCAAAAGAACTTTATAAACGCAGCGCC
AGCATCAAGAGGAATGCAAGCTCGCTTTTCAACCTTGGTGTCACGCACTACCATCTTAAGGAATATGATGATGCG
ATTGCAGCGTGGAAAGAGTCAGTTACGCTGCAGCCATCCAGTCCAGACGCGCACATAAACCTTGCAAGCGCTTAC
ATCATTTCACCTGTTCCTCGTCCGGATCTTGCGCTCCACCACCTCGAGATTGCTTCATCTCTCTCTCCCGAAGAT
CCAGAAATAGCTTTCAATCACGCCGCTGTGTTGGAAGCCACCGGTAAATTGGACGAGGCTCTCGAAAAGTACAAG
CTTAGCAAGCAATTCGGCGTCGAACGCGCCGCCGTTCACATACGCAACGTCAGCGCAAAAATCTTTGGGCAGAAA
ATGAAGCAAGCGGAGAATTCGCCAGGAACACCCGACGATAAGACTTCATGA
Transcript >AgabiH97|094560
ATGTATTTTGCCCGCCTAGCCCGTTCCTTTGCCGCCACCGCGCGCCGTCCAACGACAACAAGGCCAGCATTCAGA
CCGTCTAGACGATGGGCTACTTCCGTCACCCCCCATTCGACCGCATCCGACCCGGCGGAAACAGAGGCAGTCCGC
TGTATGGAGCAGGGTACAGCGAAGCTCGAGGAGGGCGATGTTCAAGCCGCAAAAGAACTTTATAAACGCAGCGCC
AGCATCAAGAGGAATGCAAGCTCGCTTTTCAACCTTGGTGTCACGCACTACCATCTTAAGGAATATGATGATGCG
ATTGCAGCGTGGAAAGAGTCAGTTACGCTGCAGCCATCCAGTCCAGACGCGCACATAAACCTTGCAAGCGCTTAC
ATCATTTCACCTGTTCCTCGTCCGGATCTTGCGCTCCACCACCTCGAGATTGCTTCATCTCTCTCTCCCGAAGAT
CCAGAAATAGCTTTCAATCACGCCGCTGTGTTGGAAGCCACCGGTAAATTGGACGAGGCTCTCGAAAAGTACAAG
CTTAGCAAGCAATTCGGCGTCGAACGCGCCGCCGTTCACATACGCAACGTCAGCGCAAAAATCTTTGGGCAGAAA
ATGAAGCAAGCGGAGAATTCGCCAGGAACACCCGACGATAAGACTTCATGA
Gene >AgabiH97|094560
ATGTATTTTGCCCGCCTAGCCCGTTCCTTTGCCGCCACCGCGCGCCGTCCAACGACAACAAGGCCAGCATTCAGA
CCGTCTAGACGTATGTTATTATTTGTTTTTTGCCTCTGACTTTAATAATGACCGCCGTCCAGGATGGGCTACTTC
CGTCACCCCCCATTCGACCGCATCCGACCCGGCGGAAACAGAGGCAGTCCGCTGTATGGAGCAGGGTACAGCGAA
GCTCGAGGAGGGCGATGTTCAAGCCGCAAAAGAACTTTATAAACGCAGCGCCAGCATCAAGAGGAATGCAAGCTC
GCTTTTCAACCTTGGTGTCACGCACTACCATCTTAGTTCGCGCATCTTCCTCTTATTCGTTTTTTCCATTAGCTG
ATATATCCCCAGAGGAATATGATGATGCGATTGCAGCGTGGAAAGAGTCAGTTACGCTGCAGCCATCCAGTCCAG
ACGCGCACATAAGTATGTCCACGCTTGCCTACATGGGCTAGTGATACTCATATCCTTAGACCTTGCAAGCGCTTA
CATCATTTCACCTGGTGTGTCTTCTCCAAAATTCGCTCCCACATCGACGTAACTTCTTTAAAAAAACTTAGTTCC
TCGTCCGGATCTTGCGCTCCACCACCTCGAGTACAACAGCTTGCCTCATCGCCGTGTCAATCAATTGACGCAGTA
ACCAACAGGATTGCTTCATCTCTCTCTCCCGAAGATCCAGAAATAGCTTTCAATCACGCCGCTGTGTTGGAAGCC
AGTCAGTTCGGCTTCTCTCTGTCTCGTATTGTTTTCTAATCTTAGCATGATCGTATTCCCTCCAGCCGGTAAATT
GGACGAGGCTCTCGAAAAGTACAAGCTTAGCAAGCAATTCGGCGTCGAACGCGCCGCCGTTCACATACGCAACGT
AAGCAATCTCAAAACATTATCCTTTCGATTACCATTCAGCCACCAAACATATTAATGAAATATACCTTAGGTCAG
CGCAAAAATCTTTGGGCAGAAAATGAAGCAAGCGGAGAATTCGCCAGGAACACCCGACGATAAGACTTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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