© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|093640 |
| Gene name | |
| Location | scaffold_6:1395583..1396903 |
| Strand | + |
| Gene length (bp) | 1320 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04045 | P34-Arc | Arp2/3 complex, 34 kD subunit p34-Arc | 1.8E-111 | 68 | 305 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14241|ARPC2_SCHPO | Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 | 19 | 320 | 6.0E-110 |
| sp|Q7PVX8|ARPC2_ANOGA | Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 | 19 | 322 | 2.0E-94 |
| sp|Q9VIM5|ARPC2_DROME | Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 | 19 | 319 | 4.0E-92 |
| sp|Q5R5Z5|ARPC2_PONAB | Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 | 19 | 322 | 2.0E-88 |
| sp|O15144|ARPC2_HUMAN | Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 | 19 | 322 | 2.0E-88 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14241|ARPC2_SCHPO | Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 | 19 | 320 | 6.0E-110 |
| sp|Q7PVX8|ARPC2_ANOGA | Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 | 19 | 322 | 2.0E-94 |
| sp|Q9VIM5|ARPC2_DROME | Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 | 19 | 319 | 4.0E-92 |
| sp|Q5R5Z5|ARPC2_PONAB | Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 | 19 | 322 | 2.0E-88 |
| sp|O15144|ARPC2_HUMAN | Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 | 19 | 322 | 2.0E-88 |
| sp|Q3MHR7|ARPC2_BOVIN | Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1 | 19 | 322 | 3.0E-88 |
| sp|Q9CVB6|ARPC2_MOUSE | Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3 | 19 | 322 | 8.0E-88 |
| sp|P85970|ARPC2_RAT | Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1 | 19 | 319 | 1.0E-86 |
| sp|Q8WTM6|ARPC2_CAEEL | Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1 | 19 | 319 | 8.0E-83 |
| sp|P53731|ARPC2_YEAST | Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1 | 19 | 321 | 1.0E-65 |
| sp|O96623|ARPC2_DICDI | Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1 | 19 | 317 | 2.0E-65 |
| sp|Q8LGI3|ARC2A_ARATH | Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1 | 19 | 303 | 3.0E-34 |
| sp|F4IVU1|ARC2B_ARATH | Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1 | 19 | 305 | 1.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | Yes |
| GO:0030833 | regulation of actin filament polymerization | Yes |
| GO:0015629 | actin cytoskeleton | Yes |
| GO:0005885 | Arp2/3 protein complex | Yes |
| GO:0008150 | biological_process | No |
| GO:0110053 | regulation of actin filament organization | No |
| GO:0044087 | regulation of cellular component biogenesis | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0005856 | cytoskeleton | No |
| GO:0043254 | regulation of protein-containing complex assembly | No |
| GO:0007015 | actin filament organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0005575 | cellular_component | No |
| GO:0032956 | regulation of actin cytoskeleton organization | No |
| GO:0065007 | biological regulation | No |
| GO:0090066 | regulation of anatomical structure size | No |
| GO:0032970 | regulation of actin filament-based process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051493 | regulation of cytoskeleton organization | No |
| GO:0030832 | regulation of actin filament length | No |
| GO:0033043 | regulation of organelle organization | No |
| GO:0032535 | regulation of cellular component size | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0016043 | cellular component organization | No |
| GO:0050789 | regulation of biological process | No |
| GO:0009987 | cellular process | No |
| GO:0008064 | regulation of actin polymerization or depolymerization | No |
| GO:0045010 | actin nucleation | No |
| GO:0032991 | protein-containing complex | No |
| GO:1902903 | regulation of supramolecular fiber organization | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0043226 | organelle | No |
| GO:0032271 | regulation of protein polymerization | No |
| GO:0097435 | supramolecular fiber organization | No |
| GO:0051128 | regulation of cellular component organization | No |
| GO:0043229 | intracellular organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|093640 MYDGVCLFTRPQLHLLHAMILLEPHNTIIQTTLLDKIAKPSTLDVQFVDFDGVRFHLTSGDKKTMILLSMNIRCW DELARYGAVDILKREYGALVLDQPENEYNVSLMIDLEQVPQDPESRDAFVMSIAMLKRNALSATFERAFQEQKEL ETSGGKAELMEIHYRDEEAIYVQASPDRVTVIFSTIFREETDRIFGKVFLQEFVDARRQPSIQNAPQVLYTNRDP PLEIRHIAGLRSTEDTGYVTFVLFPRHFSKPDVAAATISHIQLFRDYLHYHIKCSKAYMHSRMRARVTEFQKVLN RAKAEVATGEKKTVSGRTMVHR* |
| Coding | >AgabiH97|093640 ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG |
| Transcript | >AgabiH97|093640 ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG |
| Gene | >AgabiH97|093640 ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGGTATGTAGATTCAACCTACAAAG GGGACCGTTTCAGCTAAGACTTATCTGGCTCAGCGATGATTCTCCTGGAAGTAAGCCTGAGGTTGAAGCCCCTAA TAACCCTCACTTGGCTCATGGGATGTAATTTGCTTGCAGCCTCATAACACGATCATTCAAACTACCCTCTTAGAC AAGATCGCAAAGTTTGTCCATGGCGTGTTTACTCTTGTTCTGTCACTTCACAATATATGTCTAGGCCTTCGACCC TCGATGTCCAGTTCGTTGATTTCGATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGC TGTCTATGAACATCCGATGTTGGGACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGG CGTTGGTGTTAGACCAACCTGAGAATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATC CTGGTGAGTTTAGACTCGATTAGATTATATTTGGGGAGCTGACAATGAACTATTCAGAATCGCGGGATGCATTCG TAATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGT TGGAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTT CGCCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCT TGCAGGTGAATATGAATAAATGGTTTCCCTATATTACGGCGGCACTCGATTTCTGATGTTGAATCTGGATAGGAA TTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCTCCCCTT GAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCTCGGCAT TTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTATCACATC AAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAATCGTGCC AAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGGTGAGTGTCTATATTGACTCCTGGCGTCCAGCAGTAT CTGATTGATATTCGGTTTAGTGGGCGGACGATGGTCCATCGGTAG |