Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|093640
Gene name
Locationscaffold_6:1395583..1396903
Strand+
Gene length (bp)1320
Transcript length (bp)969
Coding sequence length (bp)969
Protein length (aa) 323

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04045 P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc 1.8E-111 68 305

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 19 320 6.0E-110
sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 19 322 2.0E-94
sp|Q9VIM5|ARPC2_DROME Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 19 319 4.0E-92
sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 19 322 2.0E-88
sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 19 322 2.0E-88
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Swissprot ID Swissprot Description Start End E-value
sp|O14241|ARPC2_SCHPO Actin-related protein 2/3 complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc2 PE=1 SV=1 19 320 6.0E-110
sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2 19 322 2.0E-94
sp|Q9VIM5|ARPC2_DROME Actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arpc2 PE=2 SV=2 19 319 4.0E-92
sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1 19 322 2.0E-88
sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1 19 322 2.0E-88
sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1 19 322 3.0E-88
sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3 19 322 8.0E-88
sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1 19 319 1.0E-86
sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1 19 319 8.0E-83
sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1 19 321 1.0E-65
sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1 19 317 2.0E-65
sp|Q8LGI3|ARC2A_ARATH Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana GN=ARPC2A PE=1 SV=1 19 303 3.0E-34
sp|F4IVU1|ARC2B_ARATH Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana GN=ARPC2B PE=2 SV=1 19 305 1.0E-19
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GO

GO Term Description Terminal node
GO:0034314 Arp2/3 complex-mediated actin nucleation Yes
GO:0030833 regulation of actin filament polymerization Yes
GO:0015629 actin cytoskeleton Yes
GO:0005885 Arp2/3 protein complex Yes
GO:0008150 biological_process No
GO:0110053 regulation of actin filament organization No
GO:0044087 regulation of cellular component biogenesis No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0005856 cytoskeleton No
GO:0043254 regulation of protein-containing complex assembly No
GO:0007015 actin filament organization No
GO:0071840 cellular component organization or biogenesis No
GO:0005575 cellular_component No
GO:0032956 regulation of actin cytoskeleton organization No
GO:0065007 biological regulation No
GO:0090066 regulation of anatomical structure size No
GO:0032970 regulation of actin filament-based process No
GO:0110165 cellular anatomical entity No
GO:0051493 regulation of cytoskeleton organization No
GO:0030832 regulation of actin filament length No
GO:0033043 regulation of organelle organization No
GO:0032535 regulation of cellular component size No
GO:0065008 regulation of biological quality No
GO:0016043 cellular component organization No
GO:0050789 regulation of biological process No
GO:0009987 cellular process No
GO:0008064 regulation of actin polymerization or depolymerization No
GO:0045010 actin nucleation No
GO:0032991 protein-containing complex No
GO:1902903 regulation of supramolecular fiber organization No
GO:0043228 non-membrane-bounded organelle No
GO:0050794 regulation of cellular process No
GO:0043226 organelle No
GO:0032271 regulation of protein polymerization No
GO:0097435 supramolecular fiber organization No
GO:0051128 regulation of cellular component organization No
GO:0043229 intracellular organelle No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|093640
MYDGVCLFTRPQLHLLHAMILLEPHNTIIQTTLLDKIAKPSTLDVQFVDFDGVRFHLTSGDKKTMILLSMNIRCW
DELARYGAVDILKREYGALVLDQPENEYNVSLMIDLEQVPQDPESRDAFVMSIAMLKRNALSATFERAFQEQKEL
ETSGGKAELMEIHYRDEEAIYVQASPDRVTVIFSTIFREETDRIFGKVFLQEFVDARRQPSIQNAPQVLYTNRDP
PLEIRHIAGLRSTEDTGYVTFVLFPRHFSKPDVAAATISHIQLFRDYLHYHIKCSKAYMHSRMRARVTEFQKVLN
RAKAEVATGEKKTVSGRTMVHR*
Coding >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT
AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC
GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG
GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG
AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA
ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG
GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG
CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG
CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT
CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT
CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT
CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT
CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG
Transcript >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGCGATGATTCTCCTGGAACCTCAT
AACACGATCATTCAAACTACCCTCTTAGACAAGATCGCAAAGCCTTCGACCCTCGATGTCCAGTTCGTTGATTTC
GATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGCTGTCTATGAACATCCGATGTTGG
GACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGGCGTTGGTGTTAGACCAACCTGAG
AATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATCCTGAATCGCGGGATGCATTCGTA
ATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGTTG
GAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTTCG
CCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCTTG
CAGGAATTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCT
CCCCTTGAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCT
CGGCATTTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTAT
CACATCAAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAAT
CGTGCCAAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGTGGGCGGACGATGGTCCATCGGTAG
Gene >AgabiH97|093640
ATGTACGATGGTGTTTGTTTGTTCACTCGACCACAACTACATTTATTGCACGGTATGTAGATTCAACCTACAAAG
GGGACCGTTTCAGCTAAGACTTATCTGGCTCAGCGATGATTCTCCTGGAAGTAAGCCTGAGGTTGAAGCCCCTAA
TAACCCTCACTTGGCTCATGGGATGTAATTTGCTTGCAGCCTCATAACACGATCATTCAAACTACCCTCTTAGAC
AAGATCGCAAAGTTTGTCCATGGCGTGTTTACTCTTGTTCTGTCACTTCACAATATATGTCTAGGCCTTCGACCC
TCGATGTCCAGTTCGTTGATTTCGATGGCGTACGCTTCCATTTAACATCGGGAGATAAGAAGACTATGATACTGC
TGTCTATGAACATCCGATGTTGGGACGAACTGGCCAGATACGGTGCTGTGGATATTTTGAAACGAGAATACGGGG
CGTTGGTGTTAGACCAACCTGAGAATGAGTATAATGTTAGCTTGATGATCGACTTGGAGCAAGTCCCGCAGGATC
CTGGTGAGTTTAGACTCGATTAGATTATATTTGGGGAGCTGACAATGAACTATTCAGAATCGCGGGATGCATTCG
TAATGTCGATTGCGATGTTAAAGAGAAATGCACTATCTGCAACTTTCGAGCGTGCATTCCAGGAACAGAAGGAGT
TGGAGACGTCTGGAGGAAAGGCAGAACTGATGGAAATCCATTACCGGGACGAAGAAGCTATCTACGTCCAGGCTT
CGCCCGACAGAGTTACCGTCATTTTCTCTACCATCTTCAGAGAGGAGACAGACCGCATCTTTGGCAAAGTGTTCT
TGCAGGTGAATATGAATAAATGGTTTCCCTATATTACGGCGGCACTCGATTTCTGATGTTGAATCTGGATAGGAA
TTCGTTGATGCTCGTAGGCAACCATCGATTCAGAATGCGCCTCAGGTTCTCTACACGAATCGCGATCCTCCCCTT
GAAATTCGTCATATCGCAGGTCTGAGAAGTACTGAAGACACAGGCTATGTCACCTTTGTACTCTTTCCTCGGCAT
TTCTCAAAACCCGATGTGGCGGCTGCGACGATATCACACATCCAGTTGTTCCGTGATTATTTGCATTATCACATC
AAGTGTTCTAAGGCGTACATGCACTCTCGCATGCGGGCTCGGGTGACAGAATTCCAGAAAGTATTGAATCGTGCC
AAGGCAGAAGTGGCCACGGGTGAAAAGAAGACGGTTAGGTGAGTGTCTATATTGACTCCTGGCGTCCAGCAGTAT
CTGATTGATATTCGGTTTAGTGGGCGGACGATGGTCCATCGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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