Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|093640
Gene name
Locationscaffold_6:1395583..1396903
Strand+
Gene length (bp)1320
Transcript length (bp)969
Coding sequence length (bp)969
Protein length (aa) 323

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc 1.8E-111 68 305

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 19 320 6.0E-110
sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 19 322 2.0E-94
sp|Q9VIM5|ARPC2_DROME Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 19 319 4.0E-92
sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 19 322 2.0E-88
sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 19 322 2.0E-88
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Swissprot ID Swissprot Description Start End E-value
sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 19 320 6.0E-110
sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 19 322 2.0E-94
sp|Q9VIM5|ARPC2_DROME Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 19 319 4.0E-92
sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 19 322 2.0E-88
sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 19 322 2.0E-88
sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1 19 322 3.0E-88
sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3 19 322 8.0E-88
sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1 19 319 1.0E-86
sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1 19 319 8.0E-83
sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1 19 321 1.0E-65
sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1 19 317 2.0E-65
sp|Q8LGI3|ARC2A_ARATH Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1 19 303 3.0E-34
sp|F4IVU1|ARC2B_ARATH Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1 19 305 1.0E-19
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GO

GO Term Description Terminal node
GO:0034314 Arp2/3 complex-mediated actin nucleation Yes
GO:0030833 regulation of actin filament polymerization Yes
GO:0015629 actin cytoskeleton Yes
GO:0005885 Arp2/3 protein complex Yes
GO:0008150 biological_process No
GO:0110053 regulation of actin filament organization No
GO:0044087 regulation of cellular component biogenesis No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0005856 cytoskeleton No
GO:0043254 regulation of protein-containing complex assembly No
GO:0007015 actin filament organization No
GO:0071840 cellular component organization or biogenesis No
GO:0005575 cellular_component No
GO:0032956 regulation of actin cytoskeleton organization No
GO:0065007 biological regulation No
GO:0090066 regulation of anatomical structure size No
GO:0032970 regulation of actin filament-based process No
GO:0110165 cellular anatomical entity No
GO:0051493 regulation of cytoskeleton organization No
GO:0030832 regulation of actin filament length No
GO:0033043 regulation of organelle organization No
GO:0032535 regulation of cellular component size No
GO:0065008 regulation of biological quality No
GO:0016043 cellular component organization No
GO:0050789 regulation of biological process No
GO:0009987 cellular process No
GO:0008064 regulation of actin polymerization or depolymerization No
GO:0045010 actin nucleation No
GO:0032991 protein-containing complex No
GO:1902903 regulation of supramolecular fiber organization No
GO:0043228 non-membrane-bounded organelle No
GO:0050794 regulation of cellular process No
GO:0043226 organelle No
GO:0032271 regulation of protein polymerization No
GO:0097435 supramolecular fiber organization No
GO:0051128 regulation of cellular component organization No
GO:0043229 intracellular organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 304.88 177.06 432.71
Initials Initials knots 198.03 117.72 278.34
Pileal_Stipeal_center Stage I stipe center 148.10 89.15 207.06
Pileal_Stipeal_shell Stage I stipe shell 136.61 82.39 190.83
DIF_stipe_center Stage II stipe center 134.17 80.94 187.40
DIF_stipe_shell Stage II stipe shell 165.06 98.47 231.64
DIF_stipe_skin Stage II stipe skin 168.89 100.99 236.80
DIF_cap_skin Stage II cap skin 136.44 82.18 190.70
DIF_cap_tissue Stage II cap tissue 116.58 70.36 162.80
DIF_gill_tissue Stage II gill tissue 106.68 64.29 149.07
YFB_stipe_center Young fruiting body stipe center 183.97 109.31 258.63
YFB_stipe_shell Young fruiting body stipe shell 202.39 120.67 284.11
YFB_stipe_skin Young fruiting body stipe skin 192.74 115.16 270.31
YFB_cap_skin Young fruiting body cap skin 196.70 117.32 276.08
YFB_cap_tissue Young fruiting body cap tissue 123.90 74.35 173.45
YFB_gill_tissue Young fruiting body gill tissue 178.36 105.68 251.03
YFB_veil Young fruiting body veil 142.37 85.60 199.14

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.076086 no
Casing YFB_stipe_shell 0.161568 no
Casing YFB_stipe_skin 0.106032 no
Casing YFB_cap_skin 0.127930 no
Casing YFB_cap_tissue 0.000613 yes
Casing YFB_gill_tissue 0.051932 no
Casing YFB_veil 0.002951 yes
Casing Initials 0.134284 no
Casing Pileal_Stipeal_center 0.005302 yes
Casing Pileal_Stipeal_shell 0.002525 yes
Casing DIF_stipe_center 0.001140 yes
Casing DIF_stipe_shell 0.021846 yes
Casing DIF_stipe_skin 0.023933 yes
Casing DIF_cap_skin 0.001140 yes
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.039836 yes
DIF_gill_tissue YFB_stipe_shell 0.009446 yes
DIF_gill_tissue YFB_stipe_skin 0.018066 yes
DIF_gill_tissue YFB_cap_skin 0.013186 yes
DIF_gill_tissue YFB_cap_tissue 0.705237 no
DIF_gill_tissue YFB_gill_tissue 0.051932 no
DIF_gill_tissue YFB_veil 0.352603 no
YFB_stipe_center YFB_stipe_shell 0.841831 no
YFB_stipe_center YFB_stipe_skin 0.932700 no
YFB_stipe_center YFB_cap_skin 0.898298 no
YFB_stipe_center YFB_cap_tissue 0.180324 no
YFB_stipe_center YFB_gill_tissue 0.956062 no
YFB_stipe_center YFB_veil 0.450247 no
YFB_stipe_shell YFB_stipe_skin 0.926914 no
YFB_stipe_shell YFB_cap_skin 0.958803 no
YFB_stipe_shell YFB_cap_tissue 0.068461 no
YFB_stipe_shell YFB_gill_tissue 0.772252 no
YFB_stipe_shell YFB_veil 0.238649 no
YFB_stipe_skin YFB_cap_skin 0.969994 no
YFB_stipe_skin YFB_cap_tissue 0.109152 no
YFB_stipe_skin YFB_gill_tissue 0.875206 no
YFB_stipe_skin YFB_veil 0.331092 no
YFB_cap_skin YFB_cap_tissue 0.095478 no
YFB_cap_skin YFB_gill_tissue 0.837911 no
YFB_cap_skin YFB_veil 0.294143 no
YFB_cap_tissue YFB_gill_tissue 0.220445 no
YFB_cap_tissue YFB_veil 0.734755 no
YFB_gill_tissue YFB_veil 0.526158 no
Initials DIF_gill_tissue 0.014374 yes
Initials YFB_stipe_center 0.883828 no
Initials YFB_stipe_shell 0.968280 no
Initials YFB_stipe_skin 0.960476 no
Initials YFB_cap_skin 0.989627 no
Initials YFB_cap_tissue 0.086247 no
Initials YFB_gill_tissue 0.820852 no
Initials YFB_veil 0.278986 no
Initials Pileal_Stipeal_center 0.372922 no
Initials Pileal_Stipeal_shell 0.210069 no
Initials DIF_stipe_center 0.171265 no
Initials DIF_stipe_shell 0.643684 no
Initials DIF_stipe_skin 0.698231 no
Initials DIF_cap_skin 0.203521 no
Initials DIF_cap_tissue 0.047163 yes
Pileal_Stipeal_center DIF_gill_tissue 0.282311 no
Pileal_Stipeal_center YFB_stipe_center 0.558909 no
Pileal_Stipeal_center YFB_stipe_shell 0.318419 no
Pileal_Stipeal_center YFB_stipe_skin 0.436940 no
Pileal_Stipeal_center YFB_cap_skin 0.391271 no
Pileal_Stipeal_center YFB_cap_tissue 0.640450 no
Pileal_Stipeal_center YFB_gill_tissue 0.634621 no
Pileal_Stipeal_center YFB_veil 0.940086 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.868986 no
Pileal_Stipeal_center DIF_stipe_center 0.829433 no
Pileal_Stipeal_center DIF_stipe_shell 0.814082 no
Pileal_Stipeal_center DIF_stipe_skin 0.762847 no
Pileal_Stipeal_center DIF_cap_skin 0.863718 no
Pileal_Stipeal_center DIF_cap_tissue 0.485285 no
Pileal_Stipeal_shell DIF_gill_tissue 0.467485 no
Pileal_Stipeal_shell YFB_stipe_center 0.375595 no
Pileal_Stipeal_shell YFB_stipe_shell 0.181451 no
Pileal_Stipeal_shell YFB_stipe_skin 0.265141 no
Pileal_Stipeal_shell YFB_cap_skin 0.223716 no
Pileal_Stipeal_shell YFB_cap_tissue 0.830601 no
Pileal_Stipeal_shell YFB_gill_tissue 0.438425 no
Pileal_Stipeal_shell YFB_veil 0.937352 no
Pileal_Stipeal_shell DIF_stipe_center 0.973278 no
Pileal_Stipeal_shell DIF_stipe_shell 0.626136 no
Pileal_Stipeal_shell DIF_stipe_skin 0.567553 no
Pileal_Stipeal_shell DIF_cap_skin 0.998164 no
Pileal_Stipeal_shell DIF_cap_tissue 0.692078 no
DIF_stipe_center DIF_gill_tissue 0.505115 no
DIF_stipe_center YFB_stipe_center 0.322431 no
DIF_stipe_center YFB_stipe_shell 0.145002 no
DIF_stipe_center YFB_stipe_skin 0.219408 no
DIF_stipe_center YFB_cap_skin 0.182564 no
DIF_stipe_center YFB_cap_tissue 0.867614 no
DIF_stipe_center YFB_gill_tissue 0.383535 no
DIF_stipe_center YFB_veil 0.906485 no
DIF_stipe_center DIF_stipe_shell 0.569594 no
DIF_stipe_center DIF_stipe_skin 0.511724 no
DIF_stipe_center DIF_cap_skin 0.975421 no
DIF_stipe_center DIF_cap_tissue 0.728694 no
DIF_stipe_shell DIF_gill_tissue 0.112109 no
DIF_stipe_shell YFB_stipe_center 0.816639 no
DIF_stipe_shell YFB_stipe_shell 0.582543 no
DIF_stipe_shell YFB_stipe_skin 0.707042 no
DIF_stipe_shell YFB_cap_skin 0.659401 no
DIF_stipe_shell YFB_cap_tissue 0.366628 no
DIF_stipe_shell YFB_gill_tissue 0.878157 no
DIF_stipe_shell YFB_veil 0.720930 no
DIF_stipe_shell DIF_stipe_skin 0.966023 no
DIF_stipe_shell DIF_cap_skin 0.611401 no
DIF_stipe_shell DIF_cap_tissue 0.244377 no
DIF_stipe_skin DIF_gill_tissue 0.103796 no
DIF_stipe_skin YFB_stipe_center 0.862635 no
DIF_stipe_skin YFB_stipe_shell 0.639833 no
DIF_stipe_skin YFB_stipe_skin 0.759269 no
DIF_stipe_skin YFB_cap_skin 0.713017 no
DIF_stipe_skin YFB_cap_tissue 0.320070 no
DIF_stipe_skin YFB_gill_tissue 0.917851 no
DIF_stipe_skin YFB_veil 0.661113 no
DIF_stipe_skin DIF_cap_skin 0.551460 no
DIF_stipe_skin DIF_cap_tissue 0.212706 no
DIF_cap_skin DIF_gill_tissue 0.466236 no
DIF_cap_skin YFB_stipe_center 0.365009 no
DIF_cap_skin YFB_stipe_shell 0.170621 no
DIF_cap_skin YFB_stipe_skin 0.255267 no
DIF_cap_skin YFB_cap_skin 0.214821 no
DIF_cap_skin YFB_cap_tissue 0.832182 no
DIF_cap_skin YFB_gill_tissue 0.425676 no
DIF_cap_skin YFB_veil 0.934639 no
DIF_cap_skin DIF_cap_tissue 0.689117 no
DIF_cap_tissue DIF_gill_tissue 0.850975 no
DIF_cap_tissue YFB_stipe_center 0.110389 no
DIF_cap_tissue YFB_stipe_shell 0.039165 yes
DIF_cap_tissue YFB_stipe_skin 0.060104 no
DIF_cap_tissue YFB_cap_skin 0.049882 yes
DIF_cap_tissue YFB_cap_tissue 0.905219 no
DIF_cap_tissue YFB_gill_tissue 0.136602 no
DIF_cap_tissue YFB_veil 0.575999 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|093640
MYDGVCLFTRPQLHLLHAMILLEPHNTIIQTTLLDKIAKPSTLDVQFVDFDGVRFHLTSGDKKTMILLSMNIRCW
DELARYGAVDILKREYGALVLDQPENEYNVSLMIDLEQVPQDPESRDAFVMSIAMLKRNALSATFERAFQEQKEL
ETSGGKAELMEIHYRDEEAIYVQASPDRVTVIFSTIFREETDRIFGKVFLQEFVDARRQPSIQNAPQVLYTNRDP
PLEIRHIAGLRSTEDTGYVTFVLFPRHFSKPDVAAATISHIQLFRDYLHYHIKCSKAYMHSRMRARVTEFQKVLN
RAKAEVATGEKKTVSGRTMVHR*
Coding >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT
AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC
GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG
GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG
AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA
ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG
GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG
CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG
CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT
CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT
CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT
CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT
CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG
Transcript >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT
AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC
GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG
GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG
AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA
ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG
GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG
CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG
CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT
CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT
CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT
CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT
CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG
Gene >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGGTATGTAGATTCAACCTACAAAG
GGGACCGTTTCAGCTAAGACTTATCTGGCTCAGCGATGATTCTCCTGGAAGTAAGCCTGAGGTTGAAGCCCCTAA
TAACCCTCACTTGGCTCATGGGATGTAATTTGCTTGCAGCCTCATAACACGATCATTCAAACTACCCTCTTAGAC
AAGATCGCAAAGTTTGTCCATGGCGTGTTTACTCTTGTTCTGTCACTTCACAATATATGTCTAGGCCTTCGACCC
TCGATGTCCAGTTCGTTGATTTCGATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGC
TGTCTATGAACATCCGATGTTGGGACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGG
CGTTGGTGTTAGACCAACCTGAGAATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATC
CTGGTGAGTTTAGACTCGATTAGATTATATTTGGGGAGCTGACAATGAACTATTCAGAATCGCGGGATGCATTCG
TAATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGT
TGGAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTT
CGCCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCT
TGCAGGTGAATATGAATAAATGGTTTCCCTATATTACGGCGGCACTCGATTTCTGATGTTGAATCTGGATAGGAA
TTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCTCCCCTT
GAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCTCGGCAT
TTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTATCACATC
AAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAATCGTGCC
AAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGGTGAGTGTCTATATTGACTCCTGGCGTCCAGCAGTAT
CTGATTGATATTCGGTTTAGTGGGCGGACGATGGTCCATCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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